View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21671_high_16 (Length: 323)
Name: NF21671_high_16
Description: NF21671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21671_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 35767979 - 35767812
Alignment:
| Q |
1 |
aaaatgactctgttagacatgcgagtgaaactgcaaaacaaaagaatggaaacnnnnnnntgaattagcttgaccaagatgccatgactgcaaggtaaga |
100 |
Q |
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| T |
35767979 |
aaaatgactctgttagacatgcgagtgaaactgcaaaacaaaagaatggaaacaaaaaaatgaattagcttgaccaagatgccatgactgcaaggtaaga |
35767880 |
T |
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| Q |
101 |
tcaccagtgacacaaaggttgtgtggtnnnnnnnnnccaagtatatcattataaggtatagaaataaa |
168 |
Q |
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| T |
35767879 |
tcaccagtgacacaaaggttgtgtggtaaaaaataaccaagtatatcattataaggtatagaaataaa |
35767812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 164 - 315
Target Start/End: Complemental strand, 35767673 - 35767526
Alignment:
| Q |
164 |
ataaaccatattctaaacacggcaaaaaatcagtcagttcaatatcttgtcnnnnnnnnnnnnnnnnntcagtcagttcaatatattatctttaacaaag |
263 |
Q |
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| T |
35767673 |
ataaaccatattctaaacacggcaataaatcagtcagttcaatatcttgtcaaaaataaataaaaaa-tcagtcagttaa---tattatctttaacaaag |
35767578 |
T |
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| Q |
264 |
ttttgaagtaaacaaaattaatacaaaaactgaatttcctcatagaataatc |
315 |
Q |
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| T |
35767577 |
ttttgaagtaaacaaaattaatacaaaaactgaatttcctcatagaagaatc |
35767526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 232 - 303
Target Start/End: Complemental strand, 20496379 - 20496308
Alignment:
| Q |
232 |
tcagtcagttcaatatattatctttaacaaagttttgaagtaaacaaaattaatacaaaaactgaatttcct |
303 |
Q |
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| T |
20496379 |
tcagtgagttcaatatattataggtaacaaagttttgaagtaaatgaaattaatacaaatactgaatttcct |
20496308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 20496646 - 20496585
Alignment:
| Q |
63 |
aattagcttgaccaagatgccatgactgcaaggtaagatcaccagtgacacaaaggttgtgt |
124 |
Q |
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|||||||||||||| |||||||| |||||||| | | |||| ||||||||||| |||||||| |
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| T |
20496646 |
aattagcttgaccatgatgccataactgcaagcttatatcatcagtgacacaagggttgtgt |
20496585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 168
Target Start/End: Original strand, 21218200 - 21218230
Alignment:
| Q |
138 |
caagtatatcattataaggtatagaaataaa |
168 |
Q |
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| T |
21218200 |
caagtatatcattataaggtatagaaataaa |
21218230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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