View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21669_high_5 (Length: 425)
Name: NF21669_high_5
Description: NF21669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21669_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 393
Target Start/End: Original strand, 27722116 - 27722162
Alignment:
| Q |
347 |
aaaaaacatagtttaaggttttatattatgtgggtttgagatgtaac |
393 |
Q |
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| T |
27722116 |
aaaaaacatagtttaaggttttatattatgtgggtttgagatgtaac |
27722162 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 27721838 - 27721886
Alignment:
| Q |
87 |
aacaacccctgtgcagttcttttgaaactgcacagaattttgtaccttc |
135 |
Q |
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| T |
27721838 |
aacaacccctgtgcagttcttttgaaactgcacagaattttataccttc |
27721886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 27721990 - 27722031
Alignment:
| Q |
230 |
gtgcagttcatgtacttacaaaaacgtaagaagatcctggtc |
271 |
Q |
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| T |
27721990 |
gtgcagttcatgtacttacaaaaacgtaagaagatcctggtc |
27722031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 27721807 - 27721842
Alignment:
| Q |
24 |
catcatcacacgttgttcttcctcaataacaaacaa |
59 |
Q |
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| T |
27721807 |
catcatcacacgttgttcttcctcaataacaaacaa |
27721842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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