View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2166_low_2 (Length: 410)
Name: NF2166_low_2
Description: NF2166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2166_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 42738786 - 42738410
Alignment:
| Q |
11 |
atgaatgttaacaatgaaactggaaaaaagaagaatgaaaaggaagagaagggtatataccgtattgtttcctccagtgttgaaaatatgggaacagagc |
110 |
Q |
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| T |
42738786 |
atgaatgttaacaatgaaactggaaaaaagaagaatgaaaaggaagagaagggtatataccgtattgtttcctccagtgttgaaaatatgggaacagagc |
42738687 |
T |
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| Q |
111 |
tgcagagtaatcataagctagaaactgatcattatctttggaaatattgctagcttgcgatgtaattctctgcatatcaggtagattcccatgtagaaaa |
210 |
Q |
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| T |
42738686 |
tgcagagtaatcataagctagaaactgatcattatctttggaaatattgctagcttgcgatgtaattctctgcatatcaggtagattcccatgtagaaaa |
42738587 |
T |
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| Q |
211 |
gaagaaggtggaggccctctaataccttgcattctgagctttcttcttaccctttgggacttataccacaaagtgccataaatacaaaaaatccagctca |
310 |
Q |
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| T |
42738586 |
gaagaaggtggaggccctctaataccttgcattctgagctttcttcttaccctttgggaattataccacaaagtgccataaatataaaaaatccagctca |
42738487 |
T |
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| Q |
311 |
aaatacccacaagagcaagtgaaaatgctagtttcataccaaaaattatcacctcctccatttcttcctaattttca |
387 |
Q |
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| T |
42738486 |
aaatacccacaagagcaagtgaaaatgctagtttcataccaaaaattatcacctcctccatttcttcctaattttca |
42738410 |
T |
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