View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21671_high_12 (Length: 337)
Name: NF21671_high_12
Description: NF21671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21671_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 12819154 - 12819285
Alignment:
| Q |
56 |
tgttaaaaatatataagacacccaataaaatcgagagtgggaaaacattcaaagagagattttcttttagtatatagatatagaccatattttctgcact |
155 |
Q |
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| T |
12819154 |
tgttaaaaatatataagacacccaatgaaatcgagagtgggaaaacattcaaagagagattttcttatagtatatagatatagaccatattttctgcact |
12819253 |
T |
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| Q |
156 |
attttcttgaaaacaaaagttggtgaaagcaa |
187 |
Q |
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| T |
12819254 |
attttcttgaaaacaaaagttggtgaaagcaa |
12819285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 196 - 328
Target Start/End: Original strand, 12819336 - 12819468
Alignment:
| Q |
196 |
aaactcaacaggtcatgcaaagatatcagaaaagcaatataaggaacaatgtcaaaggaccacgacattcttcgtatgaatcagttatcattatccattg |
295 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
12819336 |
aaactcaacaggtcctgcaaagatctcagaaaagcaatataaggaacaatgtcaaaggaccacggcattcttcgtatgaatcagttatcattatcaattg |
12819435 |
T |
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| Q |
296 |
aggtatgtatcatagagtactatgcagtattat |
328 |
Q |
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| T |
12819436 |
aggtatgtatcatagcgtactatgcagtattat |
12819468 |
T |
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