View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21672_high_24 (Length: 343)
Name: NF21672_high_24
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 29 - 181
Target Start/End: Complemental strand, 28448134 - 28447982
Alignment:
| Q |
29 |
catcatcatcgatgtagaggggaggtctgtaggcctgacgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccagcgcacaa |
128 |
Q |
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| T |
28448134 |
catcatcatcgatgtagaggggaggtctgtaggtctgatgcctatagaaatagacaaccactccaacaaaagattgaaggccgtaacttccaacgcacaa |
28448035 |
T |
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| Q |
129 |
aataggaaccccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
181 |
Q |
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| T |
28448034 |
aataggaaccccagagagaggaacaccgaagccaaggccagccaaagcccaaa |
28447982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 18690684 - 18690607
Alignment:
| Q |
101 |
attgaaggccgtaacttccagcgcacaaaataggaaccccagagagaggaacaccgaagccaaggccagccaaagccc |
178 |
Q |
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|||||||| |||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
18690684 |
attgaaggttgtaacttccaacgcaaaaactaggaacctcagagagaggaacaccgaagccaaggccaaccaaagccc |
18690607 |
T |
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