View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21672_high_13 (Length: 375)
Name: NF21672_high_13
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_13 |
 | |
|
| [»] scaffold0728 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 356
Target Start/End: Complemental strand, 30614243 - 30613907
Alignment:
| Q |
21 |
catcatcattacatgtttctgtttcgcggtctctgttattcttgtatatggacnnnnnnn-aaagaatactgtgcagagatttggttattaataaatttt |
119 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| || ||||||||||||||||||||||| ||| |
|
|
| T |
30614243 |
catcatcattacatgtttctgtttcgctgtctctgttattcttgtatagggactttttttcaaagaatattgcgcagagatttggttattaataaacttt |
30614144 |
T |
|
| Q |
120 |
ttcgttaataaaacattaacaggtaggtgacgttcctcttcaggtttgttttcgtcggttatttgatttatcaaaaaataaatatgcaacatggtggcac |
219 |
Q |
| |
|
| |||||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||| | |
|
|
| T |
30614143 |
tctgttaataaaatattaacaggtaggcgacgttcctcttcaggttcgtttttgtcggttatttgatttatcagaaaataaatatgcaacacggtggcgc |
30614044 |
T |
|
| Q |
220 |
aaatatttaacttgcggtgggacgaggggggaggcgtggaagtggagagaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttatt |
319 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
30614043 |
aaatatttaacttggggtgggacgaggggggaggcgtggaagtggagagaagtttacgggtgtgggaggaggagttggtagtagaatgtaggttgttatt |
30613944 |
T |
|
| Q |
320 |
attgtatgtggtgttgcaggttgatgttgatgatgtc |
356 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
30613943 |
attatatgtggtgttgcatattgatgttgatgatgtc |
30613907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 10382713 - 10382788
Alignment:
| Q |
281 |
gtgggaggaggagttggtagtaaaatgtaggttgttattattgtatgtggtgttgcaggttgatgttgatgatgtc |
356 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
10382713 |
gtgggaggaggagttgttaggggaatctaggttgttattactaactgtggtgttgcaggttaatgttgatgatgtc |
10382788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 17185679 - 17185729
Alignment:
| Q |
306 |
tgtaggttgttattattgtatgtggtgttgcaggttgatgttgatgatgtc |
356 |
Q |
| |
|
||||||| | |||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
17185679 |
tgtaggtcgctattattgaatgttgtgttgcaggttaatgttgatgatgtc |
17185729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 356
Target Start/End: Original strand, 1426 - 1536
Alignment:
| Q |
247 |
ggggaggcgtggaagtggaga--gaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtatgtggtgttgcaggttgat |
344 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||| |||||||||||| || |||| | |||||||||||||||||| ||| ||| |||||||| || |
|
|
| T |
1426 |
ggggaggcatggaagtggagaaggaagtt-acgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgcaggttaat |
1524 |
T |
|
| Q |
345 |
gttgatgatgtc |
356 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1525 |
gttgatgatgtc |
1536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 247 - 356
Target Start/End: Original strand, 6366 - 6476
Alignment:
| Q |
247 |
ggggaggcgtggaagtggaga--gaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtatgtggtgttgcaggttgat |
344 |
Q |
| |
|
|||||||| |||||||||||| |||||| ||||| |||||||||||| || |||| | |||||||||||||||||| ||| ||| |||||||| || |
|
|
| T |
6366 |
ggggaggcatggaagtggagaaggaagtt-acgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgcaggttaat |
6464 |
T |
|
| Q |
345 |
gttgatgatgtc |
356 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6465 |
gttgatgatgtc |
6476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 25094807 - 25094760
Alignment:
| Q |
155 |
ctcttcaggtttgttttcgtcggttatttgatttatcaaaaaataaat |
202 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||| ||||||||| |
|
|
| T |
25094807 |
ctcttcaggtttgttttcgtcgcttatttattttatcagaaaataaat |
25094760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 1073826 - 1073776
Alignment:
| Q |
306 |
tgtaggttgttattattgtatgtggtgttgcaggttgatgttgatgatgtc |
356 |
Q |
| |
|
|||||| |||||||||||| ||| || ||||||||| |||||||||||||| |
|
|
| T |
1073826 |
tgtaggatgttattattgtctgttgtattgcaggttaatgttgatgatgtc |
1073776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 317
Target Start/End: Complemental strand, 17620369 - 17620287
Alignment:
| Q |
237 |
tgggacgaggggg-gaggcgtggaagtggag-agaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgtta |
317 |
Q |
| |
|
||||||||||||| ||||||||||||||||| || || || ||| ||||||| |||||||||||| | | |||||||||||| |
|
|
| T |
17620369 |
tgggacgagggggagaggcgtggaagtggaggaggaggttgtgggcgtgggagaaggagttggtagcagagtgtaggttgtta |
17620287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 13897252 - 13897204
Alignment:
| Q |
90 |
tgtgcagagatttggttattaataaattttttcgttaataaaacattaa |
138 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
13897252 |
tgtgcagatatttagttattaataaattttatcgttaaaaaaatattaa |
13897204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University