View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21671_high_20 (Length: 313)
Name: NF21671_high_20
Description: NF21671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21671_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 43211742 - 43211515
Alignment:
| Q |
3 |
aaccagttataaactacaatattatatatcaagttttctgtaaaatggtttgagaagtgagaaccagcataccataaaaacaaatgttgtaaaatgaaga |
102 |
Q |
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| T |
43211742 |
aaccagttataaactacaatattatatatcaagttttctgtaaaatggtttgagaagtgagaatcagcataccataaaaacaaatgttgtaaaatgaaga |
43211643 |
T |
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| Q |
103 |
aaagagattaaaagggaaacagtatggaattgacacacgctcgtacacggcactgacacaagtagtaaattaaaaaatataagtaattgaatgtaactac |
202 |
Q |
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| T |
43211642 |
aaagagattaaaagggaaacagtttggaattgacacacgctcgtacacggcactgacacaggtagtaaattaaaaaatataagtaattgaatgtaactac |
43211543 |
T |
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| Q |
203 |
aactgtcggcatcgtgtcggacaccaaa |
230 |
Q |
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| T |
43211542 |
aactgtcggcgtcgtgtcggacaccaaa |
43211515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 43211473 - 43211405
Alignment:
| Q |
240 |
tatgcagtcccgtgtattttgtgtttcactacatagatctctcatttataataaaagccaacaccaaac |
308 |
Q |
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| T |
43211473 |
tatgcagtcccgtgtattttgtgtttcactacatagatctctcatttataacaaaagccaacacaaaac |
43211405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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