View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21672_high_34 (Length: 334)

Name: NF21672_high_34
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21672_high_34
NF21672_high_34
[»] chr8 (5 HSPs)
chr8 (61-306)||(38335998-38336243)
chr8 (123-189)||(30277254-30277317)
chr8 (98-149)||(11185256-11185304)
chr8 (123-156)||(25869275-25869308)
chr8 (123-156)||(28769348-28769381)
[»] chr6 (5 HSPs)
chr6 (123-156)||(17241261-17241294)
chr6 (92-150)||(5566158-5566213)
chr6 (125-166)||(7931800-7931841)
chr6 (123-151)||(2160946-2160974)
chr6 (123-151)||(31583712-31583740)
[»] chr5 (3 HSPs)
chr5 (123-156)||(29590638-29590671)
chr5 (18-64)||(38845651-38845697)
chr5 (123-156)||(33533548-33533581)
[»] chr2 (6 HSPs)
chr2 (123-154)||(32615951-32615982)
chr2 (132-174)||(29419871-29419913)
chr2 (124-158)||(41032965-41032999)
chr2 (123-156)||(3611365-3611398)
chr2 (123-156)||(16867767-16867800)
chr2 (18-66)||(680423-680471)
[»] chr4 (4 HSPs)
chr4 (18-64)||(21691360-21691406)
chr4 (18-64)||(33456273-33456319)
chr4 (123-156)||(7694019-7694052)
chr4 (124-156)||(35743310-35743342)
[»] chr3 (5 HSPs)
chr3 (18-64)||(1290680-1290726)
chr3 (97-156)||(9279312-9279368)
chr3 (92-151)||(37273167-37273223)
chr3 (124-156)||(26542565-26542597)
chr3 (123-151)||(29771871-29771899)
[»] chr1 (5 HSPs)
chr1 (122-156)||(11893601-11893635)
chr1 (18-64)||(15084733-15084779)
chr1 (123-156)||(11211146-11211179)
chr1 (123-156)||(33108631-33108664)
chr1 (123-156)||(35925718-35925751)
[»] scaffold0286 (1 HSPs)
scaffold0286 (123-151)||(16143-16171)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 61 - 306
Target Start/End: Original strand, 38335998 - 38336243
Alignment:
Q  61 caaatacattgatataatcaattttcagaatagctaatggaaacagcttataacatgtagtacataagttgttttcaacttatttccataaactctatgg 160  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38335998 caaatacattgatataatcacttttcagaatagctgatggaaacagcttataacatgtagtacataagttgttttcaacttatttccataaactctatgg 38336097  T
Q  161 gatagcaaatgaaaccaacagcttatatagcttatgataaatacaatgcgaataacaacataactcaccgttattgacattgatgtcagcattatgagaa 260  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38336098 gatagcaaatgaaactaacagcttatatagcttatgataaatacaatgcgaataacaacataactcaccgttattgacattgatgtcagcattatgagaa 38336197  T
Q  261 tcatttttgggagaaattagttgagattctttgtgagtggttgatg 306  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  38336198 tcatttttgggagaaattagttgagattcttcgtgagtggttgatg 38336243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Original strand, 30277254 - 30277317
Alignment:
Q  123 cataagttgttttcaacttatttccataaactctatgggatagcaaatgaaaccaacagcttatata 189  Q
    ||||||||||||||| |||||||||||||||||| | |||||||  |||||   |||||||||||||    
T  30277254 cataagttgttttcagcttatttccataaactctctaggatagcttatgaa---aacagcttatata 30277317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 11185304 - 11185256
Alignment:
Q  98 tggaaacagcttataacatgtagtacataagttgttttcaacttatttccat 149  Q
    |||||||| ||||||||||||    |||||||||||||||||||||||||||    
T  11185304 tggaaacatcttataacatgtt---cataagttgttttcaacttatttccat 11185256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 25869275 - 25869308
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||| ||||||||||||||||||    
T  25869275 cataagttgttttcagcttatttccataaactct 25869308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 28769348 - 28769381
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||| ||||||||||||||||||    
T  28769348 cataagttgttttcagcttatttccataaactct 28769381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 17241261 - 17241294
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||||||||||||||||||||||    
T  17241261 cataagttgttttcaacttatttccataaactct 17241294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 5566158 - 5566213
Alignment:
Q  92 agctaatggaaacagcttataacatgtagtacataagttgttttcaacttatttccata 150  Q
    |||||||| ||||||||||| ||||||    ||||||||||||||||||||||||||||    
T  5566158 agctaatgaaaacagcttattacatgtc---cataagttgttttcaacttatttccata 5566213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 7931800 - 7931841
Alignment:
Q  125 taagttgttttcaacttatttccataaactctatgggatagc 166  Q
    ||||||||||||| ||||||||||||| |||||| |||||||    
T  7931800 taagttgttttcagcttatttccataagctctataggatagc 7931841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Original strand, 2160946 - 2160974
Alignment:
Q  123 cataagttgttttcaacttatttccataa 151  Q
    |||||||||||||||||||||||||||||    
T  2160946 cataagttgttttcaacttatttccataa 2160974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 31583740 - 31583712
Alignment:
Q  123 cataagttgttttcaacttatttccataa 151  Q
    |||||||||||||||||||||||||||||    
T  31583740 cataagttgttttcaacttatttccataa 31583712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 29590638 - 29590671
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||||||||||||||||||||||    
T  29590638 cataagttgttttcaacttatttccataaactct 29590671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 38845651 - 38845697
Alignment:
Q  18 tctacaccttcagaatcaattttagcccctctagaagtggaaccaaa 64  Q
    ||||||||| ||||||||||||| | | |||||||||||||||||||    
T  38845651 tctacacctccagaatcaattttggtctctctagaagtggaaccaaa 38845697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 33533548 - 33533581
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||||||||||||||||| ||||    
T  33533548 cataagttgttttcaacttatttccataagctct 33533581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 32615982 - 32615951
Alignment:
Q  123 cataagttgttttcaacttatttccataaact 154  Q
    ||||||||||||||||||||||||||||||||    
T  32615982 cataagttgttttcaacttatttccataaact 32615951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 174
Target Start/End: Complemental strand, 29419913 - 29419871
Alignment:
Q  132 ttttcaacttatttccataaactctatgggatagcaaatgaaa 174  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  29419913 ttttcaacttatttccataaactctctaggatagcatatgaaa 29419871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 41032965 - 41032999
Alignment:
Q  124 ataagttgttttcaacttatttccataaactctat 158  Q
    |||||||||||||| ||||||||||||||||||||    
T  41032965 ataagttgttttcagcttatttccataaactctat 41032999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 3611398 - 3611365
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    |||||||||||||||||||||||||| |||||||    
T  3611398 cataagttgttttcaacttatttccacaaactct 3611365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 16867800 - 16867767
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||||||||||||||||| ||||    
T  16867800 cataagttgttttcaacttatttccataagctct 16867767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 680423 - 680471
Alignment:
Q  18 tctacaccttcagaatcaattttagcccctctagaagtggaaccaaata 66  Q
    |||||||||  ||||||||||||||| |||| | |||||||||||||||    
T  680423 tctacacctctagaatcaattttagctcctccaaaagtggaaccaaata 680471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 21691360 - 21691406
Alignment:
Q  18 tctacaccttcagaatcaattttagcccctctagaagtggaaccaaa 64  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||||    
T  21691360 tctacacctccagaatcaattctggtccctctagaagtggaaccaaa 21691406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 33456319 - 33456273
Alignment:
Q  18 tctacaccttcagaatcaattttagcccctctagaagtggaaccaaa 64  Q
    ||||||| |||| |||||||| ||| |||||||||||||||||||||    
T  33456319 tctacacattcaaaatcaattatagtccctctagaagtggaaccaaa 33456273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 7694019 - 7694052
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||| ||||||||||||||||||    
T  7694019 cataagttgttttcagcttatttccataaactct 7694052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 35743342 - 35743310
Alignment:
Q  124 ataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||| |||||||||||||||||||||    
T  35743342 ataagttgtttccaacttatttccataaactct 35743310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 1290726 - 1290680
Alignment:
Q  18 tctacaccttcagaatcaattttagcccctctagaagtggaaccaaa 64  Q
    |||||||||  ||||||||||||||  ||||||||||||||||||||    
T  1290726 tctacacctctagaatcaattttagttcctctagaagtggaaccaaa 1290680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 9279312 - 9279368
Alignment:
Q  97 atggaaacagcttataacatgtagtacataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||||||||   ||| ||||| |||||||| ||||||||| ||||||||    
T  9279312 atggaaacagcttataacat---gtatataagctgttttcagcttatttccttaaactct 9279368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 37273223 - 37273167
Alignment:
Q  92 agctaatggaaacagcttataacatgtagtacataagttgttttcaacttatttccataa 151  Q
    |||| ||||||||| ||||| ||||||    |||||||||||||||||||||||||||||    
T  37273223 agcttatggaaacaacttatgacatgtc---cataagttgttttcaacttatttccataa 37273167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 26542597 - 26542565
Alignment:
Q  124 ataagttgttttcaacttatttccataaactct 156  Q
    |||| ||||||||||||||||||||||||||||    
T  26542597 ataacttgttttcaacttatttccataaactct 26542565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 29771899 - 29771871
Alignment:
Q  123 cataagttgttttcaacttatttccataa 151  Q
    |||||||||||||||||||||||||||||    
T  29771899 cataagttgttttcaacttatttccataa 29771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Original strand, 11893601 - 11893635
Alignment:
Q  122 acataagttgttttcaacttatttccataaactct 156  Q
    |||||||||||||||| ||||||||||||||||||    
T  11893601 acataagttgttttcagcttatttccataaactct 11893635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 15084733 - 15084779
Alignment:
Q  18 tctacaccttcagaatcaattttagcccctctagaagtggaaccaaa 64  Q
    |||||||||||||||||||| ||  ||||||||||||| ||||||||    
T  15084733 tctacaccttcagaatcaatattgacccctctagaagtagaaccaaa 15084779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 11211179 - 11211146
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||| ||||||||||||||||||||    
T  11211179 cataagttgtttttaacttatttccataaactct 11211146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Original strand, 33108631 - 33108664
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    ||||||||||||||||||||||||||||| ||||    
T  33108631 cataagttgttttcaacttatttccataagctct 33108664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 35925751 - 35925718
Alignment:
Q  123 cataagttgttttcaacttatttccataaactct 156  Q
    |||||| |||||||||||||||||||||||||||    
T  35925751 cataagctgttttcaacttatttccataaactct 35925718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 16171 - 16143
Alignment:
Q  123 cataagttgttttcaacttatttccataa 151  Q
    |||||||||||||||||||||||||||||    
T  16171 cataagttgttttcaacttatttccataa 16143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University