View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21671_high_3 (Length: 392)
Name: NF21671_high_3
Description: NF21671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21671_high_3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 42814399 - 42814015
Alignment:
| Q |
1 |
atatttaccttggtaagaaattcacctttggaataccaagaatacatcatagagtgaagcatcacatcacaaaaaagagcaaggagatatcattttggtg |
100 |
Q |
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| T |
42814399 |
atatttaccttggtaagaaattcacctttggaataccaagaatacatcatagagtgaagcatcacatcacaaaaaagagcaaggagatatcattttggtg |
42814300 |
T |
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| Q |
101 |
aagaataaagcaagtttcaaaaagcacacttatctaccatcttcacatataaagagacattagaacttaactttagtggcattgaacacttgtatgactt |
200 |
Q |
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| T |
42814299 |
aagaataaagcaagtttcaaaaagcacacttatctaccatcttcacatataaagagacattagaacttaactttagtggcattgaacacttgtatgactt |
42814200 |
T |
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| Q |
201 |
gaaaaacattaccattaagagtaaggctagtttcttttactgaaccgttggagttggtggctaaattattcactcagnnnnnnnnnnnnnnngaatcatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42814199 |
gaaaaacattaccattaagagtaaggctagtttcttttactgaaccgttggagttggtggctaaattattcactcag-------aaaaaaaagaatcatt |
42814107 |
T |
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| Q |
301 |
cttaactataatgacagcaataataatgagggagtttaacatcaaagtcttttatctaactagctggtaccactgtataaatgtccatctct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42814106 |
cttaactataatgacagcaataataatgagggagtttaacatcaaagtcttttatctaactagctggtaccactgtataaatgtccatctct |
42814015 |
T |
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