View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21672_high_41 (Length: 315)
Name: NF21672_high_41
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_41 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 39 - 315
Target Start/End: Original strand, 6046886 - 6047162
Alignment:
| Q |
39 |
gtcagtgtttcaatcttagtttgagaggaagtttgggaaagagatgccgtgaacagataaaatatttacgacttccatatgacgccactgatgactatcc |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6046886 |
gtcagtgtttcaatcttagtttgagaggaagtttgggaaagagatgccgtgaacagataaaatatttacgacttccatatgacgccactgatgactatcc |
6046985 |
T |
|
| Q |
139 |
atttcaagttgaacttcattatggttatggatcacatgatgaagatgaagatgaagatgaagactacccatcggggatctcagacatagaccttttatct |
238 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6046986 |
atttcgagttgaacttcattatggttatggatcacatgatgaagatgaagatgaagatgaagactacccatcggggatctcagacatagaccttttatct |
6047085 |
T |
|
| Q |
239 |
gacaatgattatgaatatgatgaattcttaggtgggagtgaattttctgaatatgattacgatgacgactatgatta |
315 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6047086 |
gacaatgattatgactatgatgaattcttaggtgggagtgaattttctgaatatgattacgatgacgactatgatta |
6047162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 39 - 302
Target Start/End: Original strand, 6043585 - 6043830
Alignment:
| Q |
39 |
gtcagtgtttcaatcttagtttgagaggaagtttgggaaagagatgccgtgaacagataaaatatttacgacttccatatgacgccactgatgactatcc |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |||||| ||||||| ||||||||||| || ||||| ||||| || |
|
|
| T |
6043585 |
gtcagtgtttcaatcttagtttgagaggaagtttggggaagaaatgtcgtgaacaaataaaagatttacggcttccatatgatgctactgaggactaccc |
6043684 |
T |
|
| Q |
139 |
atttcaagttgaacttcattatggttatggatcacatgatgaagatgaagatgaagatgaagactacccatcggggatctcagacatagaccttttatct |
238 |
Q |
| |
|
|||||||||| | | |||| ||||||||||| ||||| ||||||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
6043685 |
atttcaagttatagct---tatgattatggatcacctgatg------------aagatgaagactacccatctgggatctcagacatggatcttttatct |
6043769 |
T |
|
| Q |
239 |
gacaatgattatgaatatgatgaattcttaggtgggagtgaattttctgaatatgattacgatg |
302 |
Q |
| |
|
||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
6043770 |
gacgatgattatgaatatgacgaattct---ctgggagtgaattttctgaatatgattccgatg |
6043830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 212 - 288
Target Start/End: Original strand, 6060889 - 6060965
Alignment:
| Q |
212 |
gggatctcagacatagaccttttatctgacaatgattatgaatatgatgaattcttaggtgggagtgaattttctga |
288 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||| || |||||||||||||||||| |
|
|
| T |
6060889 |
gggatctcaaacatagaccttttgtctgacaatgattttgaatattatgaattctcagatgggagtgaattttctga |
6060965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 6053692 - 6053794
Alignment:
| Q |
43 |
gtgtttcaatcttagtttgagaggaagtttgggaaagagatgccgtgaacagataaaatatttacgacttccatatgacgccactgatgactatccattt |
142 |
Q |
| |
|
|||||||||| ||| |||| ||||| |||||| ||| |||| || ||||| || ||||| || |||||| |||||||||||||||||||||||||| |
|
|
| T |
6053692 |
gtgtttcaatgttaatttggtaggaactttggggaagcgatgtaaagagcagatcaagtattttcggcttccacatgacgccactgatgactatccattt |
6053791 |
T |
|
| Q |
143 |
caa |
145 |
Q |
| |
|
||| |
|
|
| T |
6053792 |
caa |
6053794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 6132488 - 6132443
Alignment:
| Q |
101 |
tatttacgacttccatatgacgccactgatgactatccatttcaag |
146 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
6132488 |
tatttacggcttccatatgatgccactgatgattatccatttcaag |
6132443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University