View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21670_high_11 (Length: 312)
Name: NF21670_high_11
Description: NF21670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21670_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 40269930 - 40269626
Alignment:
| Q |
1 |
accagaccggcatgagtacatccacaaagcaaaccaacaaaagtatgctcattcggcggaattccaaacttccccatttggccaaaaacaccaaatgcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40269930 |
accagaccggcatgagtacatccacaaagcaaaccaacaaaagtatgctcattcggcggaattccaaacttccccatttggccaaaaacaccaaatgcag |
40269831 |
T |
|
| Q |
101 |
ctccaacttgtccgtacatagccagtccagaaataacagcattgaaaaccacgcgatctttctccttcatcattttgtaaacccccaaagcctcctccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40269830 |
ctccaacttgtccgtacatagccagtccagaaataacagcattgaaaaccacgcgatctttctccttcatcattttgtaaacccccaaagcctcctccat |
40269731 |
T |
|
| Q |
201 |
gcttccacattttgcataaaaatcaattaaggaagtacctaacacagggttagacaaaaactcctcataattcatcaaacccttagcccaatttcccaac |
300 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40269730 |
gcttccacattttgcataaaaatcaatcaaggaagtacctaacacagggttagacaaaaactcctcataattcatcaaacccttagcccaatttcccaac |
40269631 |
T |
|
| Q |
301 |
tccaa |
305 |
Q |
| |
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||||| |
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| T |
40269630 |
tccaa |
40269626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 40260373 - 40260069
Alignment:
| Q |
1 |
accagaccggcatgagtacatccacaaagcaaaccaacaaaagtatgctcattcggcggaattccaaacttccccatttggccaaaaacaccaaatgcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40260373 |
accagaccggcatgagtacatccacaaagcaaaccaacaaaagtatgctcatttggcggaattccaaacttccccatttggccaaaaacaccaaatgcag |
40260274 |
T |
|
| Q |
101 |
ctccaacttgtccgtacatagccagtccagaaataacagcattgaaaaccacgcgatctttctccttcatcattttgtaaacccccaaagcctcctccat |
200 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40260273 |
ccccaacttgtccgtacatagccagtccagaaataacagcattgaaaaccatgcgatctttctccttcatcattttgtaaacccccaaagcctcctccat |
40260174 |
T |
|
| Q |
201 |
gcttccacattttgcataaaaatcaattaaggaagtacctaacacagggttagacaaaaactcctcataattcatcaaacccttagcccaatttcccaac |
300 |
Q |
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||||||||||||| ||||||||||||| ||| ||||||| |||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||||||| |
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| T |
40260173 |
gcttccacatttttcataaaaatcaatcaagtaagtacccaacacagggtcagacaaaaactcctcgtaattcatcaaacctttagtccaatttcccaac |
40260074 |
T |
|
| Q |
301 |
tccaa |
305 |
Q |
| |
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||||| |
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|
| T |
40260073 |
tccaa |
40260069 |
T |
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