View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21669_high_2 (Length: 641)

Name: NF21669_high_2
Description: NF21669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21669_high_2
NF21669_high_2
[»] scaffold0576 (2 HSPs)
scaffold0576 (28-515)||(7760-8247)
scaffold0576 (492-617)||(8258-8383)
[»] chr6 (2 HSPs)
chr6 (28-515)||(15362989-15363476)
chr6 (492-617)||(15363487-15363612)
[»] chr3 (5 HSPs)
chr3 (28-515)||(7406093-7406580)
chr3 (492-617)||(7405957-7406082)
chr3 (377-495)||(1655887-1656005)
chr3 (28-117)||(7394920-7395009)
chr3 (28-94)||(1655826-1655892)
[»] chr2 (1 HSPs)
chr2 (28-495)||(31341091-31341558)
[»] chr8 (7 HSPs)
chr8 (180-495)||(17303497-17303810)
chr8 (28-142)||(17303375-17303489)
chr8 (492-608)||(25639937-25640053)
chr8 (350-495)||(17253304-17253447)
chr8 (269-492)||(17242255-17242471)
chr8 (161-243)||(17242148-17242227)
chr8 (149-226)||(17253170-17253244)
[»] chr7 (3 HSPs)
chr7 (230-495)||(4684596-4684861)
chr7 (492-617)||(4683767-4683892)
chr7 (556-594)||(24712070-24712108)


Alignment Details
Target: scaffold0576 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 28 - 515
Target Start/End: Original strand, 7760 - 8247
Alignment:
Q  28 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7760 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 7859  T
Q  128 agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa 227  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7860 agagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa 7959  T
Q  228 aaagtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt 327  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7960 aaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt 8059  T
Q  328 gattatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaagga 427  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8060 gattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaagga 8159  T
Q  428 cacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8160 cacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 8247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 492 - 617
Target Start/End: Original strand, 8258 - 8383
Alignment:
Q  492 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8258 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 8357  T
Q  592 aagtttcctcaattctaatgatgatg 617  Q
    ||||||||||||||||||||||||||    
T  8358 aagtttcctcaattctaatgatgatg 8383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 28 - 515
Target Start/End: Original strand, 15362989 - 15363476
Alignment:
Q  28 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15362989 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 15363088  T
Q  128 agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa 227  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15363089 agagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa 15363188  T
Q  228 aaagtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt 327  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15363189 aaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt 15363288  T
Q  328 gattatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaagga 427  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15363289 gattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaagga 15363388  T
Q  428 cacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15363389 cacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 15363476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 492 - 617
Target Start/End: Original strand, 15363487 - 15363612
Alignment:
Q  492 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15363487 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 15363586  T
Q  592 aagtttcctcaattctaatgatgatg 617  Q
    ||||||||||||||||||||||||||    
T  15363587 aagtttcctcaattctaatgatgatg 15363612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 28 - 515
Target Start/End: Complemental strand, 7406580 - 7406093
Alignment:
Q  28 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406580 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 7406481  T
Q  128 agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa 227  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406480 agagatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa 7406381  T
Q  228 aaagtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt 327  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406380 aaagtaaagaacgactttgatatatctggactagtattgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt 7406281  T
Q  328 gattatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaagga 427  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7406280 gattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaagga 7406181  T
Q  428 cacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406180 cacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgtctactgctgagaagaaattt 7406093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 492 - 617
Target Start/End: Complemental strand, 7406082 - 7405957
Alignment:
Q  492 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406082 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 7405983  T
Q  592 aagtttcctcaattctaatgatgatg 617  Q
    ||||||||||||||||||||||||||    
T  7405982 aagtttcctcaattctaatgatgatg 7405957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 377 - 495
Target Start/End: Original strand, 1655887 - 1656005
Alignment:
Q  377 taatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaa 476  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1655887 taatagttagtttaataattctaaataatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaa 1655986  T
Q  477 aatccaagggtctgcatgt 495  Q
    |||||||||||||||||||    
T  1655987 aatccaagggtctgcatgt 1656005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 28 - 117
Target Start/End: Complemental strand, 7395009 - 7394920
Alignment:
Q  28 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7395009 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaa 7394920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 1655826 - 1655892
Alignment:
Q  28 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatag 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1655826 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatag 1655892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 28 - 495
Target Start/End: Complemental strand, 31341558 - 31341091
Alignment:
Q  28 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31341558 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 31341459  T
Q  128 agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31341458 agaaatcaagaaatactcataatcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaa 31341359  T
Q  228 aaagtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt 327  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31341358 aaagtaaagaacgactttgatatatctggaatagtagtgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctctt 31341259  T
Q  328 gattatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaagga 427  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31341258 gattatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgccaaagga 31341159  T
Q  428 cacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 495  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  31341158 cacctattttccagaacaagtgcattcaaggcaagaaaatgaaccgtaaaatccaagggtccgcatgt 31341091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 180 - 495
Target Start/End: Original strand, 17303497 - 17303810
Alignment:
Q  180 tcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaag-aacgactttgatatatctggactagtagtgtatctccaaatg 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||| |    
T  17303497 tcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaaggaacgactttgatatatctggactagt---gtatctccaaacg 17303593  T
Q  279 ttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaaagatggacggaatcataaatattgttgaagctctccta 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  17303594 ttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaaagatggacagaatcataaatattgttgaagctctccta 17303693  T
Q  379 atatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaa 478  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17303694 atatttagtttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaataagtacattcaaggcaagaaaatgaaccgtaaaa 17303793  T
Q  479 tccaagggtctgcatgt 495  Q
    |||||||||||||||||    
T  17303794 tccaagggtctgcatgt 17303810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 17303375 - 17303489
Alignment:
Q  28 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaacaggaaaata 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17303375 caagaactaaatcaaaccacaacatcaagagacaaaactaaccagaaggaatactcaacattaatagatcacctctcttggagcaccaaaaaggaaaata 17303474  T
Q  128 agaaatcaagaaata 142  Q
    |||||||||||||||    
T  17303475 agaaatcaagaaata 17303489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 492 - 608
Target Start/End: Original strand, 25639937 - 25640053
Alignment:
Q  492 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 591  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  25639937 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatatatatctcagcatctaccattccaagagcaacaccac 25640036  T
Q  592 aagtttcctcaattcta 608  Q
    |||||||||||||||||    
T  25640037 aagtttcctcaattcta 25640053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 350 - 495
Target Start/End: Original strand, 17253304 - 17253447
Alignment:
Q  350 gaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagta 449  Q
    |||||||||||||||  |||||||||||||||| ||| || ||| ||||||||| || ||||| ||||||||||||||||||||  ||||||||||||||    
T  17253304 gaatcataaatattgccgaagctctcctaatatctagattcatatttctaaacattggcacatcacaatgtcaaaggacaccta--ttccagaacaagta 17253401  T
Q  450 cattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 495  Q
    |||||||||||||||||||| | || ||||||||||||||||||||    
T  17253402 cattcaaggcaagaaaatgaccagtgaaatccaagggtctgcatgt 17253447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 269 - 492
Target Start/End: Original strand, 17242255 - 17242471
Alignment:
Q  269 tctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttgattatccaagaa--agatggacggaatcataaatattgtt 366  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||| | |||||||||||||      
T  17242255 tctccaaacattgtagatattcaaactttagccctctgcaaaacagaggtgtatatcttgattatccaagaaagagatggacagtatcataaatattgcc 17242354  T
Q  367 gaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaa 466  Q
     |||||||| |||||| ||| || ||||||||| ||| || ||||| ||       |||||||||||  | |  ||||||||||||||||||||||||||    
T  17242355 aaagctctcataatatctagattcataattctagacattgccacatcac-------aaggacaccta--tacatgaacaagtacattcaaggcaagaaaa 17242445  T
Q  467 tgaaccgtaaaatccaagggtctgca 492  Q
    ||| | || |||||||||||||||||    
T  17242446 tgaccggtgaaatccaagggtctgca 17242471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 17242148 - 17242227
Alignment:
Q  161 attgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaacttaaaaagtaaagaacgact 243  Q
    |||||| ||||||||||||||||||||||||||    |||||||||| ||||||||   || |||||||||||||||||||||    
T  17242148 attgaaaagaaaaatagattcacaatccaatct---tcatgtcttaaaaacaaagcaataatcttaaaaagtaaagaacgact 17242227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 17253170 - 17253244
Alignment:
Q  149 atcaacagaaatattgaacagaaaaatagattcacaatccaatctgcagcatgtcttaagaacaaagcccaaaactta 226  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||   ||||||| |||||||||| |||||| ||||    
T  17253170 atcaatagaaatattgaaaataaaaatagattcacaatccaatct---gcatgtcataagaacaaatcccaaatctta 17253244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 230 - 495
Target Start/End: Complemental strand, 4684861 - 4684596
Alignment:
Q  230 agtaaagaacgactttgatatatctggactagtagtgtatctccaaatgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttga 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684861 agtaaagaacgactttgatatatctggactagtagtgtatctccaaacgttgtagatatccaaactttagccctctgcaaaacagaagtgtatctcttga 4684762  T
Q  330 ttatccaagaaagatggacggaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattacaatgtcaaaggaca 429  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  4684761 ttatccaagaaagatggacagaatcataaatattgttgaagctctcctaatatttagtttaataattctaaacaatgacacattagaatgccaaaggaca 4684662  T
Q  430 cctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684661 cctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatgt 4684596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 492 - 617
Target Start/End: Complemental strand, 4683892 - 4683767
Alignment:
Q  492 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 591  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4683892 atgtctattgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 4683793  T
Q  592 aagtttcctcaattctaatgatgatg 617  Q
    ||||||||||||||||||||||||||    
T  4683792 aagtttcctcaattctaatgatgatg 4683767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 594
Target Start/End: Complemental strand, 24712108 - 24712070
Alignment:
Q  556 atatctcagcatctaccattccaagagtaacaccacaag 594  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  24712108 atatttcagcatctaccattctaagagtaacaccacaag 24712070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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