View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2166_high_2 (Length: 375)

Name: NF2166_high_2
Description: NF2166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2166_high_2
NF2166_high_2
[»] chr6 (9 HSPs)
chr6 (15-257)||(21535678-21535920)
chr6 (15-257)||(18132989-18133231)
chr6 (15-257)||(18131783-18132025)
chr6 (57-257)||(21395592-21395792)
chr6 (152-256)||(7033339-7033443)
chr6 (15-129)||(7033443-7033557)
chr6 (278-375)||(28889777-28889874)
chr6 (145-257)||(4303040-4303152)
chr6 (151-257)||(16189671-16189779)
[»] chr5 (12 HSPs)
chr5 (15-257)||(22950233-22950475)
chr5 (15-257)||(19934526-19934768)
chr5 (30-257)||(29526039-29526267)
chr5 (30-257)||(29527252-29527480)
chr5 (18-257)||(39701589-39701832)
chr5 (18-257)||(39702819-39703062)
chr5 (38-257)||(41050926-41051152)
chr5 (148-257)||(19139374-19139483)
chr5 (281-371)||(5033188-5033276)
chr5 (145-257)||(35144500-35144613)
chr5 (56-111)||(33215264-33215321)
chr5 (145-174)||(37473631-37473660)
[»] chr3 (16 HSPs)
chr3 (15-257)||(54994579-54994821)
chr3 (25-257)||(7197692-7197928)
chr3 (79-257)||(45826153-45826331)
chr3 (15-257)||(2386293-2386543)
chr3 (81-255)||(592537-592711)
chr3 (81-257)||(48637539-48637715)
chr3 (38-257)||(40976771-40977001)
chr3 (259-375)||(39984838-39984954)
chr3 (259-375)||(39983777-39983893)
chr3 (95-230)||(51274436-51274571)
chr3 (260-375)||(41968222-41968336)
chr3 (299-365)||(14414236-14414302)
chr3 (56-111)||(25184672-25184729)
chr3 (145-205)||(16772790-16772848)
chr3 (146-206)||(49987228-49987286)
chr3 (147-175)||(54886899-54886927)
[»] chr1 (19 HSPs)
chr1 (15-257)||(8089720-8089962)
chr1 (15-257)||(10582670-10582912)
chr1 (15-257)||(10583876-10584118)
chr1 (40-257)||(49122123-49122340)
chr1 (15-257)||(49123232-49123474)
chr1 (15-230)||(49121909-49122124)
chr1 (81-257)||(8788534-8788710)
chr1 (259-375)||(8090075-8090191)
chr1 (260-375)||(172894-173009)
chr1 (259-375)||(27962651-27962767)
chr1 (259-375)||(48907335-48907451)
chr1 (56-229)||(23540999-23541176)
chr1 (142-256)||(23540880-23540998)
chr1 (145-257)||(3815222-3815335)
chr1 (153-217)||(19950378-19950442)
chr1 (145-257)||(36346541-36346653)
chr1 (146-195)||(17826222-17826271)
chr1 (146-208)||(30038108-30038170)
chr1 (145-187)||(40670604-40670646)
[»] chr7 (7 HSPs)
chr7 (15-257)||(6081171-6081413)
chr7 (15-257)||(6082378-6082620)
chr7 (259-375)||(13077530-13077646)
chr7 (259-375)||(13078591-13078707)
chr7 (145-257)||(17901159-17901273)
chr7 (144-251)||(27021363-27021468)
chr7 (145-206)||(30640722-30640782)
[»] scaffold0011 (2 HSPs)
scaffold0011 (15-257)||(205590-205832)
scaffold0011 (81-257)||(211667-211843)
[»] chr4 (10 HSPs)
chr4 (15-257)||(11962000-11962242)
chr4 (260-375)||(54938863-54938978)
chr4 (87-257)||(3567008-3567178)
chr4 (88-173)||(45638746-45638831)
chr4 (289-375)||(54937822-54937908)
chr4 (142-205)||(27869371-27869434)
chr4 (200-242)||(45638710-45638752)
chr4 (146-208)||(32992387-32992448)
chr4 (158-208)||(36982313-36982362)
chr4 (56-111)||(25542486-25542543)
[»] chr2 (14 HSPs)
chr2 (15-257)||(33789849-33790094)
chr2 (259-375)||(14684556-14684672)
chr2 (259-375)||(14685617-14685733)
chr2 (259-375)||(21306412-21306528)
chr2 (259-375)||(30246458-30246574)
chr2 (51-257)||(12324855-12325068)
chr2 (259-375)||(4517277-4517393)
chr2 (259-375)||(21307469-21307585)
chr2 (259-375)||(40421380-40421496)
chr2 (259-375)||(40422439-40422555)
chr2 (56-183)||(18955376-18955505)
chr2 (146-206)||(13218743-13218802)
chr2 (130-174)||(3302449-3302494)
chr2 (150-206)||(42599698-42599753)
[»] scaffold0227 (2 HSPs)
scaffold0227 (15-257)||(12195-12436)
scaffold0227 (38-257)||(11065-11288)
[»] scaffold0018 (1 HSPs)
scaffold0018 (15-232)||(177889-178106)
[»] scaffold0026 (2 HSPs)
scaffold0026 (81-257)||(80753-80929)
scaffold0026 (81-252)||(79557-79728)
[»] chr8 (13 HSPs)
chr8 (51-257)||(40254410-40254615)
chr8 (259-375)||(45036197-45036313)
chr8 (259-371)||(13255565-13255677)
chr8 (146-254)||(21661182-21661290)
chr8 (259-375)||(6540610-6540728)
chr8 (55-257)||(2411062-2411264)
chr8 (183-257)||(26246969-26247043)
chr8 (146-208)||(5176597-5176658)
chr8 (150-208)||(26187541-26187599)
chr8 (130-230)||(13260936-13261037)
chr8 (56-111)||(36241268-36241325)
chr8 (147-179)||(19729212-19729244)
chr8 (145-205)||(43506411-43506470)
[»] scaffold0063 (1 HSPs)
scaffold0063 (146-177)||(33903-33934)


Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 21535678 - 21535920
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21535678 ataagtaactgttacttgtatgtagtaattgctgtctactaaacttctatgtaacagctataggaattagtattataaataagatgcagaggaaaagaaa 21535777  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  21535778 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatat 21535877  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  21535878 tgtaatcttactattagtttatattttgatatcagttcctatc 21535920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 18133231 - 18132989
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18133231 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaa 18133132  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  18133131 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatat 18133032  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18133031 tgtaatcttactattagtttatattttgatatcagttcctatc 18132989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 18132025 - 18131783
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  18132025 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaa 18131926  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||||||||    
T  18131925 ggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaagggagagaaccaagactctcgaatttcttgggattatat 18131826  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18131825 tgtaatcttactattagtttatattttgatatcagttcctatc 18131783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 57 - 257
Target Start/End: Complemental strand, 21395792 - 21395592
Alignment:
Q  57 acttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagacca 156  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  21395792 acttctatgtaacagccataggatttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggattggtagggagagacca 21395693  T
Q  157 agctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctat 256  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||    
T  21395692 agctctcgaattcttggaggggagacaaccaagactcttgaatttcttgggattatattataatcttactgttagtttatattttgatatcagtttctat 21395593  T
Q  257 c 257  Q
    |    
T  21395592 c 21395592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 7033443 - 7033339
Alignment:
Q  152 gaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagtt 251  Q
    ||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7033443 gaccaagctttcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagtt 7033344  T
Q  252 cctat 256  Q
    |||||    
T  7033343 cctat 7033339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 7033557 - 7033443
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  7033557 ataagtaactgttacttgtgtgtagtaattgttgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaa 7033458  T
Q  115 ggtattcagggattg 129  Q
    |||||||||||||||    
T  7033457 ggtattcagggattg 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 278 - 375
Target Start/End: Complemental strand, 28889874 - 28889777
Alignment:
Q  278 catctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgtaatcaaagggattttccc 375  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||| ||||| ||||||||||||| ||||||||||    
T  28889874 catctgaggatttgactgggaaggggtcattttggcattagggagttgcagaccctcaaagttctgcgatattattctgtaatcaaatggattttccc 28889777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 4303040 - 4303152
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgat 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||| | ||| ||||| |||  ||||||||    
T  4303040 agggagagaccaagctctcgaattcttggaggggagagaaccaagactctagaatttcttgggaatctattgtattattaatattaatttggattttgat 4303139  T
Q  245 atcagttcctatc 257  Q
    | ||||| |||||    
T  4303140 accagtttctatc 4303152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 16189671 - 16189779
Alignment:
Q  151 agaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttata--ttttgatatca 248  Q
    ||||||||||||||||||||||||||||||||||||||  ||||  | || | ||||||| ||||||||| ||||||||| ||||||  |||||||||||    
T  16189671 agaccaagctctcgaattcttggaggggagagaaccaacactctcaatttccatgggattctattgtaatattactattaatttatatgttttgatatca 16189770  T
Q  249 gttcctatc 257  Q
    ||| |||||    
T  16189771 gtttctatc 16189779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 22950233 - 22950475
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||    
T  22950233 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaataaa 22950332  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||    
T  22950333 ggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatat 22950432  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22950433 tgtaatcttactattagtttatattttgatatcagttcctatc 22950475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 19934526 - 19934768
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| |||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  19934526 ataagtaactgttacttgtgtgtagtaattgccgtctactaaacttctatgtaacaactataagacttagtattataaataagatgcagaggaaaagaaa 19934625  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    || ||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||    
T  19934626 ggcatttagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactcttgaatttcttgggattatat 19934725  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19934726 tgtaatcttactattagtttatattttgatatcagttcctatc 19934768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 29526267 - 29526039
Alignment:
Q  30 ttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattg 129  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29526267 ttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattg 29526168  T
Q  130 ggat-aaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactat 228  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  29526167 ggattaaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcggatttcttgggattatattgtaatcttactat 29526068  T
Q  229 tagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||    
T  29526067 tagtttatattttgatatcagttcctatc 29526039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 29527480 - 29527252
Alignment:
Q  30 ttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattg 129  Q
    |||| ||||||||||||||| |||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29527480 ttgtgtgtagtaattgctgtctactaaacttctatgtaacagctattggacttagtattttaaataagatgcagaggaaaagaaaggtattcagggattg 29527381  T
Q  130 ggataaaggataggtagggagagaccaagctctcgaattcttgga-ggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactat 228  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  29527380 ggataaaggattggtagggagagaccaagctcttgaattcttggagggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactat 29527281  T
Q  229 tagtttatattttgatatcagttcctatc 257  Q
    ||||||||||||||||||| |||||||||    
T  29527280 tagtttatattttgatatctgttcctatc 29527252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 39701832 - 39701589
Alignment:
Q  18 agtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaa 113  Q
    |||||| ||||||| | || |||||||||||| |||||||||||||||||||  ||||||||     |||||||||||||||||||||||||||||||||    
T  39701832 agtaactgttacttatgtgcagtaattgctgtctactaaacttctatgtaactgctataggagagagttagtattataaataagatgcagaggaaaagaa 39701733  T
Q  114 aggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattata 213  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  39701732 aggcattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattata 39701633  T
Q  214 ttgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39701632 ttgtaatcttactattagtttatattttgatatcagttcctatc 39701589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 39703062 - 39702819
Alignment:
Q  18 agtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaa 113  Q
    |||||| ||||||| | || |||| ||||||| |||||||||||||||||||  ||||||||     || |||||||||||||| |||| ||||||||||    
T  39703062 agtaactgttacttatgtgcagtatttgctgtctactaaacttctatgtaactgctataggagagagtttgtattataaataagttgcaaaggaaaagaa 39702963  T
Q  114 aggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattata 213  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||    
T  39702962 aggcattcagggattgggataaaggatcggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattata 39702863  T
Q  214 ttgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39702862 ttgtaatcttactattagtttatattttgatatcagttcctatc 39702819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 257
Target Start/End: Complemental strand, 41051152 - 41050926
Alignment:
Q  38 agtaattgctgtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggat 133  Q
    |||| ||||| | |||||||||||||||||||   |||||||     |||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  41051152 agtagttgctatctactaaacttctatgtaactgatataggagagagttagtattataaataagatgcagaggaaaagacagatattcagggattgggat 41051053  T
Q  134 aaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctct-agaatttcttgggattatattgtaat-cttactattag 231  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||  ||||||||||||||| |||||| ||  ||||||| |     
T  41051052 aaaggataggtagggagagaccaagctcttgaattcttggaggggacagaaccaagactctcggaatttcttgggattctattgtgataattactataaa 41050953  T
Q  232 tttat-attttgatatcagttcctatc 257  Q
    ||||| ||||||||||||||| |||||    
T  41050952 tttataattttgatatcagtttctatc 41050926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 148 - 257
Target Start/End: Original strand, 19139374 - 19139483
Alignment:
Q  148 gagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatc 247  Q
    |||| ||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19139374 gagaaaccaagctctctaattcttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttaaattttgatatc 19139473  T
Q  248 agttcctatc 257  Q
    |||| |||||    
T  19139474 agtttctatc 19139483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 281 - 371
Target Start/End: Original strand, 5033188 - 5033276
Alignment:
Q  281 ctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgtaatcaaagggattt 371  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||  || || ||||||||||||||||||||    
T  5033188 ctgaggatttgactgggaaggggccattttggc-atagggaggtgcagagcctcaaagttctgtgatgtt-ttctgtaatcaaagggattt 5033276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 35144613 - 35144500
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggatta-tattgtaatcttactattagtttatattttga 243  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |||  | ||||||| | ||| ||||| |||  |||||||    
T  35144613 agggagagaccaaggtctcgaattcttggaggggagagaaccaagactctcgaatttcttaggaaaactattgtattattaatattaatttgaattttga 35144514  T
Q  244 tatcagttcctatc 257  Q
    |||||||| |||||    
T  35144513 tatcagtttctatc 35144500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 33215321 - 33215264
Alignment:
Q  56 aacttctatgtaacaactatag-gaattagtattataaataa-gatgcagaggaaaag 111  Q
    ||||||||||||||  |||||| || |||||||||||||||| |||||||||||||||    
T  33215321 aacttctatgtaactgctatagtgagttagtattataaataaagatgcagaggaaaag 33215264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 174
Target Start/End: Original strand, 37473631 - 37473660
Alignment:
Q  145 agggagagaccaagctctcgaattcttgga 174  Q
    ||||||||||||||||||||||||||||||    
T  37473631 agggagagaccaagctctcgaattcttgga 37473660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 54994579 - 54994821
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||| | ||||||||||||||| |||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  54994579 ataagtaactgttacttatgtgtagtaattgctgtctactaaacttctatgtaactgctataggacttagtattataaataagatgcagaggaaaagaaa 54994678  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  54994679 ggtattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggattatat 54994778  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  54994779 tgtaatcttactattagtttatattttgatatcagttcctatc 54994821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 25 - 257
Target Start/End: Original strand, 7197692 - 7197928
Alignment:
Q  25 gttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtatt 120  Q
    ||||||| | || |||||||||||| ||| |||||||||||||||  ||| ||||     |||||||||||||||||||||||||||||||||||| |||    
T  7197692 gttacttatgtgcagtaattgctgtctacaaaacttctatgtaactgctacaggagagagttagtattataaataagatgcagaggaaaagaaaggcatt 7197791  T
Q  121 cagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaat 220  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  7197792 cagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaat 7197891  T
Q  221 cttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  7197892 cttactattagtttatattttgatatcagttcctatc 7197928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 79 - 257
Target Start/End: Complemental strand, 45826331 - 45826153
Alignment:
Q  79 aattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggagggg 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45826331 aattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggagggg 45826232  T
Q  179 agagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45826231 agagaaccaagactctctaatttcttgggattatattgtaatattactattagtttatattttgatatcagttcctatc 45826153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 2386543 - 2386293
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||| ||||| || |||||||||||| |||||||||| ||||||||   ||||||| ||||||||||||||||||||||||||||||||||    
T  2386543 ataagtaactgttgcttgtctgcagtaattgctgtctactaaacttttatgtaactgttataggacttagtattataaataagatgcagaggaaaagaaa 2386444  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||    
T  2386443 ggcattcagggattgagataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccgagactctcgaatttcttgggattatat 2386344  T
Q  215 tgta--------atcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||        || |||||||||||||||||||||||||||||| |||||    
T  2386343 tgtaatattagtatattactattagtttatattttgatatcagtttctatc 2386293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 81 - 255
Target Start/End: Original strand, 592537 - 592711
Alignment:
Q  81 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 180  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  592537 ttagtattataaataagatgcaaaggaaaagaaaggtattcagggattgggataaaggattggtagggagagcccaagctctcgaattcttggaggggag 592636  T
Q  181 agaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttccta 255  Q
    ||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  592637 agaaccaagaccctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttccta 592711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 48637715 - 48637539
Alignment:
Q  81 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 180  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  48637715 ttagtattataaataagatgcagaggaaaagagaggtattgagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggag 48637616  T
Q  181 agaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48637615 agaaccaagactctcaaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 48637539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 40976771 - 40977001
Alignment:
Q  38 agtaattgctgtttactaaacttctatgtaacaactatagga----attagtattataaataagatgcagaggaaaagaaaggtattcagggattgggat 133  Q
    |||| ||||||  ||||||||||| |||||||  ||||||||    |||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  40976771 agtagttgctggctactaaacttcaatgtaactgctataggagggaattagtcttataaataagatgcagaggaaaagaaaggcatgcagggattgggat 40976870  T
Q  134 aaaggataggtaggga-------gagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttact 226  Q
    ||||||  |||| |||       |||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||    
T  40976871 aaaggactggtatggactatggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaattttttgggattatattgtaatattact 40976970  T
Q  227 attagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||    
T  40976971 attagtttatattttgatatcagttcctatc 40977001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 39984954 - 39984838
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39984954 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 39984855  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  39984854 atcaaagggattttccc 39984838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 39983893 - 39983777
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  39983893 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccatttaggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 39983794  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  39983793 atcaaagggattttccc 39983777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 51274436 - 51274571
Alignment:
Q  95 aagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctct 194  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||    
T  51274436 aagatgcagaggaaaagaagggcattcagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggggagaaccaagactct 51274535  T
Q  195 agaatttcttgggattatattgtaatcttactatta 230  Q
     ||||||||||||||||||||||||| |||||||||    
T  51274536 cgaatttcttgggattatattgtaatattactatta 51274571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 41968336 - 41968222
Alignment:
Q  260 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgtaa 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  41968336 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatatt-atctgtaa 41968238  T
Q  360 tcaaagggattttccc 375  Q
    ||||||||||||||||    
T  41968237 tcaaagggattttccc 41968222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 14414236 - 14414302
Alignment:
Q  299 aggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgtaatcaaag 365  Q
    |||||||||||||| | |||||| ||||||||||| |||||||||| ||||  |||||||| |||||    
T  14414236 aggggccattttgggattagggacgtgcagaccctagaagttctgccatatcattctgtaaacaaag 14414302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 25184672 - 25184729
Alignment:
Q  56 aacttctatgtaacaactataggaa-ttagtattataaataa-gatgcagaggaaaag 111  Q
    ||||||||||||||  ||||||| | |||||||||||||||| |||||||||||||||    
T  25184672 aacttctatgtaactgctatagggagttagtattataaataaagatgcagaggaaaag 25184729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 16772848 - 16772790
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttg 205  Q
    ||||| |||||||||||||||||||||||| | ||||| |||||| |||| ||||||||||    
T  16772848 agggaaagaccaagctctcgaattcttgga-gagagag-accaagactctcgaatttcttg 16772790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 49987286 - 49987228
Alignment:
Q  146 gggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgg 206  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||| |||| |||||||||||    
T  49987286 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 49987228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 54886927 - 54886899
Alignment:
Q  147 ggagagaccaagctctcgaattcttggag 175  Q
    |||||||||||||||||||||||||||||    
T  54886927 ggagagaccaagctctcgaattcttggag 54886899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 8089962 - 8089720
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  8089962 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaa 8089863  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||    
T  8089862 ggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatat 8089763  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8089762 tgtaatcttactattagtttatattttgatatcagttcctatc 8089720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 10582670 - 10582912
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  10582670 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaa 10582769  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||    
T  10582770 ggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtat 10582869  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10582870 tgtaatcttactattagtttatattttgatatcagttcctatc 10582912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 10583876 - 10584118
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||    
T  10583876 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctatgggacttagtattataaataagatgcagaagaaaagaaa 10583975  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||    
T  10583976 ggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtat 10584075  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  10584076 tgtaatcttactattagtttatattttgatatcagttcctatc 10584118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 40 - 257
Target Start/End: Original strand, 49122123 - 49122340
Alignment:
Q  40 taattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaagga 139  Q
    |||||| ||| | |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49122123 taattgttgtctgctaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaagga 49122222  T
Q  140 taggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatatt 239  Q
    | |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  49122223 ttggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtttatatt 49122322  T
Q  240 ttgatatcagttcctatc 257  Q
    || |||||||||||||||    
T  49122323 ttcatatcagttcctatc 49122340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 49123232 - 49123474
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  49123232 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaa 49123331  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    ||||||||||||||||| |||||||| ||||||||||||    || ||||||| ||||||||||||||||||||| |||| |||||||||||||||||||    
T  49123332 ggtattcagggattggggtaaaggattggtagggagagattgggcactcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatat 49123431  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    | |||||||||||||||||||||||||||||||||||||||||    
T  49123432 tctaatcttactattagtttatattttgatatcagttcctatc 49123474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 49121909 - 49122124
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| || |||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  49121909 ataagtaactgttacttgtgtgaagtaattgttgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaa 49122008  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||  ||||||||||||||||||    
T  49122009 ggtattcagggattgggataaaggattggtagggagagatcaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgggattatat 49122108  T
Q  215 tgtaatcttactatta 230  Q
    ||||||||||||||||    
T  49122109 tgtaatcttactatta 49122124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 8788710 - 8788534
Alignment:
Q  81 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8788710 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctttcgaattcttggaggggag 8788611  T
Q  181 agaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||||| ||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8788610 agaaccaagactctctaatttcttgggattatattgtaatattactattagtttatattttgatatcagttcctatc 8788534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 8090191 - 8090075
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8090191 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 8090092  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  8090091 atcaaagggattttccc 8090075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 173009 - 172894
Alignment:
Q  260 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgtaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  173009 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgtaa 172910  T
Q  360 tcaaagggattttccc 375  Q
    ||||||||||||||||    
T  172909 tcaaagggattttccc 172894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 27962767 - 27962651
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||    
T  27962767 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcattagggaggtgcagacccttgaagttctgcaatattattctgta 27962668  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  27962667 atcaaagggattttccc 27962651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 48907451 - 48907335
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  48907451 ggatgggaagattgaggggcatctaaggatttgactgggaaggggccattttggtaatagggaggtgcagaccctcgaagttctgcaatattattctgta 48907352  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  48907351 atcaaagggattttccc 48907335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 56 - 229
Target Start/End: Complemental strand, 23541176 - 23540999
Alignment:
Q  56 aacttctatgtaacaactataggaa-ttagtattataaataa-gatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagaga 153  Q
    ||||||||||||||  ||||||| | |||||||||| ||||| |||||| |||||||||| |  |||||||||||||||||| |||| ||||||||||||    
T  23541176 aacttctatgtaactgctatagggagttagtattatgaataaagatgcaaaggaaaagaaggacattcagggattgggataatggattggtagggagaga 23541077  T
Q  154 ccaagctctcg--aattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactatt 229  Q
    ||||||||| |  ||| |||||| || ||| ||||||| |||| |||||||||||||||||| |||||||||||||||    
T  23541076 ccaagctcttgaaaatacttggaaggaagaaaaccaagactcttgaatttcttgggattatactgtaatcttactatt 23540999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 23540998 - 23540880
Alignment:
Q  142 ggtagggagagaccaagctctcgaa--ttcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagttt--ata 237  Q
    ||||||||||||||||||||| |||  | |||||| || ||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||||  |||    
T  23540998 ggtagggagagaccaagctcttgaaaatacttggaaggaagaaaaccaagactcttgaatttcttgggattatactgtaatcttactattagtttatata 23540899  T
Q  238 ttttgatatcagttcctat 256  Q
    |||||||||||||||||||    
T  23540898 ttttgatatcagttcctat 23540880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 3815222 - 3815335
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttggg-attatattgtaatcttactattagtttatattttga 243  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||| | | ||||||| | ||| ||||| ||| ||||||||    
T  3815222 agggagagaccaagcactcgaattcttggaggggagagaaccaagactctcgaatttcatgggaaatctattgtattattaatattaatttgtattttga 3815321  T
Q  244 tatcagttcctatc 257  Q
    |||||||| |||||    
T  3815322 tatcagtttctatc 3815335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 19950442 - 19950378
Alignment:
Q  153 accaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||| | ||||||    
T  19950442 accaagctctcgaattcttggaggggagagaaccaaggctctcaaatttcttgggaatttattgt 19950378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 36346653 - 36346541
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgat 244  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||| |||| ||||||||||||    || |||| | ||| ||||| ||| ||||||| |    
T  36346653 agggagagatcaagctctcgaattcatggaggggagagaaccaagactctcgaatttcttggggaactactgtattattaatattaatttgtattttggt 36346554  T
Q  245 atcagttcctatc 257  Q
    ||||||| |||||    
T  36346553 atcagtttctatc 36346541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 195
Target Start/End: Complemental strand, 17826271 - 17826222
Alignment:
Q  146 gggagagaccaagctctcgaattcttggaggggagagaaccaaggctcta 195  Q
    ||||||||||||||||||||||||||||||||  |||| ||||| |||||    
T  17826271 gggagagaccaagctctcgaattcttggagggaggagacccaagactcta 17826222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 30038170 - 30038108
Alignment:
Q  146 gggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttggga 208  Q
    |||||||||||| |||| ||||||||||| |||||||| | | | |||| |||||||||||||    
T  30038170 gggagagaccaaactcttgaattcttggaagggagagaccgacgactcttgaatttcttggga 30038108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 40670646 - 40670604
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaacca 187  Q
    |||||||| |||||||||| |||||||||| ||||||||||||    
T  40670646 agggagaggccaagctctcaaattcttggacgggagagaacca 40670604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 6081171 - 6081413
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  6081171 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaa 6081270  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||    
T  6081271 ggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtat 6081370  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6081371 tgtaatcttactattagtttatattttgatatcagttcctatc 6081413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 6082378 - 6082620
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||    
T  6082378 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttattattataaataagatgcagaagaaaagaaa 6082477  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||    
T  6082478 ggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtat 6082577  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6082578 tgtaatcttactattagtttatattttgatatcagttcctatc 6082620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 13077530 - 13077646
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13077530 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 13077629  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  13077630 atcaaagggattttccc 13077646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 13078591 - 13078707
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  13078591 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattccgta 13078690  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  13078691 atcaaagggattttccc 13078707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 17901159 - 17901273
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttata--ttttg 242  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||| | ||||||||| ||||||||| ||||||  |||||    
T  17901159 agggagagaccaagctctcgaattcttggaggggagagtaccaagactctcgaatttcttgggaatctattgtaatattactattaatttatatgttttg 17901258  T
Q  243 atatcagttcctatc 257  Q
    ||||||||| |||||    
T  17901259 atatcagtttctatc 17901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 27021363 - 27021468
Alignment:
Q  144 tagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttga 243  Q
    |||||||||| |||||||||||||||||| || |||| |||||| | |||  ||||||||||||||| ||||||||| |||||||||  | |||||||||    
T  27021363 tagggagagatcaagctctcgaattcttgaagaggagggaaccaggactc--gaatttcttgggattctattgtaatattactattaagtaatattttga 27021460  T
Q  244 tatcagtt 251  Q
    ||||||||    
T  27021461 tatcagtt 27021468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 30640722 - 30640782
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgg 206  Q
    |||||||||||||||||| ||||||||||| || |||| |||||||||||  ||||||||||    
T  30640722 agggagagaccaagctcttgaattcttggaaggcagag-accaaggctctcaaatttcttgg 30640782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 205832 - 205590
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||    
T  205832 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaagaaaagaaa 205733  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||    
T  205732 gatattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattgtat 205633  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  205632 tgtaatcttactattagtttatattttgatatcagttcctatc 205590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 81 - 257
Target Start/End: Complemental strand, 211843 - 211667
Alignment:
Q  81 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 180  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  211843 ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggag 211744  T
Q  181 agaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  211743 agaaccaagactctcgaatttcttgggattgtattgtaatcttactattagtttatattttgatatcagttcctatc 211667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 11962000 - 11962242
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  11962000 ataagtaactgttacttgtgtgtagtaattgctgtctactaaatttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaa 11962099  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    |||||||||| |||||| |||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||    
T  11962100 ggtattcaggcattggggtaaaggattggtagggatagaccaagctctcgaacacttggaggggagagaaccaagactctcgaatttcttgggattatat 11962199  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  11962200 tgtaatctaactattagtttatattttgatatcagttcctatc 11962242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 260 - 375
Target Start/End: Complemental strand, 54938978 - 54938863
Alignment:
Q  260 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgtaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  54938978 gatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattcagtaa 54938879  T
Q  360 tcaaagggattttccc 375  Q
    ||||||||||||||||    
T  54938878 tcaaagggattttccc 54938863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 87 - 257
Target Start/End: Original strand, 3567008 - 3567178
Alignment:
Q  87 ttataaataa-gatgcagaggaaaagaaaggt-attcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaa 184  Q
    |||||||||| ||||||||||||||||| ||  ||||  ||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  3567008 ttataaataaagatgcagaggaaaagaaggggcattc--ggattggaataaaggataggtagggagagaccaaactatcgaattcttggaggggagagaa 3567105  T
Q  185 ccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||| |  | |||||||||| |||| ||||||||| |||||||||| |||||||||||| |||||| |||||    
T  3567106 ccaagacaattgaatttcttgagattgtattgtaatattactattaggttatattttgatctcagtttctatc 3567178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 88 - 173
Target Start/End: Complemental strand, 45638831 - 45638746
Alignment:
Q  88 tataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttgg 173  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  45638831 tataaataagatgcagaggaaaagaaaggcattcagggattgggataaagggtaggtagggagagaccaagctctcgaattcttgg 45638746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 289 - 375
Target Start/End: Complemental strand, 54937908 - 54937822
Alignment:
Q  289 ttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgtaatcaaagggattttccc 375  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  54937908 ttgactgggaaggggccattttagcaatagggaggtgcagaccctcgaagttctgcaatattattcagtaatcaaagggattttccc 54937822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 27869371 - 27869434
Alignment:
Q  142 ggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttg 205  Q
    ||||||||||||||||||||| ||||||||||| ||||||||  |||| |||| ||||||||||    
T  27869371 ggtagggagagaccaagctcttgaattcttggaagggagagatgcaagactctcgaatttcttg 27869434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 242
Target Start/End: Complemental strand, 45638752 - 45638710
Alignment:
Q  200 ttcttgggattatattgtaatcttactattagtttatattttg 242  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  45638752 ttcttgggattatattgtaatattactattagtttatactttg 45638710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 32992387 - 32992448
Alignment:
Q  146 gggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttggga 208  Q
    ||||||||| |||||||||| |||||||| |||||||| ||||| |||| ||||| |||||||    
T  32992387 gggagagacaaagctctcgagttcttgga-gggagagacccaagactctcgaattccttggga 32992448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 36982362 - 36982313
Alignment:
Q  158 gctctcgaattcttggaggggagagaaccaaggctctagaatttcttggga 208  Q
    ||||||||||||||||| |||||||| ||||| |||||||||| |||||||    
T  36982362 gctctcgaattcttgga-gggagagatccaagactctagaattccttggga 36982313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 25542543 - 25542486
Alignment:
Q  56 aacttctatgtaacaactatag-gaattagtattataaataa-gatgcagaggaaaag 111  Q
    ||||||||||||||  |||||| || |||||||||||||||| |||||||||||||||    
T  25542543 aacttctatgtaactgctatagtgagttagtattataaataaagatgcagaggaaaag 25542486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 33789849 - 33790094
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  33789849 ataagtaactgttacttgtgtgtagtaattgctgtctactaaacttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaa 33789948  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggat--tat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||  |||    
T  33789949 ggtattcagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggagagaaccaagactctcgaatttcttgggattatat 33790048  T
Q  213 attgtaat-cttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||||  ||||||| | |||||||||||||||||||| |||||    
T  33790049 attgtaataattactataaatttatattttgatatcagtttctatc 33790094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 14684556 - 14684672
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14684556 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 14684655  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  14684656 atcaaagggattttccc 14684672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 14685617 - 14685733
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  14685617 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 14685716  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  14685717 atcaaagggattttccc 14685733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 21306412 - 21306528
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21306412 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 21306511  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  21306512 atcaaagggattttccc 21306528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 30246458 - 30246574
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  30246458 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 30246557  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  30246558 atcaaagggattttccc 30246574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 51 - 257
Target Start/End: Original strand, 12324855 - 12325068
Alignment:
Q  51 tactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtag 146  Q
    |||||||||| | |||||| |||||||||     |||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||||    
T  12324855 tactaaacttatgtgtaactactataggagagagttagtattataaataagatgcaaaggaaaagaaagctattcagggattgcgataaaggattggtag 12324954  T
Q  147 ggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggat--tatattgtaat-cttactattagtttatattttga 243  Q
    ||||||||||| |||||||||| |||||||||||||||||||| |||| ||||| ||||||||  |||||||||||  ||||||| | ||||||||||||    
T  12324955 ggagagaccaaactctcgaatttttggaggggagagaaccaagactctcgaattccttgggattatatattgtaataattactataaatttatattttga 12325054  T
Q  244 tatcagttcctatc 257  Q
    |||||||| |||||    
T  12325055 tatcagtttctatc 12325068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 4517393 - 4517277
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  4517393 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgatgttctgcaatattattctgta 4517294  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  4517293 atcaaagggattttccc 4517277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 21307469 - 21307585
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21307469 ggatgggaagattgaggggcatctgaggatttgactgggaaggggcctttttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 21307568  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  21307569 atcaaagggattttccc 21307585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 40421380 - 40421496
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  40421380 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattactctgta 40421479  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  40421480 atcaaagggattttccc 40421496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 259 - 375
Target Start/End: Original strand, 40422439 - 40422555
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  40422439 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagacccttgaagttctgcaatattattctgta 40422538  T
Q  359 atcaaagggattttccc 375  Q
    |||||||||||||||||    
T  40422539 atcaaagggattttccc 40422555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 18955376 - 18955505
Alignment:
Q  56 aacttctatgtaacaactataggaa-ttagtattataaataa-gatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagaga 153  Q
    ||||| ||||||||  ||||||| | ||||| |||||||||| |||||||||||||||||  | |||| |  ||| ||||||||||| ||||||||||||    
T  18955376 aacttttatgtaactgctatagggagttagtgttataaataaagatgcagaggaaaagaagagaattcggttatttggataaaggattggtagggagaga 18955475  T
Q  154 ccaagctctcgaattcttggaggggagaga 183  Q
    |||| ||||| |||||||||| ||||||||    
T  18955476 ccaatctctctaattcttggaagggagaga 18955505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 13218802 - 13218743
Alignment:
Q  146 gggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgg 206  Q
    ||||||||||||||||||||||||||| | |||||||| ||||  |||| |||||||||||    
T  13218802 gggagagaccaagctctcgaattcttgcaagggagagacccaa-actcttgaatttcttgg 13218743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 3302449 - 3302494
Alignment:
Q  130 ggataaaggataggtagggagagaccaa-gctctcgaattcttgga 174  Q
    ||||||||||| |||||||||||||||| ||||| |||||||||||    
T  3302449 ggataaaggattggtagggagagaccaaggctcttgaattcttgga 3302494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 42599753 - 42599698
Alignment:
Q  150 gagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgg 206  Q
    ||||||||||| || |||||||||| |||||| ||||||| |||| |||||||||||    
T  42599753 gagaccaagctttcaaattcttggaagggaga-aaccaagactcttgaatttcttgg 42599698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 12195 - 12436
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||| ||| |||||| ||||||||||||| |||||||| || |||||||||||||||||||||||||||||||    
T  12195 ataagtaactgttacttgtgtgtagtaattgttgtctactaa-cttctatgtaacagctataggacttggtattataaataagatgcagaggaaaagaaa 12293  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||  ||||||||||||||||||    
T  12294 gttattcagggattgggataaaggataggtagggagagaccaagctcttgaactcttggaggggagagaaccaagactctctaatttcttgggattatat 12393  T
Q  215 tgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  12394 tgtaatattactattagtttatattttgatataagttcctatc 12436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 38 - 257
Target Start/End: Original strand, 11065 - 11288
Alignment:
Q  38 agtaattgctgtttactaaacttctatgtaacaactataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggat 133  Q
    |||||||||||| |||||||||||||||||||  ||||||||     |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  11065 agtaattgctgtctactaaacttctatgtaactgctataggagagagttagtattataaataagatgcagaagaaaagaaagatattcagggattgggat 11164  T
Q  134 aaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtt 233  Q
    ||||||| |||||||||||||||||||||||||  |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  11165 aaaggattggtagggagagaccaagctctcgaaaacttggaagggagagaaccaagactctcgaatttcttgggattatattgtaatcttactattagtt 11264  T
Q  234 tatattttgatatcagttcctatc 257  Q
    ||||||||||||||||||||||||    
T  11265 tatattttgatatcagttcctatc 11288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 178106 - 177889
Alignment:
Q  15 ataagtaaccgttacttgtatgtagtaattgctgtttactaaacttctatgtaacaactataggaattagtattataaataagatgcagaggaaaagaaa 114  Q
    ||||||||| ||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  178106 ataagtaactgttacttgtgtgtagtaattgctgtctactaaatttctatgtaacagctataggacttagtattataaataagatgcagaggaaaagaaa 178007  T
Q  115 ggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatat 214  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||    
T  178006 ggtattcagggattggggtaaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatat 177907  T
Q  215 tgtaatcttactattagt 232  Q
    ||||||||||| ||||||    
T  177906 tgtaatcttaccattagt 177889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 81 - 257
Target Start/End: Original strand, 80753 - 80929
Alignment:
Q  81 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 180  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80753 ttagtattataaataagatgcagagaaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 80852  T
Q  181 agaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  80853 agaaccaagactctcgaatttattgggattatattgtaatattactattagtttatattttgatatcagttcctatc 80929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 79557 - 79728
Alignment:
Q  81 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 180  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  79557 ttagtattataaataagatgcagaggaaaataaaggtattcatggattaggataaaggataggtacggagagaccaagctctcgaattcttggaggggag 79656  T
Q  181 agaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttc 252  Q
    ||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  79657 agaaccaagactctcgaatttcttgggattatattgtaatattactattagtttatattttgatatcagttc 79728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 257
Target Start/End: Original strand, 40254410 - 40254615
Alignment:
Q  51 tactaaacttctatgtaacaactataggaa-ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtaggga 149  Q
    |||||||||||||||||||  ||||||| | ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  40254410 tactaaacttctatgtaactgctatagggagttcatattataaataagatgcagaggaaaagaaagg-attcagggattgggataaaggattggtaggga 40254508  T
Q  150 gagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcag 249  Q
    |||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||||||||| |||||||||||||||| |    
T  40254509 gagaccaagctctc-aattcttggaggggagagaaccaagactctcgaatttcttgggattctattgtaatattactattaatttatattttgatatctg 40254607  T
Q  250 ttcctatc 257  Q
    || |||||    
T  40254608 tttctatc 40254615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 45036313 - 45036197
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45036313 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattattctgta 45036214  T
Q  359 atcaaagggattttccc 375  Q
    |||||||| ||||||||    
T  45036213 atcaaaggaattttccc 45036197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 259 - 371
Target Start/End: Original strand, 13255565 - 13255677
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagaccctcgaagttctgcaatattcttctgta 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  13255565 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttggcaatagggaggtgcagacccttgaagttctgcaatattattctgta 13255664  T
Q  359 atcaaagggattt 371  Q
    |||||||| ||||    
T  13255665 atcaaaggaattt 13255677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 21661182 - 21661290
Alignment:
Q  146 gggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgata 245  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21661182 gggagagaccaagctctcgaattattggaggggagagaaccaagactctcgaatttcttgggaatatattgtaatcttactattagtttatattttgata 21661281  T
Q  246 tcagttcct 254  Q
    |||||||||    
T  21661282 tcagttcct 21661290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 259 - 375
Target Start/End: Complemental strand, 6540728 - 6540610
Alignment:
Q  259 ggatgggaagattgaggggcatctgaggatttgactgggaaggggccattttg--gcaatagggaggtgcagaccctcgaagttctgcaatattcttctg 356  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||||||||||||||||| |||||||||||||||| |||||    
T  6540728 ggatgggaagattgaggggcatctgaggacttgactgggaaggggccattttgtggcattagggaggtgcagacccttgaagttctgcaatattattctg 6540629  T
Q  357 taatcaaagggattttccc 375  Q
    |||||||||||||||||||    
T  6540628 taatcaaagggattttccc 6540610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 257
Target Start/End: Complemental strand, 2411264 - 2411062
Alignment:
Q  55 aaacttctatgtaacaactataggaa-ttagtattataaataa-gatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagag 152  Q
    |||||| ||||||||  ||||||| | ||||||||||||| || | |||||||||||| |  || |||| |  ||| ||||||||||| |||||||||||    
T  2411264 aaacttttatgtaacttctatagggagttagtattataaacaaagttgcagaggaaaataggggcattcggttatttggataaaggattggtagggagag 2411165  T
Q  153 accaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttc 252  Q
    |||||||||  |||||| |||||||||||||| |||| ||||  ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||     
T  2411164 accaagctc--gaattcctggaggggagagaatcaagactctcaaatttcttgggattcgattgtaatattactattagtttatattttgatatcagttt 2411067  T
Q  253 ctatc 257  Q
    |||||    
T  2411066 ctatc 2411062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 26247043 - 26246969
Alignment:
Q  183 aaccaaggctctagaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 257  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26247043 aaccaagactctcgaatttcttgggattatattgtaatcttactattagtttatattttgatatcagttcctatc 26246969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Complemental strand, 5176658 - 5176597
Alignment:
Q  146 gggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttggga 208  Q
    ||||||||||||||||||||||||||||| |||||||| ||||| |||| ||||| |||||||    
T  5176658 gggagagaccaagctctcgaattcttgga-gggagagacccaagactctcgaattccttggga 5176597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 26187541 - 26187599
Alignment:
Q  150 gagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttggga 208  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||  ||||||||||||    
T  26187541 gagaccaagctctcaaattcttggaagggagagacccaaggctctcaaatttcttggga 26187599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 13260936 - 13261037
Alignment:
Q  130 ggataaaggataggtagggagagaccaagctctcgaattcttggag-gggagagaaccaaggctctagaatttcttgggattatattgtaatcttactat 228  Q
    ||||||||||| ||| ||||||||  ||||||||  ||||||| |  |||||||| ||||| |||| ||||||||||||| | ||||||||  |||||||    
T  13260936 ggataaaggattggtcgggagagaataagctctctgattcttgaaaagggagagatccaagactctcgaatttcttgggaatttattgtaacattactat 13261035  T
Q  229 ta 230  Q
    ||    
T  13261036 ta 13261037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 36241325 - 36241268
Alignment:
Q  56 aacttctatgtaacaactatag-gaattagtattataaataa-gatgcagaggaaaag 111  Q
    ||||||||||||||  |||||| || |||||||||||||||| |||||||||||||||    
T  36241325 aacttctatgtaactgctatagtgagttagtattataaataaagatgcagaggaaaag 36241268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 19729212 - 19729244
Alignment:
Q  147 ggagagaccaagctctcgaattcttggagggga 179  Q
    |||||||||||||||||||||||||||| ||||    
T  19729212 ggagagaccaagctctcgaattcttggaaggga 19729244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 43506470 - 43506411
Alignment:
Q  145 agggagagaccaagctctcgaattcttggaggggagagaaccaaggctctagaatttcttg 205  Q
    ||||||||||||||||||| |||||||  | ||||||| |||||| |||| ||||||||||    
T  43506470 agggagagaccaagctctctaattcttcaaagggagag-accaagactctcgaatttcttg 43506411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 177
Target Start/End: Original strand, 33903 - 33934
Alignment:
Q  146 gggagagaccaagctctcgaattcttggaggg 177  Q
    ||||||||||||||||||||||||||||||||    
T  33903 gggagagaccaagctctcgaattcttggaggg 33934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University