View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21672_high_23 (Length: 343)
Name: NF21672_high_23
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 18139195 - 18139473
Alignment:
| Q |
9 |
tcaatgtaataggaattaatggtgatcatttaagtttgacctatcacttactcctnnnnnnnttctgacccatcactttaatacatcagtaaatgaattg |
108 |
Q |
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| T |
18139195 |
tcaatgtaataggaatgaatagtgatcatttaagtttgacctatcacttactcctaaaaaaactttgacctatcactttaatatatcaataaatgaattg |
18139294 |
T |
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| Q |
109 |
atattaaaatttgtctccatatactccattctattatccttattatataataagtatttttgttttatatgaataaattagcatcaattatatatgtaca |
208 |
Q |
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| T |
18139295 |
atattaaaatttgtctccatatactccattctattatccttattatataataagtatttttgttttatatgaataaattagcatcaattatatatgtaca |
18139394 |
T |
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| Q |
209 |
tgtatatatgtgtgtgaatttagaaatttacacctaattatttagaaattatttccacgcattaaaactcgactttttc |
287 |
Q |
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| T |
18139395 |
tgtatatatgtgtgtgaatttagaaatttacacctaactatttagaaattatttccacgcattaaaactcgactttttc |
18139473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 287
Target Start/End: Original strand, 49126408 - 49126686
Alignment:
| Q |
9 |
tcaatgtaataggaattaatggtgatcatttaagtttgacctatcacttactcctnnnnnnnttctgacccatcactttaatacatcagtaaatgaattg |
108 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |||| ||||||||||| |
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| T |
49126408 |
tcaatgtaataggaatgaatagtgatcatttaagtttgacctatcacttactcctaaaaaaactttgacctatcactttaatatatcaataaatgaattg |
49126507 |
T |
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| Q |
109 |
atattaaaatttgtctccatatactccattctattatccttattatataataagtatttttgttttatatgaataaattagcatcaattatatatgtaca |
208 |
Q |
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| T |
49126508 |
atattaaaatttgtctccatatactccattctattatccttattatataataagtatttttgttttatatgaataaattagcatcaattatatatgtaca |
49126607 |
T |
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| Q |
209 |
tgtatatatgtgtgtgaatttagaaatttacacctaattatttagaaattatttccacgcattaaaactcgactttttc |
287 |
Q |
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| T |
49126608 |
tgtatatatgtgtgtgaatttagaaatttacacctaactatttagaaattatttccacgcattaaaactcgactttttc |
49126686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 18139462 - 18139498
Alignment:
| Q |
307 |
ctcgattttttcttcatttttctgtatgagtttttaa |
343 |
Q |
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| T |
18139462 |
ctcgactttttctccatttttctgtatgagtttttaa |
18139498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 343
Target Start/End: Original strand, 49126675 - 49126711
Alignment:
| Q |
307 |
ctcgattttttcttcatttttctgtatgagtttttaa |
343 |
Q |
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||||| ||||||| ||||||||||||||||||||||| |
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| T |
49126675 |
ctcgactttttctccatttttctgtatgagtttttaa |
49126711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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