View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21672_high_30 (Length: 336)

Name: NF21672_high_30
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21672_high_30
NF21672_high_30
[»] chr4 (8 HSPs)
chr4 (4-305)||(9593409-9593711)
chr4 (4-324)||(9581610-9581918)
chr4 (4-324)||(9587305-9587613)
chr4 (4-311)||(9602199-9602520)
chr4 (205-328)||(9606067-9606190)
chr4 (1-143)||(9569331-9569473)
chr4 (128-294)||(9569616-9569780)
chr4 (84-151)||(54291085-54291150)
[»] chr6 (4 HSPs)
chr6 (1-198)||(29131447-29131643)
chr6 (84-191)||(32740480-32740587)
chr6 (93-217)||(29145527-29145651)
chr6 (1-62)||(32740592-32740653)
[»] chr7 (1 HSPs)
chr7 (93-215)||(42446568-42446690)
[»] scaffold0054 (2 HSPs)
scaffold0054 (94-157)||(39601-39664)
scaffold0054 (94-157)||(33250-33313)
[»] chr5 (1 HSPs)
chr5 (96-129)||(43323021-43323054)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 8e-92; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 4 - 305
Target Start/End: Complemental strand, 9593711 - 9593409
Alignment:
Q  4 aagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaagga 103  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |||| ||||||| | |||||| |||||| | |||||||||||    
T  9593711 aagataaagaactagtttgtcttgatttaaatactcaaacgattgtgaagcttgcttgcaaaaaagtgaattctattgatcggatattaatatacaagga 9593612  T
Q  104 aaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaa 203  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| ||||  ||||| ||||||| |||||||| ||    
T  9593611 aaacattcttccaattggaggaataagtaattagttattttccttgttttcaccaggagcaaaatgatcgtggtgattggaatattaccttgtatgcaaa 9593512  T
Q  204 gtgtcttgtcaattagaa-tctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcat 302  Q
    |||||||||||||| ||| || | ||||||| ||||||| |||||||| |||||||||||||| |||||| ||||||||||  || ||||||| ||||||    
T  9593511 gtgtcttgtcaattggaattccctgagattgcttgaatcggtagcgggtcattatccttgtattgttgctcatgcttatgtggttttgttttttgctcat 9593412  T
Q  303 ctg 305  Q
    |||    
T  9593411 ctg 9593409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 9581918 - 9581610
Alignment:
Q  4 aagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaagga 103  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||| || |||||||     
T  9581918 aagataaagaactagtttgtcttgatttaagtactcaaatgattgtggagcttgcttacaaagaagtgaattctattgatcggatagtaatgtacaagg- 9581820  T
Q  104 aaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaa 203  Q
    ||||||||||||||||||||||||||||| ||||||||||||         ||| |||| |||||||||||||  ||||||||||||| || ||| | ||    
T  9581819 aaacattcttccaattggaggaataagtaattagttattttt---------accaggagtaaaatgattgtggtgattgggatattaccttatatacaaa 9581729  T
Q  204 gtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatc 303  Q
    |||||||||||||| ||||  | ||||| | ||||||| ||||| ||||||| |||||||||||| ||||||| || |||  ||||| ||||||||||||    
T  9581728 gtgtcttgtcaatttgaattccagagatcgcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatc 9581630  T
Q  304 tgttgctgcttttctggtctg 324  Q
    || ||||| ||||||||||||    
T  9581629 tggtgctg-ttttctggtctg 9581610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 9587613 - 9587305
Alignment:
Q  4 aagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaagga 103  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||| || |||||||     
T  9587613 aagataaagaactagtttgtcttgatttaagtactcaaatgattgtggagcttgcttacaaagaagtgaattctattgatcggatagtaatgtacaagg- 9587515  T
Q  104 aaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaa 203  Q
    ||||||||||||||||||||||||||||| ||||||||||||         ||| |||| |||||||||||||  ||||||||||||| || ||| | ||    
T  9587514 aaacattcttccaattggaggaataagtaattagttattttt---------accaggagtaaaatgattgtggtgattgggatattaccttatatacaaa 9587424  T
Q  204 gtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatc 303  Q
    |||||||||||||| ||||  | ||||| | ||||||| ||||| ||||||| |||||||||||| ||||||| || |||  ||||| ||||||||||||    
T  9587423 gtgtcttgtcaatttgaattccagagatcgcttgaatcggtagcaggccattgtccttgtatcgtcgctgatgattctgtggttctg-ttttggctcatc 9587325  T
Q  304 tgttgctgcttttctggtctg 324  Q
    || ||||| ||||||||||||    
T  9587324 tggtgctg-ttttctggtctg 9587305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 4 - 311
Target Start/End: Complemental strand, 9602520 - 9602199
Alignment:
Q  4 aagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccgg-------atagtcatat 96  Q
    ||||||||||| |||||| ||||||||||||||||||| || ||||||||||| |||||||||||||||| | |||||| ||        ||| | ||||    
T  9602520 aagataaagaagtagtttgtcttgatttaagtactcaatcggttgtggagctttcttacaaagaagtgaattctattgatcgtcgatcgaatactaatat 9602421  T
Q  97 acaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatg-------attgtggccattgggatatt 189  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||       ||||  |  |||||||||||    
T  9602420 acaaggaaaacattcttccaatcggaggaataagtaattagttatttttcttgttttcaccaggagcaaaatgcaaaatgattgcagtgattgggatatt 9602321  T
Q  190 acattgtatgcgaagtgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttct 289  Q
    || |||||||| |||||||||||||||| ||| | ||||||||  || |||| |||||||||||||||||||||||||| |||||||| ||| |  || |    
T  9602320 accttgtatgcaaagtgtcttgtcaattggaaccccggagatttcttaaatcggtagcgggccattatccttgtatcgtcgctgatgcatatatggtttt 9602221  T
Q  290 gtttttggctcatctgttgctg 311  Q
    |||||||||||||||| |||||    
T  9602220 gtttttggctcatctggtgctg 9602199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 205 - 328
Target Start/End: Complemental strand, 9606190 - 9606067
Alignment:
Q  205 tgtcttgtcaattagaatctcggagattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct 304  Q
    ||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9606190 tgtcttgtcaattagaatctcggagattgcttgaatcggtagcgagccattatccttgtatcgttgctgatgcttatgtccttctgtttttggctcatct 9606091  T
Q  305 gttgctgcttttctggtctgtggt 328  Q
    ||||||||||||||||||||||||    
T  9606090 gttgctgcttttctggtctgtggt 9606067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 9569331 - 9569473
Alignment:
Q  1 gaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaa 100  Q
    ||||||||||||| ||||||| | |||||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||  ||||||| ||||||||    
T  9569331 gaaaagataaagagctagtttgtattgatttaagtactcaaatgattgtggagcttgtttacaaagaagtgaattctattgataggatagtaatatacaa 9569430  T
Q  101 ggaaaacattcttccaattggaggaataagtatttagttattt 143  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  9569431 ggaaaatattcttccaattggaggaataagtaattagttattt 9569473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 128 - 294
Target Start/End: Original strand, 9569616 - 9569780
Alignment:
Q  128 aagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtatgcgaagtgtcttgtcaattagaatctcgg 227  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||  |  |||||  ||    
T  9569616 aagtaattagttatttttcttgttttcacgaggagcaaaatgattgtggtgattgggatattaccttgtatgcaaagtgtcttgtc--taggaatcctgg 9569713  T
Q  228 agattgattgaatctgtagcgggccattatccttgtatcgttgctgatgcttatgtccttctgtttt 294  Q
    |||||| || |||| |||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  9569714 agattgctttaatcggtagcgggccattatccttgtatcgtcgctgatgcttatgtggttctgtttt 9569780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 54291085 - 54291150
Alignment:
Q  84 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgtt 151  Q
    |||||| | ||||||||||||||||||||||| |||||| ||||  ||| ||| || |||||||||||    
T  54291085 cggataataatatacaaggaaaacattcttcccattggaagaat--gtaattaattgtttttcttgtt 54291150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 29131447 - 29131643
Alignment:
Q  1 gaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttacaaagaagtgaactgtattgaccggatagtcatatacaa 100  Q
    |||||||| ||||||||||||  |||||||||||||| ||||  |||| || ||||| |||||||| ||||     || |   |||||| | ||||||||    
T  29131447 gaaaagatgaagaactagtttggcttgatttaagtacgcaaagaattgcggggcttggttacaaaggagtgggtcatactagtcggataataatatacaa 29131546  T
Q  101 ggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattacattgtat 198  Q
    ||| |||||||||||||||||||||| |||||  ||||| || ||| |||||||||  |||| |||||||||| || ||||||| |||||| ||||||    
T  29131547 ggataacattcttccaattggaggaacaagtaagtagtt-ttcttcctgttttcactgggaggaaaatgattgcggtcattgggctattaccttgtat 29131643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 32740587 - 32740480
Alignment:
Q  84 cggatagtcatatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgg 183  Q
    |||||| | |||||| |||| || ||||||| ||||||||||| ||||| |||||| ||||||||||||||||  |||| |||||||||  || ||||||    
T  32740587 cggataataatatacgaggataatattcttcaaattggaggaacaagtaattagttttttttcttgttttcactgggaggaaaatgatttcggtcattgg 32740488  T
Q  184 gatattac 191  Q
    ||||||||    
T  32740487 gatattac 32740480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 29145527 - 29145651
Alignment:
Q  93 atatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattaca 192  Q
    |||||||||||| ||||||||||||||||||||  |||||  || || ||||||||||| |||||  |||  | ||||||||||   ||| |||||||||    
T  29145527 atatacaaggaatacattcttccaattggaggagcaagtagctaattgtttttcttgttatcaccaagaggtatatgattgtggttgttgagatattaca 29145626  T
Q  193 ttgtatgcgaagtgtcttgtcaatt 217  Q
    || ||||| || ||  |||||||||    
T  29145627 ttttatgcaaactggtttgtcaatt 29145651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32740653 - 32740592
Alignment:
Q  1 gaaaagataaagaactagtttatcttgatttaagtactcaaacgattgtggagcttgcttac 62  Q
    |||||||| ||||||||||||  ||||||||| |||| |||| ||||| |||||||| ||||    
T  32740653 gaaaagatgaagaactagtttggcttgatttatgtacacaaaggattgcggagcttggttac 32740592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 42446568 - 42446690
Alignment:
Q  93 atatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacctggagcaaaatgattgtggccattgggatattaca 192  Q
    ||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||  |||  | ||||||||||   ||| ||||||||     
T  42446568 atatacaaggaaaacattcttccaattggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggttcttgagatattacc 42446667  T
Q  193 ttgtatgcgaagtgtcttgtcaa 215  Q
    |||||| | ||||  ||||||||    
T  42446668 ttgtatacaaagtcccttgtcaa 42446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 39664 - 39601
Alignment:
Q  94 tatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacc 157  Q
    ||||||||||||||||||||  ||||| ||||||||||| ||| ||||||||||||||||||||    
T  39664 tatacaaggaaaacattcttgtaattgaaggaataagtaattaattatttttcttgttttcacc 39601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 33313 - 33250
Alignment:
Q  94 tatacaaggaaaacattcttccaattggaggaataagtatttagttatttttcttgttttcacc 157  Q
    |||||||||||||||||||| | |||| ||||||||||| ||| ||||||||| ||||||||||    
T  33313 tatacaaggaaaacattcttgccattgaaggaataagtaattaattatttttcatgttttcacc 33250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 43323021 - 43323054
Alignment:
Q  96 tacaaggaaaacattcttccaattggaggaataa 129  Q
    |||||||||||||| |||||||||||||||||||    
T  43323021 tacaaggaaaacatgcttccaattggaggaataa 43323054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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