View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21672_high_26 (Length: 340)
Name: NF21672_high_26
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 15636716 - 15636383
Alignment:
| Q |
1 |
tctttcattgcgtcaaacacatatagtcctaaaccgcacacacccatgacaaagtcagaattaccccaaacttgtgaaactgctgcgtaatgtgagtgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15636716 |
tctttcattgcgtcaaacacatatagtcctaaaccgcacacacccatgacaaagtcagaattaccccaaacttgtgaaactgctgcgtaatgtgagtgtg |
15636617 |
T |
|
| Q |
101 |
cattggattctggaaaagtataggtgttgaatagttcttgtttccgcaacgaaaattgttgtatcagcgatgatgactgtcttttccccattgaagtgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
15636616 |
cattggattctggaaaagtataggtgttgaatagttcttgtttccgcaacgaaaattgttgtattagcgatgatgactgtcttttccccattgtagtgga |
15636517 |
T |
|
| Q |
201 |
agcggtgcatccaaggaagacagaatcgccgcgagagaaaatagattgtacattgacaccaccatgttttggtatcttaagaccaacaccggatggttgg |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15636516 |
agcggtgcatccaaagaagacagaatcgccgcgagagaaaatagattgtacattgacaccaccatgttttggtatcttaagaccaacaccggatggttgg |
15636417 |
T |
|
| Q |
301 |
cgaaagtccaatatgttgatagaatctgtggtgc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
15636416 |
cgaaagtccaatatgttgatagaatctgtggtgc |
15636383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University