View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2166_low_4 (Length: 250)
Name: NF2166_low_4
Description: NF2166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2166_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 45039764 - 45039537
Alignment:
| Q |
17 |
aattacttgccttggcaataatggtgatgtcaagagtatttccaaatggcaagacattgatacttgttatggagagatgaagaagttgaagctgggacat |
116 |
Q |
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| T |
45039764 |
aattacttgccttggcaataatggtgatgtcaagagtatttccaaatggcaagacattgatacttgttatggacagatgaagaagttgaagctgggacat |
45039665 |
T |
|
| Q |
117 |
tatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattcatttctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039664 |
tatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattcatttctc |
45039565 |
T |
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| Q |
217 |
ccgtaacattcttcagtgttcatctcac |
244 |
Q |
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| T |
45039564 |
ccgtaacattcttcagtgttcatttcac |
45039537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 45082826 - 45083053
Alignment:
| Q |
17 |
aattacttgccttggcaataatggtgatgtcaagagtatttccaaatggcaagacattgatacttgttatggagagatgaagaagttgaagctgggacat |
116 |
Q |
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|||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| | || |
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| T |
45082826 |
aattacttgcctgggcaataatagtgatgttaagagtatttccaaatggcaagacattggtagttgttatggagagatgaagaatttgaagctgcaaaat |
45082925 |
T |
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| Q |
117 |
tatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattcatttctc |
216 |
Q |
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| T |
45082926 |
tatattgaccagaatctccttttacttcccacagcgaatcttgattaacacttccttccctagaaccctcacttcaagctctggaaatgtttcattgtgc |
45083025 |
T |
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| Q |
217 |
ccgtaacattcttcagtgttcatctcac |
244 |
Q |
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| T |
45083026 |
cgataacattctttagtgttcatttcac |
45083053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 244
Target Start/End: Complemental strand, 45065543 - 45065449
Alignment:
| Q |
150 |
ataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattcatttctcccgtaacattcttcagtgttcatctcac |
244 |
Q |
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||||||||| ||| | ||||||||| | |||| ||||| ||||||| ||||||||||| ||||| || |||||||||||||||||||| |||| |
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| T |
45065543 |
ataaatcttaattgacacttccttcccaagaactctagcatcaacctttagaagtgatttatttcggccataacattcttcagtgttcatttcac |
45065449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 29377517 - 29377295
Alignment:
| Q |
17 |
aattacttgccttggcaataatggtgatgtcaagagtatttccaaatggcaagacattgatacttgttatggagagatgaagaagttgaagctgggacat |
116 |
Q |
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|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||||||||||| |
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| T |
29377517 |
aattacttgcctgagcaataatggcgatgtcaagagtatttccaaatggcaagacattggtagttgttacggagagatgaagaagctgaagctgggacat |
29377418 |
T |
|
| Q |
117 |
tatattgaccacaatcccttcttgcattccacaataaatcttgattaaaacttccttctctagaatcctagcttcaacctctagaagtgattcatttctc |
216 |
Q |
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|||||||||||||||||| |||||||| ||||||| |||||||||||| ||||| ||| |||||| ||||||||||||||||| |||||||||||||| | |
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| T |
29377417 |
tatattgaccacaatcccctcttgcatgccacaatgaatcttgattaacacttcattccctagaaccctagcttcaacctctacaagtgattcatttcgc |
29377318 |
T |
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| Q |
217 |
ccgtaacattcttcagtgttcat |
239 |
Q |
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||||||||||||||||| ||||| |
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| T |
29377317 |
ccgtaacattcttcagttttcat |
29377295 |
T |
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