View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21670_high_1 (Length: 406)

Name: NF21670_high_1
Description: NF21670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21670_high_1
NF21670_high_1
[»] chr4 (11 HSPs)
chr4 (1-396)||(7615597-7615992)
chr4 (1-395)||(7606584-7606996)
chr4 (1-216)||(7637612-7637827)
chr4 (1-216)||(7629166-7629381)
chr4 (232-396)||(7637414-7637578)
chr4 (240-396)||(7628968-7629124)
chr4 (1-215)||(7655499-7655710)
chr4 (235-389)||(7655748-7655902)
chr4 (13-122)||(39098306-39098415)
chr4 (348-387)||(39098047-39098086)
chr4 (334-390)||(7633703-7633759)
[»] chr7 (5 HSPs)
chr7 (1-396)||(8935460-8935873)
chr7 (1-381)||(8910525-8910919)
chr7 (1-157)||(8934519-8934675)
chr7 (1-148)||(8930064-8930211)
chr7 (292-390)||(8918826-8918924)
[»] chr8 (1 HSPs)
chr8 (97-215)||(15190642-15190757)
[»] chr6 (2 HSPs)
chr6 (92-214)||(6501058-6501176)
chr6 (94-122)||(11969547-11969575)
[»] chr3 (2 HSPs)
chr3 (76-215)||(40146823-40146959)
chr3 (98-212)||(8103025-8103139)


Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 7615992 - 7615597
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615992 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 7615893  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615892 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 7615793  T
Q  201 catacgatttcctttcgtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7615792 catacgatttcctttcgtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagag 7615693  T
Q  301 aaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7615692 aaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagtgcttttaactcacctttggtgctctgtg 7615597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 7606996 - 7606584
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  7606996 aaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacggaaagtccgtgtggcatt 7606897  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    ||||||||||||||||||||||||||||  ||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||| ||||||  ||    
T  7606896 tcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttccaaatggtattcaacttcc 7606797  T
Q  201 catacgatttcctttc------------------gtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggata 282  Q
    ||||||||||||||||                    | || ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  7606796 catacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaactttgtttatcaaataggtta 7606697  T
Q  283 tttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacc 382  Q
    |||||||||||||| ||||||||  ||||||| ||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  7606696 tttcatttcacaaaggagaaaatcatacaactgaaatcgaaaatcaatgaagaggttggtaccatcaaaataacttctctacaagcgcttttaactcacc 7606597  T
Q  383 tttggtgctctgt 395  Q
    |||||||||||||    
T  7606596 tttggtgctctgt 7606584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7637827 - 7637612
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  7637827 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 7637728  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7637727 tcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacggcc 7637628  T
Q  201 catacgatttcctttc 216  Q
     |||||||||||||||    
T  7637627 tatacgatttcctttc 7637612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 7629381 - 7629166
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||| ||||||||||||||||||||||||||| | |||||||||||| | |||||||||||||| ||||||||| |||| ||||||||||    
T  7629381 aaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacggaaagtccgtgtggcatt 7629282  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||   || |||||||||||||||||| ||||||  ||    
T  7629281 tcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaaatggtattcaacttcc 7629182  T
Q  201 catacgatttcctttc 216  Q
    ||||||||||||||||    
T  7629181 catacgatttcctttc 7629166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 232 - 396
Target Start/End: Complemental strand, 7637578 - 7637414
Alignment:
Q  232 ttgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatg 331  Q
    ||||||||||| |||| |||||||||||||  |||||||||||||||| |||||||||||||||| ||||||||  ||||| | |||||||||||||| |    
T  7637578 ttgagtttttcatcgtttaatgaggaaaaatattgtttatcaaataggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacg 7637479  T
Q  332 atgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 396  Q
    | ||||| || |||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  7637478 aagagatcggcaccaccaaaatatcttctctacaagcacttttaactcacgtttggtgctatgtg 7637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 240 - 396
Target Start/End: Complemental strand, 7629124 - 7628968
Alignment:
Q  240 ttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagatt 339  Q
    |||||| |||||||| |||||||||||||||||||||||  |||| || || ||||| |||||||| || ||||| ||||| ||||||||  | ||||||    
T  7629124 ttcgtcatctaatgatgaaaaactttgtttatcaaatagattattccactttacaaaggagaaaatcgtgcaactgaaatcaaaaatcaacaaagagatt 7629025  T
Q  340 ggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgctctgtg 396  Q
    |||| |||||||||||||||||||||||||||| |||||||  ||||||||| ||||    
T  7629024 ggtaacatcaaaatatcttctctacaagcgcttctaactcatgtttggtgctatgtg 7628968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 7655499 - 7655710
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||| |||||||| ||||||||||||||||| || || ||||| |     ||||||||||| || | ||||||| ||||   ||||||||    
T  7655499 aaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacggacagtccacgtggcatt 7655598  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||| ||||||||||| |||||| ||||   ||||||||||||||||||  ||||||| || ||||||||||||||||||||  ||||||  ||    
T  7655599 tcatcaattcgtgggctgaaatgtcacgtggttg---tcatcatcaaatatctaactccccaacgctggagcgttggtttccaaatggaattcaacgacc 7655695  T
Q  201 catacgatttccttt 215  Q
     ||||||||||||||    
T  7655696 tatacgatttccttt 7655710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 389
Target Start/End: Original strand, 7655748 - 7655902
Alignment:
Q  235 agtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggatatttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatg 334  Q
    ||||||||||| ||| |||| |||||||| | | ||||| | ||||||||||| || |||||  |||||||  | ||||| ||||||||| ||||||  |    
T  7655748 agtttttcgtcttctgatgacgaaaaactctttctatcagagaggatatttcactttacaaagaagaaaatcatgcaactgaaatcgaaagtcaatgcag 7655847  T
Q  335 agattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtg 389  Q
    |||||| |||||  |||||||||||||||||||||||||||||||| ||||||||    
T  7655848 agattgataccaaaaaaatatcttctctacaagcgcttttaactcatctttggtg 7655902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 39098415 - 39098306
Alignment:
Q  13 gcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatttcatcaattcat 112  Q
    ||||||||||| || ||||| ||||| |||||||| ||||| | |||  |||| |||||||| || || ||  ||||  | |||||||||||||||||||    
T  39098415 gcagttcaagttactgagcttgttgatggtattttcattggcttctcaatcaatcatgttgttgtcgatggtaagtcgttttggcatttcatcaattcat 39098316  T
Q  113 gggctgaaat 122  Q
    || |||||||    
T  39098315 ggtctgaaat 39098306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 387
Target Start/End: Complemental strand, 39098086 - 39098047
Alignment:
Q  348 caaaatatcttctctacaagcgcttttaactcacctttgg 387  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  39098086 caaaatatcttctttacaagcacttttaactcacctttgg 39098047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 7633759 - 7633703
Alignment:
Q  334 gagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 390  Q
    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  7633759 gagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 7633703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 8935460 - 8935873
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||||||||||||||| ||| || ||||||||||||| ||||||||||| || ||||| | |||| |||||||| |||||||||||||||    
T  8935460 aaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatt 8935559  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||  |||||||||||| |||    
T  8935560 tcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccggatggtgttcaacggcc 8935659  T
Q  201 catacgatttcctttcgttt------------------acggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggata 282  Q
     |||||||||||||||  ||                  ||  |||||  |||||||||| |||||   |||| |||||||||||||| |||||||| |||    
T  8935660 aatacgatttcctttcactttggagcaacaaaagaatcactctgatgggttgagttttttgtcgttagatgatgaaaaactttgtttctcaaatagaata 8935759  T
Q  283 tttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacc 382  Q
    ||||||||||||||||||||||| ||||| || ||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8935760 tttcatttcacaaaagagaaaatcgtacagctgaaattaaaaatcaatgaagagattggtaccatcaaaatatcttctctacaagcgcctttaactcacc 8935859  T
Q  383 tttggtgctctgtg 396  Q
    ||||||||| ||||    
T  8935860 tttggtgctgtgtg 8935873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 8910525 - 8910919
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  8910525 aaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcatt 8910624  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaacagcc 200  Q
    |||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||||||| |||    
T  8910625 tcattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa----gttcaacggcc 8910720  T
Q  201 catacgatttcctttc------------------gtttacggtgatgaattgagtttttcgtcgtctaatgaggaaaaactttgtttatcaaataggata 282  Q
     |||||||||||||||                  | | ||  |||||  ||||||||||| |||  |||||||||||||| |||||||||||||||| ||    
T  8910721 tatacgatttcctttcactttggagcaacaaaaggatcactctgatgggttgagtttttcatcgcttaatgaggaaaaacattgtttatcaaataggtta 8910820  T
Q  283 tttcatttcacaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcac 381  Q
    |||||||||||||| ||||||||  ||||| | |||||||||||||| || ||||| || |||| ||||||||||||||||||||| ||||||||||||    
T  8910821 tttcatttcacaaaggagaaaatcctacaattgaaatcgaaaatcaacgaagagatcggcaccaccaaaatatcttctctacaagcacttttaactcac 8910919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 8934519 - 8934675
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| |||||||||||||||||||||||| || ||||||||||||| ||||||||||| || ||||| | |||| |||||||| |||||||||||||||    
T  8934519 aaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacggaaagtctgtgtggcatt 8934618  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaac 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  8934619 tcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatttaaac 8934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 8930064 - 8930211
Alignment:
Q  1 aaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacggagagtctgtgtggcatt 100  Q
    ||||| ||||||||| |||||||||| ||| || ||||||||||||| ||||||||||| || ||||| | |||| |||| ||| |||||||||| ||||    
T  8930064 aaaccattgttggcatttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgatggaaagtctgtgtgacatt 8930163  T
Q  101 tcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaa 148  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||    
T  8930164 tcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaa 8930211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 390
Target Start/End: Original strand, 8918826 - 8918924
Alignment:
Q  292 acaaaagagaaaattgtacaactaaaatcgaaaatcaatgatgagattggtaccatcaaaatatcttctctacaagcgcttttaactcacctttggtgc 390  Q
    ||||| ||||||||  ||||||| ||||| ||| ||||    |||||||||||| ||||||||| ||  ||| | ||||||||| ||||||||||||||    
T  8918826 acaaaggagaaaatcttacaactgaaatcaaaagtcaacacagagattggtaccgtcaaaatatatttcctatatgcgcttttagctcacctttggtgc 8918924  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 15190642 - 15190757
Alignment:
Q  97 catttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaac 196  Q
    |||||||||||||||  ||||||||| |||||| ||| ||| ||||   ||||||||  ||| |||||||| || ||||  |||||||||||  ||||||    
T  15190642 catttcatcaattcactggctgaaatctcacgtggttcttgccatc---aaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaac 15190738  T
Q  197 agcccatacgatttccttt 215  Q
      |||||||||||||||||    
T  15190739 gtcccatacgatttccttt 15190757  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 214
Target Start/End: Complemental strand, 6501176 - 6501058
Alignment:
Q  92 tgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgt 191  Q
    |||||||||| |||| ||| ||||||||||| |||||| |||||||   | |||||||||| |||| |||| ||||||| |||| ||||||||||| | |    
T  6501176 tgtggcattttatcagttcctgggctgaaatttcacgtggttgttg---taatcaaatatccaaactcccatcactagaacgtt-gtttccaaatgatat 6501081  T
Q  192 tcaacagcccatacgatttcctt 214  Q
    ||| |   |||||||||||||||    
T  6501080 tcagcgttccatacgatttcctt 6501058  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 11969575 - 11969547
Alignment:
Q  94 tggcatttcatcaattcatgggctgaaat 122  Q
    |||||||||||||||||||||||||||||    
T  11969575 tggcatttcatcaattcatgggctgaaat 11969547  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 215
Target Start/End: Original strand, 40146823 - 40146959
Alignment:
Q  76 gttgacggagagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgtt 175  Q
    ||||||||||||||    |||| |||||| |||||||||||  |||| || ||| ||||||| ||  ||||| |||| |||| |  ||| ||||| ||||    
T  40146823 gttgacggagagtccacatggcttttcattaattcatgggcgaaaatctcgcgtggttgttg-ca--atcaagtatccaaactcataacgctagaacgtt 40146919  T
Q  176 ggtttccaaatggtgttcaacagcccatacgatttccttt 215  Q
    ||||||||| |||| ||||||| |||||||||||||||||    
T  40146920 ggtttccaagtggtattcaacatcccatacgatttccttt 40146959  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 8103139 - 8103025
Alignment:
Q  98 atttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatggtgttcaaca 197  Q
    ||||||| ||||| ||||||||||| |||||| || |||||    |||||| ||| |||| | ||||||| || |||||||||||| ||||| |||||      
T  8103139 atttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttccagatggtattcaatg 8103040  T
Q  198 gcccatacgatttcc 212  Q
     ||||||||||||||    
T  8103039 tcccatacgatttcc 8103025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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