View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21672_high_20 (Length: 354)
Name: NF21672_high_20
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 23238651 - 23238305
Alignment:
| Q |
1 |
aacactgtcattgtaccaaacatcagctcctgcaccgtcgttccctgcggtatctgattcatattcgtcactgggaaattgttgttcccattattattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23238651 |
aacactgtcattgtaccaaacatcagctcctgcaccgtcgttccctgcggtatctgattcatattcgtcactgggaaattgttgttcccattattattgt |
23238552 |
T |
|
| Q |
101 |
tattattgaacacattccctgtgtttccactgagtcctgttaggaaagggaggttgttgttgtttagaattccattattgttgttgttctgtggaatgcc |
200 |
Q |
| |
|
|||| |||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||||||||| || |
|
|
| T |
23238551 |
tatt---gaacacgtttcctgtgttcccactgagtcctgttaggaaaggaaggttgttgttgtttaggattccgttgttgttattgttctgtggaacacc |
23238455 |
T |
|
| Q |
201 |
gttgtttagtggaaggtttgcgccgtttggctttgcaaatgcaacttgtgcgttgagggccggatttgtaacgactccggtcactgctcttgctgttgga |
300 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23238454 |
gttgtttagaggaaggtttgcgccatttggctttgcaaatgcaacttgagcattgagggccggatttgtaacgactccggtcactgctcttgctgttgga |
23238355 |
T |
|
| Q |
301 |
ttggagccacctagaatgtcatgcatgaaaaatgatagtctgtggtgctg |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23238354 |
ttggagccacctagaatgtcatgcatgaaaaatgatagtgtgtggtgctg |
23238305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 23214470 - 23214813
Alignment:
| Q |
1 |
aacactgtcattgtaccaaacatcagctcctgcaccgtcgttccctgcggtatctgattcatattcgtcactgggaaattgttgttcccattattattgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23214470 |
aacactgtcattgtaccaaacatcagctcctgcaccgtcgttccctgcggtatctgattcatattcgtcactgggaaattgtt---cccattattattgt |
23214566 |
T |
|
| Q |
101 |
tattattgaacacattccctgtgtttccactgagtcctgttaggaaagggaggttgttgttgtttagaattccattattgttgttgttctgtggaatgcc |
200 |
Q |
| |
|
||| ||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||||||||| || |
|
|
| T |
23214567 |
tat---tgaacacgtttcctgtgttcccactgagtcctgttaggaaaggaaggttgttgttgtttaggattccgttgttgttattgttctgtggaacacc |
23214663 |
T |
|
| Q |
201 |
gttgtttagtggaaggtttgcgccgtttggctttgcaaatgcaacttgtgcgttgagggccggatttgtaacgactccggtcactgctcttgctgttgga |
300 |
Q |
| |
|
||||||||| ||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23214664 |
gttgtttagaggaaggtttgcaccatttggctttgcaaatgcaacttgagcattgagggccggatttgtaacgactccggtcactgctcttgctgttgga |
23214763 |
T |
|
| Q |
301 |
ttggagccacctagaatgtcatgcatgaaaaatgatagtctgtggtgctg |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
23214764 |
ttggagccacctagaatgtcatgcatgaaaaacgatagtgtgtggtgctg |
23214813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University