View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21671_high_21 (Length: 312)

Name: NF21671_high_21
Description: NF21671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21671_high_21
NF21671_high_21
[»] chr1 (1 HSPs)
chr1 (1-293)||(50654340-50654631)


Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 50654340 - 50654631
Alignment:
Q  1 gttataaacttggtggcttctaaggtgagagagccatcaagttcctcaccagtgtactattggatctattaaaataattaaagggttcagatatattaaa 100  Q
    |||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50654340 gttataaacttggtggcaga-aaggtgagagagccatcaagttcctcaccagtgtaccattggatctattaaaataattaaagggttcagatatattaaa 50654438  T
Q  101 aaattaagagtagcacataagtcttccctcacccaatccctccttgtttaactctttccctgctaaaccttccttgttatgatgtcttcaccttcaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50654439 aaattaagagtagcacataagtcttccctcacccaatccctccttgtttaactctttccctgctaaaccttccttgttatgatgtcttcaccttcaattt 50654538  T
Q  201 acgccactgacttatcttgttttctactcaagtgtaaaatcaattattgttcagcacaaccagaaaagttgcaacccatgataataataacat 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  50654539 acgccactgacttatcttgttttctactcaagtgtaaaatcaattattgttcagcacaaccagaaaagttgcgacccatgataataataacat 50654631  T

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