View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21669_high_7 (Length: 386)

Name: NF21669_high_7
Description: NF21669
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21669_high_7
NF21669_high_7
[»] chr5 (19 HSPs)
chr5 (1-158)||(42061486-42061643)
chr5 (9-158)||(28442032-28442181)
chr5 (9-158)||(31862872-31863021)
chr5 (30-158)||(14376706-14376834)
chr5 (1-158)||(22937898-22938055)
chr5 (1-112)||(43490839-43490950)
chr5 (3-112)||(32837129-32837238)
chr5 (1-112)||(37214812-37214923)
chr5 (49-158)||(14016927-14017036)
chr5 (49-162)||(17747613-17747726)
chr5 (67-159)||(21827949-21828042)
chr5 (67-158)||(21336650-21336742)
chr5 (49-127)||(7624288-7624366)
chr5 (66-158)||(28788309-28788401)
chr5 (161-231)||(23277743-23277813)
chr5 (67-156)||(39191333-39191422)
chr5 (10-123)||(2837527-2837641)
chr5 (94-158)||(7270241-7270305)
chr5 (175-230)||(19567471-19567527)
[»] chr4 (41 HSPs)
chr4 (1-159)||(5721814-5721972)
chr4 (1-158)||(33410805-33410962)
chr4 (1-158)||(5669628-5669785)
chr4 (8-158)||(3798646-3798796)
chr4 (9-159)||(18910603-18910753)
chr4 (1-158)||(19865486-19865643)
chr4 (1-158)||(15431164-15431321)
chr4 (1-158)||(15437778-15437935)
chr4 (9-158)||(9716951-9717100)
chr4 (9-158)||(12237354-12237503)
chr4 (1-157)||(19861130-19861286)
chr4 (30-158)||(37104113-37104241)
chr4 (5-112)||(49269781-49269888)
chr4 (50-158)||(56198029-56198137)
chr4 (9-108)||(40617663-40617762)
chr4 (49-158)||(56194722-56194831)
chr4 (1-121)||(53093758-53093878)
chr4 (49-158)||(47114776-47114885)
chr4 (9-112)||(5680515-5680618)
chr4 (53-158)||(15405793-15405898)
chr4 (40-112)||(14571072-14571144)
chr4 (49-158)||(33926121-33926230)
chr4 (49-160)||(29323977-29324088)
chr4 (49-158)||(44809795-44809904)
chr4 (67-158)||(12782106-12782197)
chr4 (82-158)||(44164001-44164078)
chr4 (67-158)||(3718336-3718427)
chr4 (67-158)||(15430674-15430766)
chr4 (67-158)||(15437288-15437380)
chr4 (67-150)||(21418987-21419070)
chr4 (67-158)||(27013229-27013321)
chr4 (82-160)||(27677889-27677968)
chr4 (52-153)||(34320738-34320839)
chr4 (67-121)||(37741471-37741525)
chr4 (82-158)||(52007355-52007431)
chr4 (49-117)||(15812973-15813041)
chr4 (67-150)||(40794200-40794283)
chr4 (159-230)||(11863758-11863829)
chr4 (67-158)||(27691933-27692025)
chr4 (82-159)||(53010382-53010459)
chr4 (89-159)||(19819949-19820020)
[»] chr3 (30 HSPs)
chr3 (1-159)||(18645584-18645742)
chr3 (1-158)||(538015-538172)
chr3 (9-159)||(52198304-52198454)
chr3 (33-158)||(10107489-10107614)
chr3 (1-158)||(10884018-10884175)
chr3 (1-158)||(23299396-23299553)
chr3 (1-158)||(6921890-6922047)
chr3 (54-159)||(17532565-17532670)
chr3 (8-112)||(35411723-35411827)
chr3 (13-158)||(16185511-16185656)
chr3 (67-158)||(53814971-53815062)
chr3 (1-135)||(22994435-22994569)
chr3 (8-159)||(29344622-29344774)
chr3 (30-74)||(55032789-55032833)
chr3 (49-112)||(19302255-19302318)
chr3 (48-158)||(3839790-3839903)
chr3 (159-230)||(30059979-30060050)
chr3 (89-159)||(54460366-54460436)
chr3 (89-157)||(9380012-9380080)
chr3 (67-159)||(16243165-16243257)
chr3 (82-158)||(20729400-20729477)
chr3 (56-112)||(19305445-19305501)
chr3 (68-107)||(17529546-17529585)
chr3 (68-158)||(34984668-34984758)
chr3 (89-150)||(54736781-54736842)
chr3 (187-228)||(5698386-5698427)
chr3 (9-46)||(9380143-9380180)
chr3 (82-158)||(10880776-10880852)
chr3 (82-158)||(41976321-41976397)
chr3 (89-121)||(11636146-11636178)
[»] chr8 (18 HSPs)
chr8 (1-158)||(18722152-18722310)
chr8 (1-166)||(25595527-25595693)
chr8 (9-158)||(33878089-33878238)
chr8 (1-154)||(25592342-25592496)
chr8 (1-158)||(10663011-10663168)
chr8 (8-160)||(43682647-43682800)
chr8 (1-112)||(45156761-45156872)
chr8 (1-112)||(5540838-5540949)
chr8 (8-112)||(14420910-14421014)
chr8 (1-112)||(25228060-25228169)
chr8 (49-159)||(14589707-14589817)
chr8 (76-158)||(23612569-23612651)
chr8 (49-158)||(22174782-22174891)
chr8 (49-158)||(18826725-18826834)
chr8 (48-121)||(38249248-38249321)
chr8 (95-159)||(19792925-19792990)
chr8 (82-158)||(30640505-30640583)
chr8 (48-121)||(37681629-37681701)
[»] chr7 (21 HSPs)
chr7 (9-158)||(26556510-26556659)
chr7 (9-158)||(10431386-10431535)
chr7 (3-158)||(2442122-2442277)
chr7 (3-158)||(4542074-4542229)
chr7 (1-159)||(8276011-8276169)
chr7 (49-159)||(48644615-48644725)
chr7 (49-158)||(16164889-16164998)
chr7 (49-159)||(6602620-6602730)
chr7 (89-159)||(48645852-48645922)
chr7 (67-158)||(45288047-45288138)
chr7 (67-158)||(45291383-45291474)
chr7 (60-163)||(17729968-17730071)
chr7 (48-158)||(20081530-20081640)
chr7 (159-230)||(20465539-20465610)
chr7 (9-159)||(9865493-9865643)
chr7 (159-230)||(9257384-9257455)
chr7 (159-230)||(9312798-9312869)
chr7 (159-210)||(11231020-11231071)
chr7 (67-112)||(9080422-9080467)
chr7 (8-123)||(9273885-9274000)
chr7 (186-230)||(16202955-16202999)
[»] chr6 (16 HSPs)
chr6 (1-154)||(23388995-23389149)
chr6 (1-154)||(23379656-23379810)
chr6 (3-158)||(5739034-5739190)
chr6 (3-158)||(34501416-34501569)
chr6 (1-159)||(9953035-9953193)
chr6 (22-157)||(2371414-2371549)
chr6 (49-158)||(31071494-31071603)
chr6 (49-124)||(13004433-13004509)
chr6 (51-121)||(6512433-6512503)
chr6 (82-159)||(28666100-28666177)
chr6 (49-117)||(28112641-28112709)
chr6 (67-159)||(10289185-10289277)
chr6 (60-121)||(12991556-12991617)
chr6 (48-120)||(14282373-14282445)
chr6 (9-41)||(13004611-13004643)
chr6 (89-121)||(13022212-13022244)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-158)||(61597-61754)
[»] chr1 (13 HSPs)
chr1 (3-158)||(49499413-49499568)
chr1 (1-158)||(2793299-2793456)
chr1 (3-158)||(1951190-1951345)
chr1 (1-112)||(29644151-29644262)
chr1 (49-159)||(31204013-31204123)
chr1 (1-118)||(34733106-34733223)
chr1 (49-159)||(6071791-6071896)
chr1 (60-159)||(41059135-41059235)
chr1 (49-159)||(45961598-45961708)
chr1 (49-157)||(27537104-27537212)
chr1 (82-158)||(2404722-2404798)
chr1 (82-158)||(21019292-21019367)
chr1 (67-158)||(42021721-42021812)
[»] chr2 (24 HSPs)
chr2 (1-158)||(26358672-26358829)
chr2 (1-158)||(36809278-36809435)
chr2 (1-158)||(38006129-38006286)
chr2 (8-158)||(25821767-25821922)
chr2 (1-158)||(25869835-25869992)
chr2 (1-158)||(25873203-25873360)
chr2 (8-158)||(30275541-30275691)
chr2 (30-158)||(15466170-15466298)
chr2 (1-112)||(25139883-25139994)
chr2 (30-158)||(29439597-29439723)
chr2 (9-158)||(16788389-16788537)
chr2 (49-155)||(36985626-36985732)
chr2 (49-158)||(45456300-45456409)
chr2 (49-159)||(45453050-45453160)
chr2 (49-158)||(38014636-38014745)
chr2 (67-158)||(10599951-10600042)
chr2 (49-159)||(31430529-31430639)
chr2 (83-158)||(5665830-5665905)
chr2 (159-211)||(9961189-9961241)
chr2 (49-113)||(31428340-31428404)
chr2 (67-158)||(3874482-3874573)
chr2 (82-159)||(5104952-5105027)
chr2 (67-156)||(13136764-13136853)
chr2 (82-158)||(43722904-43722980)
[»] scaffold0005 (2 HSPs)
scaffold0005 (1-147)||(290974-291120)
scaffold0005 (40-112)||(246232-246304)
[»] scaffold0334 (1 HSPs)
scaffold0334 (34-159)||(18462-18588)
[»] scaffold0045 (1 HSPs)
scaffold0045 (52-158)||(88965-89071)
[»] scaffold0080 (1 HSPs)
scaffold0080 (1-72)||(26331-26402)
[»] scaffold1684 (1 HSPs)
scaffold1684 (53-158)||(369-474)
[»] scaffold0002 (1 HSPs)
scaffold0002 (169-231)||(367389-367451)
[»] scaffold0015 (1 HSPs)
scaffold0015 (42-158)||(197242-197358)
[»] scaffold0757 (1 HSPs)
scaffold0757 (67-158)||(4563-4654)
[»] scaffold0381 (1 HSPs)
scaffold0381 (67-158)||(6462-6554)
[»] scaffold0270 (3 HSPs)
scaffold0270 (67-158)||(969-1060)
scaffold0270 (67-158)||(4329-4420)
scaffold0270 (67-158)||(11459-11550)
[»] scaffold0039 (1 HSPs)
scaffold0039 (159-211)||(8785-8837)
[»] scaffold0520 (1 HSPs)
scaffold0520 (68-158)||(4790-4880)


Alignment Details
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 42061643 - 42061486
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42061643 tgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagcttgctt 42061544  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42061543 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 42061486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 28442032 - 28442181
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  28442032 aaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaatcttatatttttcttgttttctttgctgtttaaacttgcttgtgaactc 28442131  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28442132 aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 28442181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 31863021 - 31862872
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||    
T  31863021 aaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaattttctatttttcttgctttctttgttgtttaagcttgcttgtgaactc 31862922  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||| ||||||||||||||||||| |  |||||||||||||||||||    
T  31862921 aaaatattatgaaaatgacactaaaaataaggaatgactgactgtcatca 31862872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 14376706 - 14376834
Alignment:
Q  30 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 129  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||||    
T  14376706 aatcgtgacacgaatttgctttcctcaaaatcttctatttttcttgatttctttgttgtttaaacttgcttgtgaactcaaaatatcatgaaaatgacac 14376805  T
Q  130 taaaaacagtgaatgactgactgtcatca 158  Q
    |||||| ||||||||||||||||||||||    
T  14376806 taaaaatagtgaatgactgactgtcatca 14376834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 22937898 - 22938055
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| |||||||||| || |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||    
T  22937898 tgtgctccaaatcgtgatacgttttcaacaaccgtggcacgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgctt 22937997  T
Q  101 gtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||| |||||||||| |||| ||| ||||||||   ||||||| |||||||||||    
T  22937998 gtgaactcaaaaatatcat-aaaaagactctaaaaacgtggaatgacagactgtcatca 22938055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 43490950 - 43490839
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||| ||    
T  43490950 tgtgctcctaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgttt 43490851  T
Q  101 gtgaactcaaaa 112  Q
    ||||||||||||    
T  43490850 gtgaactcaaaa 43490839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 112
Target Start/End: Complemental strand, 32837238 - 32837129
Alignment:
Q  3 tgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgt 102  Q
    |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||  |||||| ||||||||||||||    
T  32837238 tgctccaaatcgtgacacgttttcaacaatcatgacacgattttgctttcttcaaaatcttctatttttctttcttttcttgctgcttaagcttgcttgt 32837139  T
Q  103 gaactcaaaa 112  Q
    ||||||||||    
T  32837138 gaactcaaaa 32837129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 37214923 - 37214812
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||    
T  37214923 tgtgctccaaatcgtgacatgttttcaacaattgtgatacgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgctt 37214824  T
Q  101 gtgaactcaaaa 112  Q
    ||||||||||||    
T  37214823 gtgaactcaaaa 37214812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 14016927 - 14017036
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  14016927 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 14017025  T
Q  148 gactgtcatca 158  Q
    |||||||||||    
T  14017026 gactgtcatca 14017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 17747726 - 17747613
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||| ||| ||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  17747726 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagctttcttatgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 17747628  T
Q  148 gactgtcatcagata 162  Q
    |||||||||||||||    
T  17747627 gactgtcatcagata 17747613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 21827949 - 21828042
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    ||||||||| |||  |||||| ||||||||||||| |||||||||| |||||| |||| ||| ||||||| || ||||||||||||||||||||    
T  21827949 tttttcttgcttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatcag 21828042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 21336650 - 21336742
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  ||| || |||||||||||||||||||||||| ||| || |||| ||| ||||||| ||||||||||||||||||||||    
T  21336650 tttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatataataaaaaagactctaaaaatagtgaatgactgactgtcatca 21336742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 7624366 - 7624288
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgac 127  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||| ||||||||||||| ||||| ||||||||    
T  7624366 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcctgtgaactcaaaacatcattaaaatgac 7624288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 28788309 - 28788401
Alignment:
Q  66 atttttcttgttttctttgctggttaagcttgcttgtgaact-caaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||  |||||| |||||||||||||||||||  |||||||||| |||| ||| ||||||| ||  ||||||||||||||||||    
T  28788309 atttttcttgtttttcttgctgcttaagcttgcttgtgaactaaaaaatatcat-aaaaagactctaaaaatagcaaatgactgactgtcatca 28788401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 23277743 - 23277813
Alignment:
Q  161 tatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtctttaattgcaaattatgctaaatgt 231  Q
    |||||| ||| || || ||||||||| |||||| ||| ||||||||||||| |||||||||| ||||||||    
T  23277743 tatgcatatgttgaatggattaacttagtgaaagtgcgtaatcgtctttaaatgcaaattatactaaatgt 23277813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 39191422 - 39191333
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcat 156  Q
    |||||||||||||  |||||| |||||||||||||||||||||||| |||||| |||| ||| ||||||| |   ||||| ||||||||||    
T  39191422 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaagtatcat-aaaaagactctaaaaataacaaatgattgactgtcat 39191333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 10 - 123
Target Start/End: Original strand, 2837527 - 2837641
Alignment:
Q  10 aatcgtgacac-tttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact- 107  Q
    ||||||||||| |||||||  |||||||||| ||||   |||||||||   |||||  ||||||||| |||  |||||| |||||||||||||||||||     
T  2837527 aatcgtgacacgtttttcagtaatcgtgacatgattcc-ctttcttcagtttcttcagtttttcttgcttttattgctgcttaagcttgcttgtgaactc 2837625  T
Q  108 caaaatatcatgaaaa 123  Q
    ||||||||||| ||||    
T  2837626 caaaatatcataaaaa 2837641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 7270305 - 7270241
Alignment:
Q  94 cttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||| |||||| |||| ||| ||||||| || ||||||| |||||||||||    
T  7270305 cttgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagcgaatgacagactgtcatca 7270241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 19567471 - 19567527
Alignment:
Q  175 attgattaacttggtgaaaatgcttaatcgtcttt-aattgcaaattatgctaaatg 230  Q
    |||||||||||| |||||| | ||||||||||||| || |||||||| |||||||||    
T  19567471 attgattaacttagtgaaagtacttaatcgtctttaaaatgcaaattgtgctaaatg 19567527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 5721814 - 5721972
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  5721814 tgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagcttgttt 5721913  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5721914 gtgaacttgaaatatcatgaaaatgacactaaaaacagtgaatgactgattgtcatcag 5721972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 33410805 - 33410962
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||    
T  33410805 tgtgcttcaaatcgtaacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaaacttgctt 33410904  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33410905 gtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 33410962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 5669785 - 5669628
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||    
T  5669785 tgtgtttcaaattgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaaacttgctt 5669686  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5669685 gtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 5669628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 3798646 - 3798796
Alignment:
Q  8 caaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact 107  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||    
T  3798646 caaatcgtgacacattttcaacaatcgtgacaagattttgctttcttcaaaatcttctatttttcttgctttctttgctgtttaaacttgcttgtgaact 3798745  T
Q  108 caaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3798746 caaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 3798796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 18910753 - 18910603
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||||    
T  18910753 aaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgttgtttaagtttgcttgtgaactc 18910654  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  18910653 aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatcag 18910603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 19865486 - 19865643
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| |||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||    
T  19865486 tgtgctccaaatcgtgatacattttcaataatcgtgacacgattttgttttcttcaaaatcttctatttttcttgctttctttgttgtttaagcttgctt 19865585  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19865586 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 19865643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 15431321 - 15431164
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||    
T  15431321 tgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttttctttgctgtttaaacttgctt 15431222  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  15431221 gtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15431164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 15437935 - 15437778
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||    
T  15437935 tgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttttctttgctgtttaaacttgctt 15437836  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  15437835 gtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 15437778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 9717100 - 9716951
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  9717100 aaattgtgccacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgttttctttgttgtttaaacttgcttgtgaactc 9717001  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  9717000 aaaatatcatgaaaatgacactaaaaatagtgaatgaccgactgtcatca 9716951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 12237503 - 12237354
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||||||    
T  12237503 aaattgtgacacattttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgctttctttgttgtttaagcttgcttgtgaactc 12237404  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  12237403 aaaatatcatgaaaatgacactaaaaacagtgaatgaatgactatcatca 12237354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 19861130 - 19861286
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| |||||||||| || ||||||||||||||||||| ||||||  |||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  19861130 tgtgctccaaatcgtgatacgttttcaacaatcgtgacacaattttgtgttcttcaaaatcttatatttttcttgctttctttgctgtttaagcttgctt 19861229  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatc 157  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  19861230 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgtctgccatc 19861286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 37104113 - 37104241
Alignment:
Q  30 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  37104113 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagcttgcttgtgaactcaaaatatcatgaaaatgatac 37104212  T
Q  130 taaaaacagtgaatgactgactgtcatca 158  Q
    |||| ||||||||||||||| ||||||||    
T  37104213 taaacacagtgaatgactgagtgtcatca 37104241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 49269888 - 49269781
Alignment:
Q  5 cttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtga 104  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||| |||  |    
T  49269888 cttcaaatcgtgacacgttttcaacaatcgtgatacgattttgctttcttcaaaatcttctatttttcttgctttctttgccgtttaagcttgtttgcta 49269789  T
Q  105 actcaaaa 112  Q
    ||||||||    
T  49269788 actcaaaa 49269781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 56198137 - 56198029
Alignment:
Q  50 ttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactga 149  Q
    ||||||||||||||||||||||| || |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||    
T  56198137 ttcttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactga 56198038  T
Q  150 ctgtcatca 158  Q
    |||||||||    
T  56198037 ctgtcatca 56198029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 40617663 - 40617762
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||    
T  40617663 aaatcgtgacacgttttcaacaatcgtggcacgattttgccttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactc 40617762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 56194831 - 56194722
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    |||||||||||||||||||||||| || |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  |||||| ||    
T  56194831 tttcttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgattg 56194732  T
Q  149 actgtcatca 158  Q
    ||||||||||    
T  56194731 actgtcatca 56194722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 53093878 - 53093758
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||| ||||||||| ||||||||||||||| ||||||||| ||||||||||||||||| | ||||| || |||| |||||| ||||||||||||    
T  53093878 tgtgctccaattcgtgacacgttttcaacaatcgtgtcacgattttactttcttcaaaatcttcaacttttcatgctttccttgctgtttaagcttgctt 53093779  T
Q  101 gtgaactcaaaatatcatgaa 121  Q
    |||||||||||| | ||||||    
T  53093778 gtgaactcaaaagaccatgaa 53093758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 47114885 - 47114776
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| ||||||| ||  || |||||||||||||||||||||||| || ||||||||||||||||||| |  |||||||||    
T  47114885 tttcttcaaaatcttgtatttttcatgttttccttattgtttaagcttgcttgtgaactcaaaacataatgaaaatgacactaaaaataaagaatgactg 47114786  T
Q  149 actgtcatca 158  Q
    ||||||||||    
T  47114785 actgtcatca 47114776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 5680618 - 5680515
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||| ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||  ||| || |||||||||||| |||||||    
T  5680618 aaattgtgacacgttttcaacaatcgtgacatgattttgcttttttcaaaatcttctatttttcttgcttttcttgttgtttaagcttgcttatgaactc 5680519  T
Q  109 aaaa 112  Q
    ||||    
T  5680518 aaaa 5680515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 15405793 - 15405898
Alignment:
Q  53 ttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactg 152  Q
    ||||||||||| |||||||| ||  ||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||     
T  15405793 ttcaaaatcttgtatttttcatgcgttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactt 15405892  T
Q  153 tcatca 158  Q
    ||||||    
T  15405893 tcatca 15405898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 112
Target Start/End: Complemental strand, 14571144 - 14571072
Alignment:
Q  40 cgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 112  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||    
T  14571144 cgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaa 14571072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 33926230 - 33926121
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||| | |||||| ||||||||||||||  |   ||||||||    
T  33926230 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaagacatcatgcaaatgacactaaaagtaacaaatgactg 33926131  T
Q  149 actgtcatca 158  Q
    ||||||||||    
T  33926130 actgtcatca 33926121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 29324088 - 29323977
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  29324088 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 29323990  T
Q  148 gactgtcatcaga 160  Q
    |||||||||||||    
T  29323989 gactgtcatcaga 29323977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 44809795 - 44809904
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  44809795 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 44809893  T
Q  148 gactgtcatca 158  Q
    |||||||||||    
T  44809894 gactgtcatca 44809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 12782197 - 12782106
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||||||||||||| ||||||||| |||||| |||||||| ||||||| || |||||||||||||||||||    
T  12782197 tttttcttgcttttcttgctgcttaagcttgcttgtaaactcaaaaatatcat-aaaatgactctaaaaatagcgaatgactgactgtcatca 12782106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 44164078 - 44164001
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| |||| ||||||||||||||||||| |||||| |||| |||  |||||| ||||||||||||||||||||||    
T  44164078 ttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaaagactttaaaaatagtgaatgactgactgtcatca 44164001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 3718427 - 3718336
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  ||| || |||||||||||||||||||| |||||||||| ||||| || ||||||| ||||||||| ||||||||||||    
T  3718427 tttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatatcataaaaat-actctaaaaatagtgaatgagtgactgtcatca 3718336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 15430674 - 15430766
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| || |||| |  |||||||||||||||||||    
T  15430674 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15430766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 15437288 - 15437380
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| || |||| |  |||||||||||||||||||    
T  15437288 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaaagactctgaaaataacgaatgactgactgtcatca 15437380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 21419070 - 21418987
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgac 150  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||||||||||| || |||||||||||    
T  21419070 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagacactaaaaatagcgaatgactgac 21418987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 27013321 - 27013229
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  ||| || |||||||||| ||||||||||||| |||||| |||| ||| ||||||| || |||||||||||||||||||    
T  27013321 tttttcttgcttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 27013229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 27677889 - 27677968
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcaga 160  Q
    |||||| |||| |||| |||||||||||||| |||||| |||| ||| ||||||| ||||||| ||||||||||||||||    
T  27677889 ttgctgcttaatcttgattgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaataactgactgtcatcaga 27677968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 153
Target Start/End: Original strand, 34320738 - 34320839
Alignment:
Q  52 cttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgac 150  Q
    |||||||||||| |||||||| || |||| ||  || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  ||||||||||    
T  34320738 cttcaaaatcttgtatttttcatgctttccttattgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgactgac 34320836  T
Q  151 tgt 153  Q
    |||    
T  34320837 tgt 34320839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 37741471 - 37741525
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 121  Q
    |||||||||||||  |||||| |||||||||||||||||||| ||||||||||||    
T  37741471 tttttcttgtttttcttgctgtttaagcttgcttgtgaactccaaatatcatgaa 37741525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 52007355 - 52007431
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaa-aatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| |||||||||||| ||||||||| |||||||| |||| ||| ||||||| || |||||||||||||||||||    
T  52007355 ttgctgcttaagcttgcttttgaactcaacaatatcataaaaa-gactctaaaaatagcgaatgactgactgtcatca 52007431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 15812973 - 15813041
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatca 117  Q
    ||||||||||||||| |||||||| || |||| ||| || |||| ||||||||||||||||||| ||||    
T  15812973 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaaacttgcttgtgaactcaaaacatca 15813041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 40794283 - 40794200
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgac 150  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| || |||||||||||    
T  40794283 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgactgac 40794200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 11863758 - 11863829
Alignment:
Q  159 gatatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtctttaattgcaaattatgctaaatg 230  Q
    ||||||||||| |||  |||||||||| |||||||||| |||||||||||||| || ||||| || ||||||    
T  11863758 gatatgcacataatgacttgattaactaggtgaaaatgtttaatcgtctttaaatgtaaattgtgttaaatg 11863829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 27691933 - 27692025
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||| |||||||||||| || |||||||| | |||| ||| ||||||| ||||||||||| | ||||||||    
T  27691933 tttttcttgcttttcttgctgcttaatcttgcttgtgaattcaaaaatatcgtaaaaaagactctaaaaatagtgaatgactaattgtcatca 27692025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 53010382 - 53010459
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||| |||| ||| ||||||||||||||| |||||| |||| ||| ||||||| | ||||||||||||| |||||||    
T  53010382 ttgctgcttaatcttacttgtgaactcaaaaatatcataaaaa-gactctaaaaataatgaatgactgactatcatcag 53010459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 19820020 - 19819949
Alignment:
Q  89 ttaagcttgcttgtgaactcaaaa--tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||| |||||||||||||||||||  |||||| |||| |||  |||||| || ||||||||||||||||||||    
T  19820020 ttaatcttgcttgtgaactcaaaaaatatcataaaaa-gactttaaaaatagcgaatgactgactgtcatcag 19819949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 18645584 - 18645742
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||    
T  18645584 tgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaagcttgttt 18645683  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18645684 gtgaacttgaaatatcatgaaaatgacactaaaaacagtgaatgactgattgtcatcag 18645742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 538172 - 538015
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||    
T  538172 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaaacttgttt 538073  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  538072 gtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 538015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 52198454 - 52198304
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  52198454 aaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttgctttctttgttgtttaagcttgcttgtgaactc 52198355  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  52198354 aaaatatcatgaaaatgacactaaacatagtgaatgactgactgtcatcag 52198304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 33 - 158
Target Start/End: Original strand, 10107489 - 10107614
Alignment:
Q  33 cgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaa 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  10107489 cgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaa 10107588  T
Q  133 aaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||    
T  10107589 aaacagtgaatgactgactgtcatca 10107614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 10884175 - 10884018
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||| |||| |||||||    
T  10884175 tgtgcttcaaatcgtgacaggttttcaacaatcgtgacacgattttgctttcttcgaaatcttctattttttttgttttcattgctgtttaaacttgctt 10884076  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  10884075 gtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10884018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 23299396 - 23299553
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||    
T  23299396 tgtgctccaaattgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttctcttgttttctttgctgtttaaacttgctt 23299495  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  23299496 gtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 23299553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 6922047 - 6921890
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| |||||||    
T  6922047 tgtgctccaaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttatatttctcttgttttctttgctgtttaaacttgctt 6921948  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||| | | ||||||| ||||||||||||||||||||||    
T  6921947 gtgaactcaaaatatcatgaaaaaggctctaaaaatagtgaatgactgactgtcatca 6921890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 17532565 - 17532670
Alignment:
Q  54 tcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgt 153  Q
    |||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17532565 tcaaaatcttctttttttcttgttttctttgttgtttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgt 17532664  T
Q  154 catcag 159  Q
     |||||    
T  17532665 aatcag 17532670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 35411827 - 35411723
Alignment:
Q  8 caaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttctt-gttttctttgctggttaagcttgcttgtgaac 106  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||||||||||||    
T  35411827 caaatcgtgacacgttttcgacaatcgtgacacgattttgctttcttcaaaatcttctatttttctttgttttctt-gctgcttaagtttgcttgtgaac 35411729  T
Q  107 tcaaaa 112  Q
    ||||||    
T  35411728 tcaaaa 35411723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 16185511 - 16185656
Alignment:
Q  13 cgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaa 111  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||||| ||||||||| |||||||||| |||    
T  16185511 cgtgacatgttttcaacaatcgtgacacgattttgctttcttcaaaatcttatatttttcttgcttttcttgctgcttaagcttgtttgtgaactcaaaa 16185610  T
Q  112 atatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||| |||| ||| |||||||    ||||||| |||||||||||    
T  16185611 atatcat-aaaaagactctaaaaatgtggaatgacagactgtcatca 16185656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 53815062 - 53814971
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  53815062 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagtgaatgactgactgtcatca 53814971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 22994435 - 22994569
Alignment:
Q  1 tgtgcttcaaatcgtgacac-tttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgct 99  Q
    |||||| ||||||||||||| ||||||||||| |||| ||| ||||  |||||  || |||||||  ||||||||| |||| |||||| |||||||||||    
T  22994435 tgtgctccaaatcgtgacacgtttttcaacaaccgtgtcactatttcactttcaccacaatcttcagtttttcttgctttccttgctgtttaagcttgct 22994534  T
Q  100 tgtgaactcaaaatatcatgaaaatgacactaaaaa 135  Q
    |||| |||||||||||||| || || ||||||||||    
T  22994535 tgtggactcaaaatatcat-aatattacactaaaaa 22994569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 29344622 - 29344774
Alignment:
Q  8 caaatcgtgacac-tttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaac 106  Q
    ||||||||| ||| |||||||| ||||||||||||||    |||| ||||   ||||| |||||||||| |||  |||||| |||| |||||||||||||    
T  29344622 caaatcgtgtcacgtttttcaataatcgtgacacgatccc-cttttttcagtttcttcaatttttcttgcttttcttgctgcttaatcttgcttgtgaac 29344720  T
Q  107 tcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||| |||||| | || ||| ||||||| |||||||||||||||||||||||    
T  29344721 tcaaaaatatcataagaaagactctaaaaatagtgaatgactgactgtcatcag 29344774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 55032789 - 55032833
Alignment:
Q  30 aatcgtgacacgattttgctttcttcaaaatcttctatttttctt 74  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55032789 aatcgtgacacgattttgctttcttcaaaatcttctatttttctt 55032833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 19302255 - 19302318
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 112  Q
    ||||||||||||||||||||||||| | |||| ||| || ||||||||||||||||||||||||    
T  19302255 tttcttcaaaatcttctatttttctcgctttccttgttgtttaagcttgcttgtgaactcaaaa 19302318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 158
Target Start/End: Complemental strand, 3839903 - 3839790
Alignment:
Q  48 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcat--gaaaatgacactaaaaacagtgaatg 144  Q
    ||||||||||  |||||  ||||||||| |||  |||||| |||||||||||||||||||| ||||||||||   ||||  || ||||||| ||||||||    
T  3839903 ctttcttcaatttcttcggtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcattaaaaaaaaactctaaaaatagtgaatg 3839804  T
Q  145 actgactgtcatca 158  Q
    ||||||||||||||    
T  3839803 actgactgtcatca 3839790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 30059979 - 30060050
Alignment:
Q  159 gatatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtctttaattgcaaattatgctaaatg 230  Q
    |||||||| ||| || |||||||||||  |||||||||||||||| ||||||| ||||||||||| ||||||    
T  30059979 gatatgcatatgttgaattgattaactaagtgaaaatgcttaatcttctttaaatgcaaattatgttaaatg 30060050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 54460436 - 54460366
Alignment:
Q  89 ttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    ||||| |||||||||||||||||| |||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  54460436 ttaagattgcttgtgaactcaaaaatatcataaaaa-gactctaaaaatagtgaatgactgactgtcatcag 54460366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 9380080 - 9380012
Alignment:
Q  89 ttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatc 157  Q
    |||||||||||||||||||| |||||||||| |||| ||| ||||||| || ||||||||||||||||||    
T  9380080 ttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgactgactgtcatc 9380012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 16243257 - 16243165
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    ||||||||| |||  |||||| |||| ||||||||||||||| |||||||||| |||| ||| ||||||| || |||||||||| |||||||||    
T  16243257 tttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgactgattgtcatcag 16243165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 20729400 - 20729477
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| ||||||||||||||||||| |||| |||||| ||||  || ||||||| || |||||||||||||||||||    
T  20729400 ttgctgcttaagcttgcttgtgaactaaaaaatatcataaaaaaaactctaaaaatagcgaatgactgactgtcatca 20729477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 19305445 - 19305501
Alignment:
Q  56 aaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 112  Q
    |||| ||||||||||||| | |||| |||||| ||||||||||||||||||||||||    
T  19305445 aaaaacttctatttttctcgctttccttgctgtttaagcttgcttgtgaactcaaaa 19305501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 17529585 - 17529546
Alignment:
Q  68 ttttcttgttttctttgctggttaagcttgcttgtgaact 107  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  17529585 ttttcttgttttctttgctgtttaagcttgcttgtgaact 17529546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 34984668 - 34984758
Alignment:
Q  68 ttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||| |||  ||| || |||| ||||||||||||||| |||||||||| |||| ||| ||||||| |  |||||||||||||||||||    
T  34984668 ttttcttgcttttcttgttgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaataacgaatgactgactgtcatca 34984758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 54736781 - 54736842
Alignment:
Q  89 ttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgac 150  Q
    |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||||||||| ||||    
T  54736781 ttaagcttgcttgtgaactcaaaagtatcat-aaaaagactctaaaaatagtgaatgattgac 54736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 5698386 - 5698427
Alignment:
Q  187 ggtgaaaatgcttaatcgtctttaattgcaaattatgctaaa 228  Q
    ||||||| ||||||||||||||||| |||||||| |||||||    
T  5698386 ggtgaaagtgcttaatcgtctttaaatgcaaattgtgctaaa 5698427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 9380180 - 9380143
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgatttt 46  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  9380180 aaatcgtgacacgttttcaacaaccgtgacacgatttt 9380143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 10880852 - 10880776
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| |||| ||||||||||||||| |||||||||| |||| ||| ||||||| ||  ||| ||||||||||||||    
T  10880852 ttgctgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcaaataactgactgtcatca 10880776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 41976397 - 41976321
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| |||| ||||||||||||||| ||||||| || ||||  || ||||||| || |||||||||||||||||||    
T  41976397 ttgctgtttaatcttgcttgtgaactcaaaaatattat-aaaaacactctaaaaatagcgaatgactgactgtcatca 41976321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 11636178 - 11636146
Alignment:
Q  89 ttaagcttgcttgtgaactcaaaatatcatgaa 121  Q
    |||||||||||||||||||| ||||||||||||    
T  11636178 ttaagcttgcttgtgaactctaaatatcatgaa 11636146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 18722152 - 18722310
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgct 99  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||     
T  18722152 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgca 18722251  T
Q  100 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18722252 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 18722310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 25595527 - 25595693
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgct 99  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||     
T  25595527 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgca 25595626  T
Q  100 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcagatatgca 166  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||    
T  25595627 tgtgaactcaaaatatcatgaaaatgacactaaaaacaatgaatgactgactgtcgtcagttatgca 25595693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 9 - 158
Target Start/End: Original strand, 33878089 - 33878238
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||    
T  33878089 aaattgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctgtttaaactttcttgtgaactc 33878188  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33878189 aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 33878238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 25592342 - 25592496
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgct 99  Q
    |||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||     
T  25592342 tgtgctccaaatcgggacacattttcaacaatcgtgacacgattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgca 25592441  T
Q  100 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25592442 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 25592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 10663168 - 10663011
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| |||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||||||    
T  10663168 tgtgctccaaatcatgacatgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgctgtttagacttgctt 10663069  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  10663068 gtgaactcaacatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 10663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 43682647 - 43682800
Alignment:
Q  8 caaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact 107  Q
    ||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||    
T  43682647 caaattgtgacacgttttcaataatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgctgtttaaacttgcttatgaact 43682746  T
Q  108 caaaatatcatg-aaaatgacactaaaaacagtgaatgactgactgtcatcaga 160  Q
    |||||||||||| ||||||| |||||||| |||||||||||||||| |||||||    
T  43682747 caaaatatcatgaaaaatgatactaaaaatagtgaatgactgactgccatcaga 43682800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45156761 - 45156872
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||  |||||| | ||||||||||    
T  45156761 tgtgctccaaatcgtgacacattttcaacaatcgtgacacgattgtgctttcttcaaaatcttctatttttcttgcttttcttgctgctaaagcttgctt 45156860  T
Q  101 gtgaactcaaaa 112  Q
    ||||||||||||    
T  45156861 gtgaactcaaaa 45156872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 5540838 - 5540949
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||  ||   |||||| ||| ||||||||    
T  5540838 tgtgcttcaaatcgtgacacgttttcaacaatcgtgacatgattttgcttccttcaaaatcttctatttttcttacttgtcttgctgcttatgcttgctt 5540937  T
Q  101 gtgaactcaaaa 112  Q
    ||||||||||||    
T  5540938 gtgaactcaaaa 5540949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 14421014 - 14420910
Alignment:
Q  8 caaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact 107  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||  ||| || |||||||||||||||||||    
T  14421014 caaatcgtgacacgttttcaacaatcgtgatacgattttgctttcttcaaaatcttatatttttcttgcttttcttgttgcttaagcttgcttgtgaact 14420915  T
Q  108 caaaa 112  Q
     ||||    
T  14420914 aaaaa 14420910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 25228169 - 25228060
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||  |||||  || |||||||||    
T  25228169 tgtgctccaaatcgtgacacgttttcagcaatcgagacacgatttt--tttcttcaaaatcttctatttttcttgtttttcttgcttcttgagcttgctt 25228072  T
Q  101 gtgaactcaaaa 112  Q
    ||||||||||||    
T  25228071 gtgaactcaaaa 25228060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 14589707 - 14589817
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| || |||| ||| ||  ||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||     
T  14589707 tttcttcaaaatcttgtatttttcatgctttccttgttgtgtaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataatgaatgacta 14589806  T
Q  149 actgtcatcag 159  Q
    ||| |||||||    
T  14589807 actatcatcag 14589817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 23612651 - 23612569
Alignment:
Q  76 ttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  23612651 ttttctttgctgtttaaacttgcttgtgaactcaaaatctcatcaaaatgacactaaaaatagtgaatgactgactgtcatca 23612569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 22174782 - 22174891
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||| |||| ||||||||||||||||| |||| | |||||| ||    
T  22174782 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaaacatcatgaaaatgacact-aaaataatgaatggct 22174880  T
Q  148 gactgtcatca 158  Q
    |||||||||||    
T  22174881 gactgtcatca 22174891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 158
Target Start/End: Original strand, 18826725 - 18826834
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || ||||| |||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  18826725 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagtttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 18826823  T
Q  148 gactgtcatca 158  Q
    |||||||||||    
T  18826824 gactgtcatca 18826834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 38249248 - 38249321
Alignment:
Q  48 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 121  Q
    ||||||||||||||||  | ||||| ||||||| |||||| ||||||||||||||||| |||||| ||||||||    
T  38249248 ctttcttcaaaatctttaacttttcatgttttccttgctgtttaagcttgcttgtgaattcaaaagatcatgaa 38249321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 19792990 - 19792925
Alignment:
Q  95 ttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||||||||||||||| |||||| |||| ||| ||||||| |||||||| | ||||||||||||    
T  19792990 ttgcttgtgaactcaaaaatatcataaaaaagactctaaaaatagtgaatggccgactgtcatcag 19792925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 30640583 - 30640505
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaaaa-tatcat-gaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| |||||||||||||||||||||||| ||||||  |||| ||  || |||| ||||||||| ||||||||||||    
T  30640583 ttgctgcttaagcttgcttgtgaactcaaaagtatcataaaaaaagattcttaaaatagtgaatgattgactgtcatca 30640505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 37681629 - 37681701
Alignment:
Q  48 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 121  Q
    ||||||||||||||||| | ||||| | ||||| |||||  |||||||| | ||||||||||||| ||||||||    
T  37681629 ctttcttcaaaatcttcaacttttcatattttccttgctctttaagcttac-tgtgaactcaaaagatcatgaa 37681701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 26556659 - 26556510
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||    
T  26556659 aaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgttgtttaagcttgcttgtgaactc 26556560  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26556559 aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 26556510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 10431535 - 10431386
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||    
T  10431535 aaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaatcttatatttttcttgttttctttgctgtttaaacttgcttgtgaactc 10431436  T
Q  109 aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10431435 aaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 10431386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 2442122 - 2442277
Alignment:
Q  3 tgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgt 102  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||| |||||||||    
T  2442122 tgcttcaaatcgtgatacgttttcaacaatcgtgacacgaatttgctttcctcagaatcttctatttttcttgttttctttgctgtttaaacttgcttgt 2442221  T
Q  103 gaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  2442222 gaactcaaaatatcatgaaaatgacacttaaaatagtgaatgactgactgtcatca 2442277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 4542229 - 4542074
Alignment:
Q  3 tgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgt 102  Q
    |||| |||||| |||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||    
T  4542229 tgctccaaatcatgacacattttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttttctttgctgtttaaacttgcttgt 4542130  T
Q  103 gaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4542129 gaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 4542074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 8276169 - 8276011
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| |||||||||| || |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||  |||||| || |||||||||    
T  8276169 tgtgctccaaatcgtgatacgttttcaacaatcatgacacgattttgttttcttcaaaatcttctatttttcttgcttttcttgctgcttgagcttgctt 8276070  T
Q  101 gtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||||| |||||||||| |||| ||| ||||||| |  ||||||| ||||||||||||    
T  8276069 gtgaactcaaaaatatcat-aaaaagactctaaaaatatggaatgacagactgtcatcag 8276011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 48644725 - 48644615
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| || ||||||||||||||||||| |  |||||||||    
T  48644725 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacattatgaaaatgacactaaaaataaagaatgactg 48644626  T
Q  149 actgtcatcag 159  Q
    |||||||||||    
T  48644625 actgtcatcag 48644615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 16164998 - 16164889
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| ||||||||||| |||||||||| |  |||||||||    
T  16164998 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaattacactaaaaataacgaatgactg 16164899  T
Q  149 actgtcatca 158  Q
    ||||||||||    
T  16164898 actgtcatca 16164889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 6602730 - 6602620
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| |  |||| ||| || ||||||||||||||||||| |||| || ||||| ||||||||||||| |  |||||||||    
T  6602730 tttcttcaaaatcttgtatttttcatactttccttgttgtttaagcttgcttgtgaacttaaaacattatgaacatgacactaaaaataacgaatgactg 6602631  T
Q  149 actgtcatcag 159  Q
    |||||||||||    
T  6602630 actgtcatcag 6602620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 48645852 - 48645922
Alignment:
Q  89 ttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||||||||||    
T  48645852 ttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactgtcatcag 48645922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 45288047 - 45288138
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  45288047 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagtgaatgactgactgtcatca 45288138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 45291383 - 45291474
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  45291383 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagtgaatgactgactgtcatca 45291474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 17730071 - 17729968
Alignment:
Q  60 tcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||| |||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| |||||| |||||||||||||||    
T  17730071 tcttcgatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaggactctaaaaatagtgaaagactgactgtcatca 17729973  T
Q  159 gatat 163  Q
     ||||    
T  17729972 tatat 17729968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 158
Target Start/End: Original strand, 20081530 - 20081640
Alignment:
Q  48 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgac 146  Q
    ||||||||||  ||||  |||||||||| |||  |||||| |||||||||||||||||||| |||||||||| ||||  || ||||||| ||||||||||    
T  20081530 ctttcttcaatttctttgatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaacactctaaaaatagtgaatgac 20081628  T
Q  147 tgactgtcatca 158  Q
    ||||||||||||    
T  20081629 tgactgtcatca 20081640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 20465610 - 20465539
Alignment:
Q  159 gatatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtctttaattgcaaattatgctaaatg 230  Q
    ||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||| || |||||||||    
T  20465610 gatatgcacatgatgtattgatttacttggtgaaaatccttaatagtctttaaatgcaatttgtgctaaatg 20465539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 9865493 - 9865643
Alignment:
Q  9 aaatcgtgacac-tttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact 107  Q
    |||||||| ||| |||||||| ||||||||||||||  | |||| ||||   |||||  ||||||||| |||  |||||| |||| ||||||||||||||    
T  9865493 aaatcgtgtcacgtttttcaataatcgtgacacgatcct-cttttttcattttcttcagtttttcttgcttttcttgctgcttaatcttgcttgtgaact 9865591  T
Q  108 c-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    | |||||||||| |||| ||| ||||||| || ||||||||||||||||||||    
T  9865592 caaaaatatcat-aaaaagactctaaaaatagcgaatgactgactgtcatcag 9865643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 9257455 - 9257384
Alignment:
Q  159 gatatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtctttaattgcaaattatgctaaatg 230  Q
    |||||||| ||| || ||||||||||| ||||||||||||| ||||||||||| || ||| | |||||||||    
T  9257455 gatatgcatatgttgaattgattaactaggtgaaaatgcttgatcgtctttaaatggaaaatgtgctaaatg 9257384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 9312798 - 9312869
Alignment:
Q  159 gatatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtctttaattgcaaattatgctaaatg 230  Q
    |||||||| ||| || ||||||||||| ||||||||||||| ||||||||||| || ||| | |||||||||    
T  9312798 gatatgcatatgttgaattgattaactaggtgaaaatgcttgatcgtctttaaatggaaaatgtgctaaatg 9312869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 11231020 - 11231071
Alignment:
Q  159 gatatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtcttta 210  Q
    ||||||||||||||| ||||||||| | |||||||||| |||| ||||||||    
T  11231020 gatatgcacatgatgaattgattaattaggtgaaaatgattaaccgtcttta 11231071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 9080467 - 9080422
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 112  Q
    ||||||||| |||  |||||| ||||||||||||||||||||||||    
T  9080467 tttttcttggttttcttgctgcttaagcttgcttgtgaactcaaaa 9080422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 9273885 - 9274000
Alignment:
Q  8 caaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact 107  Q
    ||||||||||||| ||||||  |||||||||| ||||   |||||||||   ||||| | |||||||  |||  ||| || |||||||||||||||||||    
T  9273885 caaatcgtgacacgttttcagtaatcgtgacatgattcc-ctttcttcagtttcttcaacttttctttcttttcttggtgcttaagcttgcttgtgaact 9273983  T
Q  108 -caaaatatcatgaaaa 123  Q
     ||||||||||| ||||    
T  9273984 ccaaaatatcataaaaa 9274000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 16202955 - 16202999
Alignment:
Q  186 tggtgaaaatgcttaatcgtctttaattgcaaattatgctaaatg 230  Q
    |||||||||| ||||||||||||||| | |||||| |||||||||    
T  16202955 tggtgaaaattcttaatcgtctttaaatccaaattgtgctaaatg 16202999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23388995 - 23389149
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgct 99  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||     
T  23388995 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaaatcttctatttttcttgttttctttgctgtttaagcttgca 23389094  T
Q  100 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23389095 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 23389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23379656 - 23379810
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgct 99  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||     
T  23379656 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgca 23379755  T
Q  100 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23379756 tgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtc 23379810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 5739034 - 5739190
Alignment:
Q  3 tgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgt 102  Q
    |||| ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||||||||    
T  5739034 tgctccaaatcgtgacatgtttttaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgctttctttgctgtttagacttgcttgt 5739133  T
Q  103 gaactcaaaatatcatg-aaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||| |||||||| ||||  || ||||||| ||||||||||||||||||||||    
T  5739134 gaactcaacatatcatgaaaaaaaactctaaaaatagtgaatgactgactgtcatca 5739190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 3 - 158
Target Start/End: Complemental strand, 34501569 - 34501416
Alignment:
Q  3 tgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgt 102  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||| |||| |||||||||    
T  34501569 tgctccaaatcgtgacacgttttcaacaatcgtgacacaattttgctttcatcaaaatcttctttttttcttgttttctttgctgtttaaacttgcttgt 34501470  T
Q  103 gaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||  || ||||||||||||||| |||||  |  ||||||| |||||||||||    
T  34501469 gaactc--aacatcatgaaaatgacattaaaattaacgaatgacggactgtcatca 34501416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 9953193 - 9953035
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||    
T  9953193 tgtgctccaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttggttttcttgctgcttaagcttgctt 9953094  T
Q  101 gtgaactc-aaaatatcatgaaaatgacactaaaaacagtg-aatgactgactgtcatcag 159  Q
    |||||||| |||||||||| |||| ||| |||||||  ||| |||||| ||||||||||||    
T  9953093 gtgaactcaaaaatatcat-aaaaagactctaaaaa-tgtgaaatgacagactgtcatcag 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 2371549 - 2371414
Alignment:
Q  22 ttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 121  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||||||||| ||    
T  2371549 ttttcaacaatcgtgatacgattttgctttcttcaaaatcttctatttttcttgttttatttgctgtttaaacttgcttatgaactcaaaatatcataaa 2371450  T
Q  122 aatgacactaaaaacagtgaatgactgactgtcatc 157  Q
    ||  ||| |||||| ||||||| ||| ||| |||||    
T  2371449 aaaaacattaaaaatagtgaataactaactatcatc 2371414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 31071603 - 31071494
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| || |||| ||| || ||||||||||| |||||||||||| |||||||||||||||||||||| |  |||||||||    
T  31071603 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgctcgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactg 31071504  T
Q  149 actgtcatca 158  Q
    ||||||||||    
T  31071503 actgtcatca 31071494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 13004509 - 13004433
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaat 124  Q
    ||||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||||    
T  13004509 tttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaat 13004433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 6512503 - 6512433
Alignment:
Q  51 tcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 121  Q
    |||||||||||||| | ||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  6512503 tcttcaaaatcttcaacttttcatgttttccttgctgtttaagcttgcttgtgaactcaaaagatcatgaa 6512433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 28666100 - 28666177
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| |  ||||||||||||||||||||    
T  28666100 ttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaataacgaatgactgactgtcatcag 28666177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 28112641 - 28112709
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatca 117  Q
    |||||||||||||||| | ||||| || |||| |||||  |||||||||||||||||||||||| ||||    
T  28112641 tttcttcaaaatcttcaacttttcatgctttccttgctttttaagcttgcttgtgaactcaaaagatca 28112709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 10289277 - 10289185
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    ||||||||| |||  ||| || |||| ||||||||||||||| |||||||||| |||| ||| ||||||| || |||||||| |||||||||||    
T  10289277 tttttcttgcttttcttgttgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgacttactgtcatcag 10289185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 12991556 - 12991617
Alignment:
Q  60 tcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaa 121  Q
    ||||| |||||||||| |||  ||| || |||||||||||||||||||| ||||||||||||    
T  12991556 tcttcaatttttcttgcttttcttgttgattaagcttgcttgtgaactccaaatatcatgaa 12991617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 14282373 - 14282445
Alignment:
Q  48 ctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatga 120  Q
    ||||||||||||| ||| | ||||| ||||||| |||||| || |||||||| || ||||||||| |||||||    
T  14282373 ctttcttcaaaattttcaacttttcatgttttccttgctgttttagcttgctcgtaaactcaaaagatcatga 14282445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 13004611 - 13004643
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacg 41  Q
    |||||||||||| ||||||||||||||||||||    
T  13004611 aaatcgtgacacgttttcaacaatcgtgacacg 13004643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 13022212 - 13022244
Alignment:
Q  89 ttaagcttgcttgtgaactcaaaatatcatgaa 121  Q
    |||||||||||||||||||| ||||||||||||    
T  13022212 ttaagcttgcttgtgaactccaaatatcatgaa 13022244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 61754 - 61597
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||    
T  61754 tgtgtttcaaatcgtgacacgttttcgacaatcgtgacacgattttgctttctttaaaatcttctatttctcttgatttctttgttgtttaagcttgctt 61655  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61654 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 61597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 49499413 - 49499568
Alignment:
Q  3 tgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgt 102  Q
    |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||    
T  49499413 tgctccaaatcgtgacacgttttcaacaatcgtgacatgattttgctttcttcaaaatcttctatttttcttgttttctttgttgtttaagcttgcatgt 49499512  T
Q  103 gaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  49499513 gaactcaaaatatcatgaaaataacactaaaaacagcgaatgactgactgtcatca 49499568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2793456 - 2793299
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||||    
T  2793456 tgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgttttctttactgtttaaacttgctt 2793357  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||||||| |||| ||| ||||||| |||||| |||||||||||||||    
T  2793356 gtgaactcaaaatatcattaaaaagactctaaaaatagtgaacgactgactgtcatca 2793299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 1951190 - 1951345
Alignment:
Q  3 tgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgt 102  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| |||| |||||||||    
T  1951190 tgctccaaatcgtgacacgttttcaacaatcgtgacacgattttgctttctttgaaatcttctatttttcttgttttctttgctgtttaaacttgcttgt 1951289  T
Q  103 gaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  1951290 gaactcaagatatcatgaaaatgatacttaaaatagtgaatgactgactgtcatca 1951345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 29644151 - 29644262
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| |||||||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||| ||||||| ||||| ||||||    
T  29644151 tgtgctccaaatcgtgatacgttttcaacaatcgtgacacgattttactttcttcaaagtcttctatttttcttgctttttttgctgcttaagtttgctt 29644250  T
Q  101 gtgaactcaaaa 112  Q
    ||||||||||||    
T  29644251 gtgaactcaaaa 29644262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 31204123 - 31204013
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| || ||||||||||||||||||| |  |||||||||    
T  31204123 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacataatgaaaatgacactaaaaataaagaatgactg 31204024  T
Q  149 actgtcatcag 159  Q
    ||| |||||||    
T  31204023 actatcatcag 31204013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 34733106 - 34733223
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| |||||| |||||  ||||||||||||||| ||||||||| ||||||||||||||||| | ||||| || |||| || ||| |||| |||||||    
T  34733106 tgtgctccaaatcctgacatgttttcaacaatcgtgtcacgattttactttcttcaaaatcttcaacttttcatgatttccttactgtttaatcttgctt 34733205  T
Q  101 gtgaactcaaaatatcat 118  Q
    |||||||||||| |||||    
T  34733206 gtgaactcaaaagatcat 34733223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 6071791 - 6071896
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| ||||||  ||| || |||||||||||||||||||||||| | ||||||||||||     ||| | ||||||||||    
T  6071791 tttcttcaaaatcttgtatttttcatgtttttcttgttgtttaagcttgcttgtgaactcaaaacaacatgaaaatgac-----aaataatgaatgactg 6071885  T
Q  149 actgtcatcag 159  Q
    |||||||||||    
T  6071886 actgtcatcag 6071896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 60 - 159
Target Start/End: Original strand, 41059135 - 41059235
Alignment:
Q  60 tcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||| |||||||||| |||  |||||| ||||||||||||| |||||||||| |||||| |||| ||| ||||||| || |||||||||||||||||||    
T  41059135 tcttcgatttttcttgcttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 41059234  T
Q  159 g 159  Q
    |    
T  41059235 g 41059235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 45961598 - 45961708
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| || | ||| ||||||| ||  |||||||    
T  45961598 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aacaagactctaaaaatagcaaatgact 45961696  T
Q  148 gactgtcatcag 159  Q
    ||||||||||||    
T  45961697 gactgtcatcag 45961708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 27537104 - 27537212
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| |||  |||||| ||  |||||||    
T  27537104 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactataaaaatagcaaatgact 27537202  T
Q  148 gactgtcatc 157  Q
    ||||||||||    
T  27537203 gactgtcatc 27537212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 2404798 - 2404722
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| |||| ||||||||||||||||||| ||| || |||| ||| ||||||| || |||||||||||||||||||    
T  2404798 ttgctgcttaatcttgcttgtgaactcaaaaatattataaaaa-gactctaaaaatagcgaatgactgactgtcatca 2404722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 21019292 - 21019367
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| ||||||||| ||| |||||||||| |||||| |||  ||| ||||||| || |||||||||||||||||||    
T  21019292 ttgctgcttaagcttggttgcgaactcaaaaatatcataaaa--gactctaaaaatagcgaatgactgactgtcatca 21019367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 42021812 - 42021721
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactca-aaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||| ||||||||||||||||  ||||| || |||| ||| ||||||| || |||||| ||||||||||||    
T  42021812 tttttcttgcttttattgctgcttaaacttgcttgtgaactcagtaatattat-aaaaagactctaaaaatagcgaatgattgactgtcatca 42021721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 26358829 - 26358672
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||| |||    
T  26358829 tgtgctccaaatcgtgccacgttttcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgtcttctttgctgtttaaacttcctt 26358730  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26358729 gtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 26358672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 36809278 - 36809435
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||    
T  36809278 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttttctttgttgtttaaacttgctt 36809377  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36809378 gtgaactcaaaatatcatgaaaatgacactaaaaatagtgaatgactgactgtcatca 36809435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 38006129 - 38006286
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||||||| ||    
T  38006129 tgtgctccaaatcgtgacacgttttcgacaatcgtcacacgattttgctttcttcaaaatcttctatttctcttgctttctttgttgtttaagcttgttt 38006228  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38006229 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtaatca 38006286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 25821767 - 25821922
Alignment:
Q  8 caaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgcttgtgaac 106  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||    
T  25821767 caaatcgtgacaccttttcaacaatcttgacacgattttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgcttgtgaac 25821866  T
Q  107 tcaaa----atatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  25821867 tcaaaatatatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 25821922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 25869992 - 25869835
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||| ||| |||    
T  25869992 tgtgctccaaatcgtgacacgttttcgacaatcgtgacacgatttttctttcttcaaaatcttctatttctcttgttttctttgttgtttaaactttctt 25869893  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25869892 gtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25869835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 25873360 - 25873203
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| |||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |||| |||||||    
T  25873360 tgtgctccaaatcatgacacgttttcgacaatcgtgacacgatttttctttcttcaaaatcttctatttctcttgttttctttgttgtttaaacttgctt 25873261  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25873260 gtgaactcaaaatatcatgaaaaagactctaaaaatagtgaatgactgactgtcatca 25873203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 8 - 158
Target Start/End: Original strand, 30275541 - 30275691
Alignment:
Q  8 caaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaact 107  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||| |||| ||||||| |    
T  30275541 caaatcgtgacacgttttcaacaatcgtgacacgaatttgctttcctcaaaatcttctatttttcttgttttctttgttgtttaaacttgtttgtgaatt 30275640  T
Q  108 caaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  30275641 caaaatatcatgaaaatgacactaaaaatattgaatgactgactatcatca 30275691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 15466298 - 15466170
Alignment:
Q  30 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 129  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  15466298 aatcgtgacacgattttgctttcttcaaaatcttctatttctcttgatttctttgttgtttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 15466199  T
Q  130 taaaaacagtgaatgactgactgtcatca 158  Q
    |||||| ||||||||||||| ||||||||    
T  15466198 taaaaatagtgaatgactgattgtcatca 15466170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 25139883 - 25139994
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| | |||||||| |||    
T  25139883 tgtgctccaaatcgtgacacgttgtcaacaatcgtgacacgattttgctttcttcgaaatcttctatttttcttgctttctttgccgtttaagcttactt 25139982  T
Q  101 gtgaactcaaaa 112  Q
    ||||||||||||    
T  25139983 gtgaactcaaaa 25139994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 30 - 158
Target Start/End: Complemental strand, 29439723 - 29439597
Alignment:
Q  30 aatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacac 129  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||  || ||||||||||||||||    
T  29439723 aatcgtgacacgattttgctttcttcgaaatcttctttttttcttgttttctttgctgtttaaacttgcttgtgaactc--aacatcatgaaaatgacac 29439626  T
Q  130 taaaaacagtgaatgactgactgtcatca 158  Q
    |||||  |  ||||||| |||||||||||    
T  29439625 taaaattaacgaatgacggactgtcatca 29439597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 16788537 - 16788389
Alignment:
Q  9 aaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc 108  Q
    |||||||||||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| |||  ||| || ||||||||||||||||||||    
T  16788537 aaatcgtgacacgttttcaacaatcgtgacacgattgtgctttcatcaaaatcttatatttttcttgcttttcttgttgcttaagcttgcttgtgaactc 16788438  T
Q  109 aaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||| ||||||  ||| ||  ||||||| ||  ||||||||||||||||||    
T  16788437 aaaattatcat--aaaagattctaaaaatagcaaatgactgactgtcatca 16788389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 36985626 - 36985732
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    |||||||||||||||||||||||  || |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  |||||||||    
T  36985626 tttcttcaaaatcttctattttttctgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactg 36985725  T
Q  149 actgtca 155  Q
    |||||||    
T  36985726 actgtca 36985732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 45456409 - 45456300
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| || |||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||| |||    
T  45456409 tttcttcaaaatcttgtatttttcatgctttctttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatggctg 45456310  T
Q  149 actgtcatca 158  Q
    | ||||||||    
T  45456309 attgtcatca 45456300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 45453160 - 45453050
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactg 148  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||||||||||| ||||||| |  |||||||||    
T  45453160 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgaccctaaaaataaagaatgactg 45453061  T
Q  149 actgtcatcag 159  Q
    | |||||||||    
T  45453060 attgtcatcag 45453050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 38014745 - 38014636
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  38014745 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 38014647  T
Q  148 gactgtcatca 158  Q
    |||||||||||    
T  38014646 gactgtcatca 38014636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 10600042 - 10599951
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||| |||| ||  ||||||| ||||||||||||||||||||||    
T  10600042 tttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagattctaaaaatagtgaatgactgactgtcatca 10599951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 31430529 - 31430639
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||||||||||| |||||||| || |||| ||| || |||||||||||||||||||||||| |||||| |||| ||| ||||||| ||  |||||||    
T  31430529 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaattatcat-aaaaagactctaaaaatagcaaatgact 31430627  T
Q  148 gactgtcatcag 159  Q
     |||||||||||    
T  31430628 aactgtcatcag 31430639  T

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Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 5665905 - 5665830
Alignment:
Q  83 tgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| || |||||| ||||||||||||    
T  5665905 tgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagcgaatgattgactgtcatca 5665830  T

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Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 9961241 - 9961189
Alignment:
Q  159 gatatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtctttaa 211  Q
    |||||||| |||| ||||| ||||||||||| |||||||||||||||||||||    
T  9961241 gatatgcatatgaggtatttattaacttggttaaaatgcttaatcgtctttaa 9961189  T

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Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 31428340 - 31428404
Alignment:
Q  49 tttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaat 113  Q
    ||||||||||||||| |||||||| || |||| ||| || |||| ||||||||||||||||||||    
T  31428340 tttcttcaaaatcttgtatttttcatgctttccttgttgtttaaacttgcttgtgaactcaaaat 31428404  T

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Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 3874573 - 3874482
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||| |||| |||||||||||||| |||| | |||| ||| ||||||| | ||||||||||||||||||||    
T  3874573 tttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatcctaaaaa-gactctaaaaataatgaatgactgactgtcatca 3874482  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 5105027 - 5104952
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatcag 159  Q
    |||||| |||| ||||||||||||||||||| |||||| ||||  || |||||||  ||||||||||||||||||||||    
T  5105027 ttgctgcttaatcttgcttgtgaactcaaaaatatcataaaaaa-actctaaaaa--gtgaatgactgactgtcatcag 5104952  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 13136853 - 13136764
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcat 156  Q
    ||||||||| |||  |||||| |||| |||| |||||||||| |||||||||| |||||||| ||||||| |   ||||||||||||||||    
T  13136853 tttttcttgcttttcttgctgcttaatcttgtttgtgaactcaaaaatatcat-aaaatgactctaaaaataacaaatgactgactgtcat 13136764  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 43722980 - 43722904
Alignment:
Q  82 ttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||| |||| ||||||||||||||| |||||||||| |||| ||| ||||||| |  |||||| ||||||||||||    
T  43722980 ttgctgcttaatcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaataacgaatgattgactgtcatca 43722904  T

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Target: scaffold0005 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 291120 - 290974
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgctt 100  Q
    |||||| ||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||    
T  291120 tgtgctccaaatcgtgacacgttttcaacaatcgtgacacaaatttgctttcctcaaaatcttctatttttcttgttttctttgttgtttaaacttgctt 291021  T
Q  101 gtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgact 147  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||    
T  291020 gtgaacttaaaatatcatgaaaatgacactaaaaatagtgaatgact 290974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 112
Target Start/End: Original strand, 246232 - 246304
Alignment:
Q  40 cgattttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa 112  Q
    |||||||||||||||||||||||||||||||||||| |||  |||||| ||||||||||||||||||||||||    
T  246232 cgattttgctttcttcaaaatcttctatttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaa 246304  T

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Target: scaffold0334 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 34 - 159
Target Start/End: Complemental strand, 18588 - 18462
Alignment:
Q  34 gtgacacgattttgctttcttcaaaa-tcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaa 132  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||    
T  18588 gtgacacgtttttgctttcttcaaaaatcttctatttttcttgttttctttgttgtttaagcttgcatgtgaactcaaaatatcatgaaaatgacactaa 18489  T
Q  133 aaacagtgaatgactgactgtcatcag 159  Q
    |||||||||||||||||||||||||||    
T  18488 aaacagtgaatgactgactgtcatcag 18462  T

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Target: scaffold0045 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 89071 - 88965
Alignment:
Q  52 cttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgact 151  Q
    ||||||||||||||||||||| || |||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||    
T  89071 cttcaaaatcttctatttttcatgctttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataacgaatgactgact 88972  T
Q  152 gtcatca 158  Q
    |||||||    
T  88971 gtcatca 88965  T

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Target: scaffold0080 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26402 - 26331
Alignment:
Q  1 tgtgcttcaaatcgtgacactttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttc 72  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26402 tgtgcttcaaatcgtgacacgttttcaacaatcgtgacacgattttgctttcttcaaaatcttctatttttc 26331  T

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Target: scaffold1684 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 369 - 474
Alignment:
Q  53 ttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactcaaaatatcatgaaaatgacactaaaaacagtgaatgactgactg 152  Q
    ||||||||||| |||||||| ||  ||| ||| || |||||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||||     
T  369 ttcaaaatcttgtatttttcatgcgttccttgttgtttaagcttgcttgtgaactcaaaacatcatgaaaatgacactaaaaataaagaatgactgactt 468  T
Q  153 tcatca 158  Q
    ||||||    
T  469 tcatca 474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 367389 - 367451
Alignment:
Q  169 tgatgtattgattaacttggtgaaaatgcttaatcgtctttaattgcaaattatgctaaatgt 231  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  367389 tgatgaattgattaacttggtgaaaatgcttaatcgtctttaattgcaaattatgataaatgt 367451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 197358 - 197242
Alignment:
Q  42 attttgctttcttcaaaatcttctatttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtg 140  Q
    ||||| |||||||||||||||||||||||||||| |||  |||||| ||| |||||||||||||||| |||||||||| |||| ||| |||||||    |    
T  197358 attttactttcttcaaaatcttctatttttcttgcttttcttgctgcttatgcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatgtgg 197260  T
Q  141 aatgactgactgtcatca 158  Q
    |||||| |||||||||||    
T  197259 aatgacagactgtcatca 197242  T

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Target: scaffold0757 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 4654 - 4563
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||| ||||||||||||||||||||||    
T  4654 tttttcttgattttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaaatagtgaatgactgactgtcatca 4563  T

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Target: scaffold0381 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 6462 - 6554
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactcaaaa-tatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  ||| || |||||||||| ||||||||||||| |||||| |||| ||| ||||||| || |||||||||||||||||||    
T  6462 tttttcttgcttttcttgttgcttaagcttgcctgtgaactcaaaaatatcataaaaaagactctaaaaatagcgaatgactgactgtcatca 6554  T

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Target: scaffold0270 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 969 - 1060
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| ||||| || ||||||  || |||||||||||||||||||    
T  969 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaat-actctaaaagtagcgaatgactgactgtcatca 1060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 4329 - 4420
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||  || ||||||||||||| |||||    
T  4329 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaagtagcgaatgactgactgacatca 4420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 11459 - 11550
Alignment:
Q  67 tttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    ||||||||| |||  |||||| |||||||||||||||||||| |||||||||| |||| ||| ||||||  || ||||||||||||| |||||    
T  11459 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcat-aaaaagactctaaaagtagcgaatgactgactgacatca 11550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 8837 - 8785
Alignment:
Q  159 gatatgcacatgatgtattgattaacttggtgaaaatgcttaatcgtctttaa 211  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  8837 gatatgcacatgatgtaccaattaacttggtgaaaatgcttaatcgtctttaa 8785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 4790 - 4880
Alignment:
Q  68 ttttcttgttttctttgctggttaagcttgcttgtgaactc-aaaatatcatgaaaatgacactaaaaacagtgaatgactgactgtcatca 158  Q
    |||||||  ||| ||||||| |||| |||| |||||||||| |||||||||| |||| ||| ||||||| |  |||||||||||||||||||    
T  4790 ttttctttctttttttgctgcttaatcttgtttgtgaactcaaaaatatcat-aaaaagactctaaaaataacgaatgactgactgtcatca 4880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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