View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21672_high_35 (Length: 332)

Name: NF21672_high_35
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21672_high_35
NF21672_high_35
[»] chr8 (4 HSPs)
chr8 (155-266)||(25450760-25450871)
chr8 (155-266)||(25446197-25446308)
chr8 (55-164)||(25450779-25450888)
chr8 (72-164)||(25446216-25446308)
[»] chr6 (4 HSPs)
chr6 (155-273)||(31901501-31901621)
chr6 (160-271)||(31925372-31925485)
chr6 (65-164)||(31901520-31901621)
chr6 (67-164)||(31925386-31925485)
[»] chr7 (4 HSPs)
chr7 (155-273)||(2606833-2606953)
chr7 (65-164)||(2606833-2606934)
chr7 (274-321)||(31137784-31137831)
chr7 (26-64)||(31669466-31669504)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 25450760 - 25450871
Alignment:
Q  155 aatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatacagcagaaatatat 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  25450760 aatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatatagcagaaatatat 25450859  T
Q  255 tagcctttgtta 266  Q
    ||||||||||||    
T  25450860 tagcctttgtta 25450871  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 25446197 - 25446308
Alignment:
Q  155 aatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaatacagcagaaatatat 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  25446197 aatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtacaaccgtgtgtaaaatatagcagaaatatat 25446296  T
Q  255 tagcctttgtta 266  Q
    ||||||||||||    
T  25446297 tagcctttgtta 25446308  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 25450888 - 25450779
Alignment:
Q  55 gtgatattcctataaaataacaagggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatca 154  Q
    |||||||| |||  || |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25450888 gtgatatttctaataattaacaaaggctaatatatttctgctatattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatca 25450789  T
Q  155 aatgcattta 164  Q
    ||||||||||    
T  25450788 aatgcattta 25450779  T

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Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 25446308 - 25446216
Alignment:
Q  72 taacaagggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcattta 164  Q
    |||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  25446308 taacaaaggctaatatatttctgctatattttacacacggttgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcattta 25446216  T

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Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 31901501 - 31901621
Alignment:
Q  155 aatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaa--atacagcagaaatat 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||    
T  31901501 aatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaaagatatagcataaatat 31901600  T
Q  253 attagcctttgttattttata 273  Q
    |||||||||||||||||||||    
T  31901601 attagcctttgttattttata 31901621  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 31925372 - 31925485
Alignment:
Q  160 atttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaa--atacagcagaaatatattag 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||  ||| |||| |||||||||||    
T  31925372 atttaattattatgtaaatgcatttgattaccttgtaaagcttggacaactataaagccttgtacaaccgtgtgtaaaagatatagcataaatatattag 31925471  T
Q  258 cctttgttatttta 271  Q
    ||||||||||||||    
T  31925472 cctttgttatttta 31925485  T

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Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 31901621 - 31901520
Alignment:
Q  65 tataaaataacaagggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcatt 162  Q
    ||||||||||||| ||||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31901621 tataaaataacaaaggctaatatatttatgctatatcttttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt 31901522  T
Q  163 ta 164  Q
    ||    
T  31901521 ta 31901520  T

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Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 31925485 - 31925386
Alignment:
Q  67 taaaataacaagggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcattta 164  Q
    ||||||||||| ||||||||||||| |||| |||  ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  31925485 taaaataacaaaggctaatatatttatgctatatcttttacacacggttgtacaaggctttatagttgtccaagctttacaaggtaatcaaatgcattta 31925386  T

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Target: chr7 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 2606953 - 2606833
Alignment:
Q  155 aatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacagctataaagccttgtacagccgtgtgtaaa--atacagcagaaatat 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||| |||||||||||    
T  2606953 aatgcatttaattattatgtaaatgcatttgattaccttgtaaagcttggacatctataaagccttgtacagccatgtgtaaaatatatagcagaaatat 2606854  T
Q  253 attagcctttgttattttata 273  Q
    |||||||||||||||||||||    
T  2606853 attagcctttgttattttata 2606833  T

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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 65 - 164
Target Start/End: Original strand, 2606833 - 2606934
Alignment:
Q  65 tataaaataacaagggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcatt 162  Q
    ||||||||||||| |||||||||||||||||| |||  |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  2606833 tataaaataacaaaggctaatatatttctgctatatattttacacatggctgtacaaggctttatagatgtccaagctttacaaggtaatcaaatgcatt 2606932  T
Q  163 ta 164  Q
    ||    
T  2606933 ta 2606934  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 31137831 - 31137784
Alignment:
Q  274 gactttgctaatttggagctcaataccacattctttagtgatgatgtc 321  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  31137831 gactttgctaatttggagctcaataccacattctttagtgattatgtc 31137784  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 31669466 - 31669504
Alignment:
Q  26 atcatcatatacccacaattcatagtttagtgatattcc 64  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31669466 atcatcatatacccacaattcatagtttagtgatattcc 31669504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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