View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21672_high_38 (Length: 330)
Name: NF21672_high_38
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_38 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0491 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 1440 - 1139
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
1440 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1341 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1340 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
1241 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1141 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
1140 |
gt |
1139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 6327 - 6026
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
6327 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
6228 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
6227 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
6128 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
6127 |
tatcgtgaagctttatggtttctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
6028 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
6027 |
gt |
6026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 18739561 - 18739260
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18739561 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18739462 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739461 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
18739362 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18739361 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
18739262 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
18739261 |
gt |
18739260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 18744525 - 18744224
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18744525 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18744426 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744425 |
ttgccttaaagaaacttcaccgctatgaagcagaggttccatcttttgatgatagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
18744326 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18744325 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
18744226 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
18744225 |
gt |
18744224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 18749486 - 18749185
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18749486 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18749387 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
18749386 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
18749287 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
18749286 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
18749187 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
18749186 |
gt |
18749185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 18723834 - 18723533
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18723834 |
gacataatcaaagcgacagaagactttgacatgagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
18723735 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||| |
|
|
| T |
18723734 |
ttgccttaaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaattttaacagaaataaagcacaaaca |
18723635 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
|
|
| T |
18723634 |
tatagtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggatagaggaagcttattctctgtcttgtatgatgat |
18723535 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
18723534 |
gt |
18723533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 18733045 - 18732996
Alignment:
| Q |
156 |
cttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaag |
205 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
18733045 |
cttttgattagagttttagaaatgaagtgagaatattatcagaaataaag |
18732996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 1541790 - 1541489
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
1541790 |
gacatcatcaaagcaacagaagacttcgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggaaaggttg |
1541691 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541690 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcaccgaca |
1541591 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
1541590 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctatcaatacatggagagaggaagcttattctctgtcttgtatgatgat |
1541491 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
1541490 |
gt |
1541489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 1595896 - 1596197
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
1595896 |
gacataatcaaagcaacagaagactttgacatgagatattgcattggaacgggagcatatggaagtgtttacagggcacaattaccaagtggaaaggttg |
1595995 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1595996 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgaca |
1596095 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1596096 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctgtcttgtatgatgat |
1596195 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
1596196 |
gt |
1596197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 1088490 - 1088791
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
1088490 |
gacattattaaagcaacagaggactttgacatgagatattgcattggaacaggagcatatagaagtgtttacaaggcacaattaccaagtggcaaggttg |
1088589 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
1088590 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcacaaaca |
1088689 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1088690 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1088789 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
1088790 |
gt |
1088791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 1105839 - 1106140
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
1105839 |
gacataatcaaagcaacggaagactttgacatgagatattgcattggaactggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttg |
1105938 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1105939 |
ttgccttaaagaaacttcacggctatgaagtcgaggttccatcttttgatgagagtttcaaaaatgaagtgagaatattatcagaaataaagcaccgaca |
1106038 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
1106039 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcagtacatggagaaaggaagcctgttctctatcttgtatgatgat |
1106138 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
1106139 |
gt |
1106140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 1557734 - 1557433
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| || |||| |
|
|
| T |
1557734 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggtaatgttg |
1557635 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
1557634 |
ttgctttaaagaaacttcacggctatgaagctgaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagaaataaagcacaaaca |
1557535 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1557534 |
tatcgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatatatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
1557435 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
1557434 |
gt |
1557433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 1604237 - 1604527
Alignment:
| Q |
25 |
agcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaag |
124 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1604237 |
agcaacggaagacttcgacatgagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccaagtggcaaggttgttgccttaaag |
1604336 |
T |
|
| Q |
125 |
aaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagc |
224 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604337 |
aaacttcacggctatgaagaagaggttccatcttttgatgagagtttcaaaaatgaagtgaaaatattatcagaaataaagcaccgacatattgtgaagc |
1604436 |
T |
|
| Q |
225 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1604437 |
tttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgatgt |
1604527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 1551024 - 1550723
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||| |
|
|
| T |
1551024 |
gacattattaaagcaacagaagactttgacatgagatattgcattggaaccggagcatatggaagtgtttacaaggcacaattaccatgtggcaaggttg |
1550925 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
1550924 |
tcgccttaaagaaacttcatggctatgaagcagacgttccatcttttgatgagagtttcagaaatgaagtgagaatattgacagaaataaagcaccgaca |
1550825 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
1550824 |
tattgtgaagcttcatggattctgcttgcacaagagaatcatgtttttgatctatcagtacatggagagaggaagcttgttcactgtcttgtatgacgat |
1550725 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
1550724 |
gt |
1550723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 2329530 - 2329828
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
2329530 |
gacatcattaaagcaacagaagactttgacattagatattgtattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttg |
2329629 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || |
|
|
| T |
2329630 |
ttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgagaatattatcagatataaagcaccggca |
2329729 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatga |
312 |
Q |
| |
|
||| |||||||||||||||||||| | |||| ||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2329730 |
tatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctgtcttgtatgatga |
2329828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 14 - 312
Target Start/End: Original strand, 2337429 - 2337727
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
2337429 |
gacattattaaagcaacagaagactttgacattagatattgcattgggacaggagcatatggaagtgtttataaggcacaattaccatgtggaaaagttg |
2337528 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| |
|
|
| T |
2337529 |
ttgcaataaagaaacttcacggctatgaagcagaggttccatcttttgatgagagtttcagaaatgaagtgaaaatattatcagatataaagcaccgaca |
2337628 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatga |
312 |
Q |
| |
|
||| |||||||||||||||||||| | |||| ||||||||||||||||||||| | |||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2337629 |
tatcgtgaagctttatggattctgtctccacagaagaatcatgtttttgatctacgagtacatggagaaaggtagcttgttctctggcttgtatgatga |
2337727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 2321032 - 2321332
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
|||||||| | |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |
|
|
| T |
2321032 |
gacatcattagagcaacggaagattttgacattagatattgcattggaacaggagcatatggaagtgtttacaaggcacaattaccatgtggaaaagttg |
2321131 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||| | ||| |||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
2321132 |
ttgccttgaagaaacttcacggctatgaagcagagctgccagcttttgatgaaagttttagaaatgaagtgagaatattatcagaaataaagcaccgaaa |
2321231 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
2321232 |
tattgtgaagctttatggattttgcttgcacaaaagaatcatgtttttgatctaccattacatggagagaggaagtttgttctccgtcttgtatgatgat |
2321331 |
T |
|
| Q |
314 |
g |
314 |
Q |
| |
|
| |
|
|
| T |
2321332 |
g |
2321332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 3955782 - 3955480
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
3955782 |
gacatcattagagcaacaaaagactttgacattaaatattgcattggaaaaggagcatatggaagtgtttacaaggcacaattaccaagtggtaaatttg |
3955683 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||| |||| |||||||| |||| ||||| ||||| |||||| ||||||| ||||| ||||| ||||||| |||||||||||||||||||||| || | |
|
|
| T |
3955682 |
ttgcactaaaaaaacttcatagctacgaagcagaggtgccatctcttgatgaaagttttagaaatgaagtgaaaatattatcagaaataaagcacagaaa |
3955583 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||| | ||||||||||||||||| || ||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
3955582 |
tattgtgaagctttatggattttgtttgcataaaagagttatgtttttgatctatcagtatatggaaaaaggaagcttgttctccgtcttgcatgatgat |
3955483 |
T |
|
| Q |
314 |
gtc |
316 |
Q |
| |
|
||| |
|
|
| T |
3955482 |
gtc |
3955480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 315
Target Start/End: Complemental strand, 9532375 - 9532075
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| || ||||||| | || |||||||||| ||||||||||| | |||||||||||||||||||| || ||| | ||||||||| ||| || |||| |
|
|
| T |
9532375 |
gacattattaaagcaatacaacactttgacattagatattgcatatggacaggagcatatggaagtgtatacaagactcaattaccatgtgacaaagttg |
9532276 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
| |||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||| ||| |||| ||||||||||| | ||||||| ||| | | |
|
|
| T |
9532275 |
tcgccttaaagaaacttcacatctatgaagcagaggtgccatcttttgatgcgagtttcaaaaatgaagcgagaatattataaaaaataaatcacataaa |
9532176 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
|||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||| | ||||||||||| |||||||| | |||||||||||| |
|
|
| T |
9532175 |
tattgttaagctttatggattatgattgtacaaaagaatcatgtttttgatctatcaatacgt-gagaaaggaagtttgttctcgtttttgtatgatgat |
9532077 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
9532076 |
gt |
9532075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 30792145 - 30792447
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| || ||||||||| || |||||||||| ||||||| ||| | ||| ||| | ||| |||||| || ||| | || ||| || |||| || |||| |
|
|
| T |
30792145 |
gacattattaaagcaacataacactttgacattagatattacatcgagacatgaggacatgaaagtgtatacaagactcatttatcatgtggcaaagttg |
30792244 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
|||||||| ||||||||||| ||||||| | | || ||||||||| | ||||||| ||| |||||||||||||||||| ||||||||||| | | |
|
|
| T |
30792245 |
ttgccttatagaaacttcacaactatgaaacaaatgtgtcatcttttgttacaagtttcataaatgaagtgagaatattatcataaataaagcacataaa |
30792344 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcac-aaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatga |
312 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| | |||||| |||||| ||||| ||| ||||||||||| |
|
|
| T |
30792345 |
tattgttaagctttatagattctgcttgcacaaaaagaatcgtgtttttgatctatcaatacgtagagaaaagaagctagttctttgttttgtatgatga |
30792444 |
T |
|
| Q |
313 |
tgt |
315 |
Q |
| |
|
||| |
|
|
| T |
30792445 |
tgt |
30792447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 315
Target Start/End: Original strand, 19250247 - 19250547
Alignment:
| Q |
14 |
gacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttg |
113 |
Q |
| |
|
||||| || ||||||||| || |||||||||| ||||||||||| |||||| |||||| |||||| || ||| | | ||||||| |||| || |||| |
|
|
| T |
19250247 |
gacattattaaagcaacacaacactttgacattagatattgcatcatgacaggatcatatgaaagtgtatacaagactcgattaccatgtggtaaagttg |
19250346 |
T |
|
| Q |
114 |
ttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgaca |
213 |
Q |
| |
|
| || ||||||||| ||||| |||||||| || || || |||||||||| ||||||||||| |||||||||||||||||| | ||||| ||| | | |
|
|
| T |
19250347 |
tcgctttaaagaaatttcacaactatgaagtagatgtgccgtcttttgatgcgagtttcagaattgaagtgagaatattatcatatataaaacacataaa |
19250446 |
T |
|
| Q |
214 |
tattgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatgatgat |
313 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || |||||||||||| |
|
|
| T |
19250447 |
tattgttaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacat-gaaaaatgaagcttgttctcggttttgtatgatgat |
19250545 |
T |
|
| Q |
314 |
gt |
315 |
Q |
| |
|
|| |
|
|
| T |
19250546 |
gt |
19250547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 36 - 309
Target Start/End: Complemental strand, 41669093 - 41668820
Alignment:
| Q |
36 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
135 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
41669093 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
41668994 |
T |
|
| Q |
136 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
235 |
Q |
| |
|
||||||||| || || |||||||||||| ||||||||||| ||||||| |||||||| | |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
41668993 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcagaattgaagtgaaaatattataaaaaataaagcagataaatattgttaagctttatggattt |
41668894 |
T |
|
| Q |
236 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
309 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
41668893 |
tgcttgcacaaaagaataatgtttttaatctatcgatacatgaaaaaagaaagtttgttctcagttttgtatga |
41668820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 36 - 309
Target Start/End: Complemental strand, 42978019 - 42977746
Alignment:
| Q |
36 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
135 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
42978019 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
42977920 |
T |
|
| Q |
136 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
235 |
Q |
| |
|
||||||||| || || |||||||||||| || |||||||| |||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
42977919 |
ctatgaagcagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
42977820 |
T |
|
| Q |
236 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
309 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
42977819 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatga |
42977746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 36 - 308
Target Start/End: Original strand, 54122784 - 54123056
Alignment:
| Q |
36 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
135 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
54122784 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
54122883 |
T |
|
| Q |
136 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
235 |
Q |
| |
|
||||||||| || || |||||||||||| |||||||| || |||||||||||||||| | |||||||||| | |||| | ||||||||| ||| |
|
|
| T |
54122884 |
ctatgaagcagatgtgtcatcttttgatgtgagtttcacaattgaagtgagaatattataaaaaataaagcagataaatatctttaagctttatatattt |
54122983 |
T |
|
| Q |
236 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatg |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || ||||||| |
|
|
| T |
54122984 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcagttttgtatg |
54123056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 36 - 297
Target Start/End: Complemental strand, 48712677 - 48712417
Alignment:
| Q |
36 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
135 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
48712677 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgccaccttaaagaaacttcacaa |
48712578 |
T |
|
| Q |
136 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
235 |
Q |
| |
|
|||| |||| || || | |||||||||| || |||||||| |||||||||||||||||| ||||||| || | ||||||| |||||||||||||| |
|
|
| T |
48712577 |
ctattaagcagatgtgtcttcttttgatgcgattttcagaattgaagtgagaatattatcaaaaataaa-cagataaatattgttaagctttatggattt |
48712479 |
T |
|
| Q |
236 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
297 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
48712478 |
tgcttgcacaaaagaatcatattttcaatctatcaatacatgaaaaaagaaagtttgttctc |
48712417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 12 - 208
Target Start/End: Original strand, 16880134 - 16880331
Alignment:
| Q |
12 |
tggacatcatcaaagcaacagaagactttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggt |
111 |
Q |
| |
|
||||||| || |||| |||| || |||||||||| ||||||||||| || ||| |||||||||||||||| || ||| | | ||||||| | | || || |
|
|
| T |
16880134 |
tggacattattaaagaaacacaacactttgacattagatattgcatcggcacaagagcatatggaagtgtatacaagactcgattaccatcttgcaaagt |
16880233 |
T |
|
| Q |
112 |
tgttgccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaa-gtgagaatattatcagaaataaagcac |
208 |
Q |
| |
|
|| |||||||||||| ||||| |||||||| | || |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
16880234 |
tgccgccttaaagaaatttcacaactatgaagtaaaagtgtcatcttttgatgcgagtttcagaaatgaatgtgagaatattatcagaaataaagcac |
16880331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 297
Target Start/End: Original strand, 31657883 - 31658144
Alignment:
| Q |
36 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
135 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||| |||||||||| || ||| | |||||| || |||| || |||| ||||||||||||||||| |
|
|
| T |
31657883 |
actttgacattagatattgcatcgtgacataagcacatggaagtgtatacaagactcaattatcatgtggcaaatttgtcaccttaaagaaacttcacaa |
31657982 |
T |
|
| Q |
136 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
235 |
Q |
| |
|
||| ||| || || |||||||||||| || |||||||| |||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |
|
|
| T |
31657983 |
ctacgaaatagatgtgtcatcttttgatgcgaatttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattt |
31658082 |
T |
|
| Q |
236 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
297 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
31658083 |
tgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
31658144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 117 - 309
Target Start/End: Original strand, 36620555 - 36620744
Alignment:
| Q |
117 |
ccttaaagaaacttcacggctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatat |
216 |
Q |
| |
|
||||||||||||||||| |||| |||| || || ||||||||||| ||||||||||| |||||||||||||||||| |||||||||| | |||| |
|
|
| T |
36620555 |
ccttaaagaaacttcacaactattaagcagatgt---atcttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatat |
36620651 |
T |
|
| Q |
217 |
tgtgaagctttatggattctgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
309 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| | | || ||| |||||||| || |||||||| |
|
|
| T |
36620652 |
tgttaagctttatggattttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaagagaaagtttgttctcggttttgtatga |
36620744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 36 - 297
Target Start/End: Complemental strand, 8873340 - 8873078
Alignment:
| Q |
36 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
135 |
Q |
| |
|
|||||||||| ||||||||||| | ||| ||||||||||||||| || ||| | |||||| || |||| || ||| ||||||||||||||||| |
|
|
| T |
8873340 |
actttgacattagatattgcatcgtgacataagcatatggaagtgtatacaagactcaattatcatgtggcaaatttgcgaccttaaagaaacttcacaa |
8873241 |
T |
|
| Q |
136 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
235 |
Q |
| |
|
||||||||| || || |||| ||||||| |||||||||| |||||||||||||||| | |||||||||| | ||||| | |||||||||||||| |
|
|
| T |
8873240 |
ctatgaagcagatgtgtcatcgtttgatgccagtttcagaattgaagtgagaatattataaaaaataaagcagataaatattattaagctttatggattt |
8873141 |
T |
|
| Q |
236 |
t-gcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctc |
297 |
Q |
| |
|
| ||||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| |
|
|
| T |
8873140 |
ttgcttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctc |
8873078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 309
Target Start/End: Complemental strand, 39102416 - 39102260
Alignment:
| Q |
153 |
catcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattctgcttgcacaaaagaat |
252 |
Q |
| |
|
|||||||||||| |||||| |||| |||||||||||||||||| |||||||||| | ||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
39102416 |
catcttttgatgcgagttttagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaagctttatggattttgcttgcacaaaagaag |
39102317 |
T |
|
| Q |
253 |
catgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
309 |
Q |
| |
|
||||||||| || |||||||||||| | | || ||| |||||||| || |||||||| |
|
|
| T |
39102316 |
catgtttttaatatatcaatacatgaaaagagaaagtttgttctcggttttgtatga |
39102260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 36 - 309
Target Start/End: Original strand, 1257677 - 1257950
Alignment:
| Q |
36 |
actttgacatgagatattgcattggaacaggagcatatggaagtgtttataaggcacaattaccaagtggaaaggttgttgccttaaagaaacttcacgg |
135 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||||| |||||| || ||| | |||||| || |||| | ||| ||||||||||||||||| |
|
|
| T |
1257677 |
actttgacattagatattgcatcgtgacataagcatatgaaagtgtatacaagactcaattatcatgtggccaatttgccaccttaaagaaacttcacaa |
1257776 |
T |
|
| Q |
136 |
ctatgaagccgaggttccatcttttgatgagagtttcagaaacgaagtgagaatattatcagaaataaagcaccgacatattgtgaagctttatggattc |
235 |
Q |
| |
|
|||||||| || || ||| |||||||| ||||||||||| |||||||||||||||||| |||||||||| | ||||||| || ||||||| ||| |
|
|
| T |
1257777 |
atatgaagcagatgtgtcattttttgatgcgagtttcagaattgaagtgagaatattatcaaaaataaagcagataaatattgttaaactttatgaattt |
1257876 |
T |
|
| Q |
236 |
tgcttgcacaaaagaatcatgtttttgatctatcaatacatggagaaaggaagcttgttctctgtcttgtatga |
309 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||| | |||| ||| |||||||| || |||||||| |
|
|
| T |
1257877 |
tgtttgcacaaaagaatcatgtttttaatctatcaatacatgaaaaaagaaagtttgttctcggttttgtatga |
1257950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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