View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21670_high_2 (Length: 366)
Name: NF21670_high_2
Description: NF21670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21670_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 189 - 362
Target Start/End: Complemental strand, 4055271 - 4055098
Alignment:
| Q |
189 |
tcaactcctctacttataaagtaaccattcaacctcaacgttgatgggtctaacccaaaagctatagctatggaaccaagatcaannnnnnnatcatcac |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4055271 |
tcaactcctctacttataaagtaaccattcaacctcaacgttgatgggtctaacccaaaagctatagctatggaaccaagatcaattttttcatcatcac |
4055172 |
T |
|
| Q |
289 |
aagtaacaagttcaacactttttgactttgagagtgaagggcataacagtaatatctttgtttctctgcttctc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
4055171 |
aagtaacaagttcaacactttttgactttgagagtgaagggcataacagtgatatctttgtttctctgtttctc |
4055098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 4055405 - 4055324
Alignment:
| Q |
56 |
cttgacaaaca-tacccttgttaacatctttgccagtaacaacaatagcatcatggttacttttcccagtagacaaacctct |
136 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4055405 |
cttgacaaacaatacccttgttaacatctttgccagtaacaacaatagcatcatggttacttttcccagtagacaaacctct |
4055324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University