View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21672_high_21 (Length: 354)

Name: NF21672_high_21
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21672_high_21
NF21672_high_21
[»] chr7 (10 HSPs)
chr7 (1-99)||(35073965-35074065)
chr7 (1-68)||(35100732-35100800)
chr7 (1-47)||(35085466-35085512)
chr7 (1-86)||(42795346-42795434)
chr7 (231-268)||(42795614-42795651)
chr7 (155-207)||(42795502-42795554)
chr7 (164-207)||(35085284-35085327)
chr7 (157-200)||(43026940-43026983)
chr7 (26-68)||(43026796-43026838)
chr7 (164-207)||(35100591-35100634)


Alignment Details
Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 35074065 - 35073965
Alignment:
Q  1 gaaacaggtacgataagctgcttttctcaagtatctc-tatatctcttctactctccaagcgatacttatttatgtttgtaaaa-tcatgtgattttcat 98  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | ||  |||||||| ||||| |||||||||    
T  35074065 gaaacaggtacaataagctgcttttctcaagtatctcttatctctcttctactctccaagcgatacttaatcatcattgtaaaattcatgcgattttcat 35073966  T
Q  99 c 99  Q
    |    
T  35073965 c 35073965  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35100800 - 35100732
Alignment:
Q  1 gaaacaggtacgataagctgcttttctcaagtatctc-tatatctcttctactctccaagcgatactta 68  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  35100800 gaaacaggtacgataagctgcttttctcaagtatctcttatctctcttctactctccaagcgatactta 35100732  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35085512 - 35085466
Alignment:
Q  1 gaaacaggtacgataagctgcttttctcaagtatctctatatctctt 47  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  35085512 gaaacaggtacgataagctgcttttctcaagtatctctatctctctt 35085466  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 42795346 - 42795434
Alignment:
Q  1 gaaacaggtacgataagctgcttttct----caagtatctctatatctcttctactctccaagcgatacttatttatgtttgtaaaatca 86  Q
    ||||||||| ||||||||| |||| ||    ||| ||||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  42795346 gaaacaggtgcgataagctactttactttatcaattatctctatctctcttatactctccaagcgatacttatttatg-ttgtaaaatca 42795434  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 42795614 - 42795651
Alignment:
Q  231 ctctgctccttttatgagtgggaggcccatcccgtcat 268  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42795614 ctctgctccttttatgagtgggaggcccatcccgtcat 42795651  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 42795502 - 42795554
Alignment:
Q  155 cgatgttgaggggtaattcagtgcgggtttataagtgttgtctggtttcgatt 207  Q
    |||||| ||||||||| ||||||||||||||||||||||  ||||||||||||    
T  42795502 cgatgtggaggggtaactcagtgcgggtttataagtgttagctggtttcgatt 42795554  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 35085327 - 35085284
Alignment:
Q  164 ggggtaattcagtgcgggtttataagtgttgtctggtttcgatt 207  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  35085327 ggggtaattcagtgcgggtttataagtgtcgtctggtttggatt 35085284  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 43026940 - 43026983
Alignment:
Q  157 atgttgaggggtaattcagtgcgggtttataagtgttgtctggt 200  Q
    |||| ||||||||||||||||||||||||||||||| |||||||    
T  43026940 atgtggaggggtaattcagtgcgggtttataagtgtcgtctggt 43026983  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 43026796 - 43026838
Alignment:
Q  26 ctcaagtatctctatatctcttctactctccaagcgatactta 68  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  43026796 ctcaagtatctctatctctcttctactatccaagcgatactta 43026838  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 35100634 - 35100591
Alignment:
Q  164 ggggtaattcagtgcgggtttataagtgttgtctggtttcgatt 207  Q
    ||||||||||| ||||||||||||||||| ||||||||| ||||    
T  35100634 ggggtaattcaatgcgggtttataagtgtcgtctggtttggatt 35100591  T

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