View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21672_high_43 (Length: 311)

Name: NF21672_high_43
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21672_high_43
NF21672_high_43
[»] chr7 (15 HSPs)
chr7 (1-289)||(23983290-23983579)
chr7 (8-135)||(22567843-22567970)
chr7 (9-121)||(28534243-28534355)
chr7 (66-163)||(36449287-36449383)
chr7 (53-181)||(9427879-9428007)
chr7 (53-281)||(24324557-24324787)
chr7 (108-211)||(9107308-9107410)
chr7 (53-88)||(48058442-48058477)
chr7 (55-93)||(9107408-9107446)
chr7 (53-217)||(31409760-31409925)
chr7 (61-156)||(1321012-1321109)
chr7 (54-284)||(3478440-3478669)
chr7 (249-292)||(36449164-36449207)
chr7 (53-163)||(42533018-42533129)
chr7 (195-281)||(8745244-8745330)
[»] chr2 (28 HSPs)
chr2 (9-289)||(16952098-16952380)
chr2 (9-289)||(17022763-17023045)
chr2 (37-289)||(17060098-17060351)
chr2 (53-307)||(10173339-10173593)
chr2 (99-220)||(20572226-20572346)
chr2 (8-122)||(25504639-25504754)
chr2 (56-135)||(13699066-13699144)
chr2 (55-152)||(27879913-27880011)
chr2 (195-281)||(34230292-34230378)
chr2 (53-281)||(7696053-7696283)
chr2 (53-156)||(12343037-12343139)
chr2 (56-126)||(4974992-4975063)
chr2 (56-126)||(4992900-4992971)
chr2 (8-90)||(24308462-24308550)
chr2 (37-180)||(27740153-27740293)
chr2 (53-150)||(15126186-15126283)
chr2 (53-134)||(22884913-22884991)
chr2 (53-88)||(15360985-15361020)
chr2 (37-180)||(33788393-33788535)
chr2 (53-152)||(2063078-2063174)
chr2 (68-180)||(43816249-43816359)
chr2 (56-156)||(1269698-1269797)
chr2 (209-279)||(41086715-41086785)
chr2 (1-69)||(20572339-20572408)
chr2 (1-37)||(2063177-2063213)
chr2 (58-114)||(37770413-37770469)
chr2 (76-151)||(41086572-41086648)
chr2 (58-110)||(41113502-41113554)
[»] chr1 (23 HSPs)
chr1 (55-289)||(16577344-16577579)
chr1 (41-152)||(38548824-38548934)
chr1 (1-278)||(41126197-41126462)
chr1 (1-152)||(38544462-38544613)
chr1 (66-162)||(16148987-16149083)
chr1 (53-156)||(32882584-32882688)
chr1 (8-135)||(17033810-17033937)
chr1 (53-156)||(34775089-34775193)
chr1 (53-132)||(46603606-46603683)
chr1 (195-281)||(16147649-16147735)
chr1 (53-135)||(42374386-42374467)
chr1 (62-180)||(49820311-49820427)
chr1 (32-80)||(17993861-17993909)
chr1 (38-90)||(37200386-37200438)
chr1 (53-113)||(46768437-46768497)
chr1 (8-101)||(26602562-26602656)
chr1 (53-163)||(10785221-10785330)
chr1 (52-180)||(40934044-40934169)
chr1 (56-94)||(6583014-6583052)
chr1 (195-281)||(6583120-6583206)
chr1 (195-281)||(31290923-31291009)
chr1 (128-156)||(24659146-24659174)
chr1 (73-155)||(31290799-31290880)
[»] chr5 (16 HSPs)
chr5 (4-298)||(17853781-17854073)
chr5 (8-122)||(8731153-8731268)
chr5 (53-228)||(26045723-26045901)
chr5 (53-135)||(39183963-39184044)
chr5 (55-152)||(24072047-24072142)
chr5 (53-163)||(14302203-14302314)
chr5 (53-145)||(33109957-33110050)
chr5 (54-113)||(7682815-7682874)
chr5 (53-107)||(30097600-30097654)
chr5 (53-94)||(7195060-7195101)
chr5 (79-163)||(33258665-33258750)
chr5 (56-153)||(8297694-8297790)
chr5 (57-88)||(22675101-22675132)
chr5 (53-100)||(26405307-26405354)
chr5 (250-298)||(24072226-24072274)
chr5 (107-155)||(39024259-39024306)
[»] chr6 (9 HSPs)
chr6 (53-289)||(32935102-32935337)
chr6 (1-180)||(33968343-33968518)
chr6 (53-119)||(17278261-17278326)
chr6 (53-101)||(15120362-15120410)
chr6 (53-93)||(16180675-16180715)
chr6 (53-88)||(13098347-13098382)
chr6 (198-281)||(20701710-20701793)
chr6 (76-156)||(20701583-20701664)
chr6 (107-215)||(21266263-21266369)
[»] chr4 (14 HSPs)
chr4 (53-211)||(12296322-12296480)
chr4 (56-284)||(19673188-19673420)
chr4 (53-281)||(41117727-41117957)
chr4 (58-163)||(22810925-22811029)
chr4 (39-94)||(43373852-43373907)
chr4 (54-152)||(46487477-46487575)
chr4 (53-284)||(19814978-19815213)
chr4 (53-163)||(49747739-49747849)
chr4 (53-156)||(38636993-38637095)
chr4 (56-163)||(48098546-48098651)
chr4 (69-148)||(20632261-20632339)
chr4 (53-88)||(28967136-28967171)
chr4 (195-281)||(49528163-49528249)
chr4 (56-163)||(19311128-19311236)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-152)||(741-892)
[»] chr3 (21 HSPs)
chr3 (37-180)||(27399140-27399282)
chr3 (1-307)||(823143-823450)
chr3 (37-152)||(25594292-25594406)
chr3 (53-154)||(37123601-37123703)
chr3 (57-126)||(12086489-12086559)
chr3 (39-95)||(1652636-1652692)
chr3 (57-156)||(14194152-14194248)
chr3 (64-120)||(32010016-32010072)
chr3 (138-281)||(39021122-39021267)
chr3 (1-136)||(45354654-45354790)
chr3 (61-214)||(13018094-13018246)
chr3 (104-163)||(14879648-14879708)
chr3 (55-135)||(40689518-40689597)
chr3 (55-152)||(46358167-46358266)
chr3 (195-281)||(25647777-25647863)
chr3 (37-90)||(16266000-16266052)
chr3 (131-176)||(23328188-23328233)
chr3 (41-156)||(25647905-25648017)
chr3 (79-154)||(28937498-28937574)
chr3 (76-155)||(33143733-33143813)
chr3 (57-163)||(50518852-50518956)
[»] chr8 (10 HSPs)
chr8 (1-87)||(25184866-25184953)
chr8 (53-156)||(10248326-10248430)
chr8 (55-197)||(17720486-17720626)
chr8 (8-206)||(15906839-15907037)
chr8 (53-162)||(17656495-17656606)
chr8 (39-94)||(30235877-30235932)
chr8 (42-94)||(41791017-41791069)
chr8 (61-163)||(12197842-12197945)
chr8 (61-163)||(12442270-12442373)
chr8 (195-281)||(17656906-17656992)
[»] scaffold0050 (1 HSPs)
scaffold0050 (57-163)||(36920-37024)
[»] scaffold0499 (1 HSPs)
scaffold0499 (53-88)||(6828-6863)
[»] scaffold0063 (1 HSPs)
scaffold0063 (64-281)||(58218-58439)
[»] scaffold0119 (1 HSPs)
scaffold0119 (56-156)||(41905-42004)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 23983579 - 23983290
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattc 99  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||| ||||    
T  23983579 aagacatccctacacacaacacctagtcataccttaccttcaacacacatgaggacaacacccaccaaaataaacaccaccacctaaaacagactcattc 23983480  T
Q  100 acgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcacca 199  Q
    ||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||    
T  23983479 acgaaaacaaccactgaaaaacgatatacataactacccatcatcactactcaccccaaaagaagaccgctctaaatgaaattctcggtcctcatcatca 23983380  T
Q  200 aagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 289  Q
    ||| ||||||| ||||||||| ||||||||||||| |||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  23983379 aagctgaaccagatccgaaaagctcatattcgaaagatcattcaactgtcaccacctctcaacctccgatacaccgaaagaacacaaaaa 23983290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 22567843 - 22567970
Alignment:
Q  8 ccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaa 106  Q
    |||||||||||| ||||||||| ||||||| |||||||| | ||  ||||||| ||||||||||| ||||||||||||||||||||||  |||||| |||    
T  22567843 ccctacacacaacacctagtcaaaccctaccttcaacacccctagggacaacatccaccaaaatacacatcaccacctaaaacagactctttcacg-aaa 22567941  T
Q  107 cgaccactgaaaaacgatatacataacca 135  Q
    | |||||||||||||| ||| ||||||||    
T  22567942 caaccactgaaaaacggtatccataacca 22567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 28534243 - 28534355
Alignment:
Q  9 cctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaac 107  Q
    ||||||||||| | |||| || ||||||| |||||||| | | | ||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  28534243 cctacacacaacaactagccaaaccctaccttcaacacccctgaggacaacacccaccaaaataaacatcaccacctaaaacagactctttcacg-aaac 28534341  T
Q  108 gaccactgaaaaac 121  Q
    ||||||||||||||    
T  28534342 gaccactgaaaaac 28534355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 36449383 - 36449287
Alignment:
Q  66 aaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 163  Q
    ||||||||||||||||||||||| |||||  |||||| |||| ||| |||||||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  36449383 aaaataaacatcaccacctaaaatagactacttcacg-aaacaaccgctgaaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa 36449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 181
Target Start/End: Original strand, 9427879 - 9428007
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 152  Q
    ||||||||| ||||||||||||||||| |||||||||| | |  |||||| | || |||||| ||||| ||||| ||||||||||| |||||||||||||    
T  9427879 gacaacacctaccaaaataaacatcactacctaaaacaaattctttcacgaagacaaccactaaaaaatgatatccataaccacccgtcgtcactactca 9427978  T
Q  153 ccccgaaagaagaccgctctaaatgaaat 181  Q
     ||| ||| |  | | |||||||||||||    
T  9427979 tccctaaatagcatccctctaaatgaaat 9428007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 281
Target Start/End: Original strand, 24324557 - 24324787
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacg-taaacgaccactg-aaaaacgatatacataaccacccatcgtcactact 150  Q
    |||||||| |||||||||| || ||||||| |||||||||||  ||||||  ||||||||| || || |||||||| |  ||||| ||||||||||||||    
T  24324557 gacaacactcaccaaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatcc--aacca-ccatcgtcactact 24324653  T
Q  151 caccccgaaag---aagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgcta 247  Q
    |||||| ||||   || ||| ||| |||| ||| ||||  |||| | |||||||| ||| ||||| ||||||| ||| ||  ||||| ||||||| |||     
T  24324654 cacccctaaagaaaaacacccctcaaaataaaactctccgtcctgaacaccaaagctgagccacagccgaaaagctcctaaccgaaagatcattcagctt 24324753  T
Q  248 tcaccacctctcaacctccgatacaccgaaagaa 281  Q
     ||||||| ||| ||||||||| |||| ||||||    
T  24324754 ccaccacccctcgacctccgatccacctaaagaa 24324787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 9107410 - 9107308
Alignment:
Q  108 gaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaa 207  Q
    ||||| || |||||||||| ||||||||||||||| ||||||||| ||| ||| ||  || ||||||||||||  | | ||||||||||||||||||||     
T  9107410 gaccattggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgag 9107312  T
Q  208 ccac 211  Q
    ||||    
T  9107311 ccac 9107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 48058442 - 48058477
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaa 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  48058442 gacaacacccaccaaaataaacatcaccacctaaaa 48058477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 9107446 - 9107408
Alignment:
Q  55 caacacccaccaaaataaacatcaccacctaaaacagac 93  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9107446 caacacccaccaaaataagcatcaccacctaaaacagac 9107408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 31409760 - 31409925
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacat-aaccacccatcgtcactact 150  Q
    |||||||||| ||||||||||||||| ||| |||||||||||  ||||   ||||||||| || |||||  |||| ||| ||| |||||| | ||| |||    
T  31409760 gacaacaccctccaaaataaacatcatcacataaaacagactccttca-aaaaacgaccattgaaaaaataatatccataaactacccattgccaccact 31409858  T
Q  151 caccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccga 217  Q
    |||||| |||||| |||  | |||||||||  | ||||| ||  ||||||| |||||||||||||||    
T  31409859 caccccaaaagaacacccgtataaatgaaacacccgatcatccacaccaaaattgaaccacatccga 31409925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 1321109 - 1321012
Alignment:
Q  61 ccaccaaaataaacatcaccacctaaaacagacttatt-cacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 156  Q
    ||||||||||| |||||||||||||||||||||   || |||| || | ||||||| |||||||||||  |  ||||| |||||||||||||||||||    
T  1321109 ccaccaaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatctaataccactcatcgtcactactcacccc 1321012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 284
Target Start/End: Complemental strand, 3478669 - 3478440
Alignment:
Q  54 acaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactca 152  Q
    |||||| ||||||||| | |  |||||| || |||||||| | |||||| | ||||| |||| |||| |||||| ||| |||| || |||||||||||||    
T  3478669 acaacatccaccaaaaaacaagtcaccaactcaaacagacgtcttcacgaatacgac-actgtaaaagcgatatccatcaccaaccgtcgtcactactca 3478571  T
Q  153 ccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcacc 252  Q
    |||| |||||| ||  ||| |||| ||| || |  |||||| |||||||| | | |||  || |||||  ||| || ||||| ||||||| |||  | ||    
T  3478570 cccc-aaagaacactcctcaaaattaaactcccagtcctcaacaccaaagcttagccaactcagaaaagttcacatccgaaagatcattcagcttccgcc 3478472  T
Q  253 acctctcaacctccgatacaccgaaagaacac 284  Q
    ||||||| | ||||||| ||||||||||||||    
T  3478471 acctctcgatctccgatccaccgaaagaacac 3478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 36449207 - 36449164
Alignment:
Q  249 caccacctctcaacctccgatacaccgaaagaacacaaaaataa 292  Q
    ||||||||||||||||||||| ||||||||||| || |||||||    
T  36449207 caccacctctcaacctccgatccaccgaaagaaaaccaaaataa 36449164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 42533018 - 42533129
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    |||||||||||| |||| | || ||| ||||||||||| || |||||||| || | |||| || ||||| || || ||  ||||||||||||||||||||    
T  42533018 gacaacacccacaaaaaaatacgtcatcacctaaaacatacctattcacgaaagcaaccattgtaaaaatgaaatccaataccacccatcgtcactactc 42533117  T
Q  152 accccgaaagaa 163  Q
     |||| ||||||    
T  42533118 gcccccaaagaa 42533129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 8745330 - 8745244
Alignment:
Q  195 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||||||| ||| ||||||||||||| ||| |||  |||| ||||| | |||  ||| ||||||| ||||||||| |||||||||||    
T  8745330 caccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaa 8745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 16952098 - 16952380
Alignment:
Q  9 cctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaac 107  Q
    ||||||||||| ||||||||||  ||||| |||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||   |||||| ||||    
T  16952098 cctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaac 16952196  T
Q  108 gacc-actg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttg 205  Q
     | | |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||    
T  16952197 aaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttg 16952296  T
Q  206 aaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 289  Q
    | ||||||||||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  16952297 atccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 16952380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 289
Target Start/End: Original strand, 17022763 - 17023045
Alignment:
Q  9 cctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaac 107  Q
    ||||||||||| ||||||||||  ||||| |||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||   |||||| ||||    
T  17022763 cctacacacaacacctagtcattgcctaccttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaac 17022861  T
Q  108 gacc-actg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttg 205  Q
     | | |||| ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||    
T  17022862 aaactactgcaaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttg 17022961  T
Q  206 aaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 289  Q
    | ||||||||||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  17022962 atccacatccgaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17023045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 37 - 289
Target Start/End: Original strand, 17060098 - 17060351
Alignment:
Q  37 cttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgacc-actg-aaaaacgatatacataacc 134  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||   |||||| |||| | | |||| ||||| ||||| ||| |||    
T  17060098 cttcaacacccatgacgacaacacccac-aaaataaacatcaccacttaaaacagacgccttcacgaaaacaaactactgcaaaaaagatattcatcacc 17060196  T
Q  135 acccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaa 234  Q
    || ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||||||| ||| ||| |||||    
T  17060197 actcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaa 17060296  T
Q  235 tatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 289  Q
     ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  17060297 gatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 307
Target Start/End: Original strand, 10173339 - 10173593
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||| ||||| ||||||| |  ||||  |||||||||||| | |||| | ||||||| |||| ||||||||||||||  ||||| ||||||||||||||    
T  10173339 gacaatacccatcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactc 10173438  T
Q  152 accccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcac 251  Q
    ||||| |||||| ||  ||| |||| ||| ||||  |||||| |||||||| ||| ||||||||||||| ||||||||| ||| |||||||  ||  |||    
T  10173439 acccc-aaagaatactcctcaaaattaaactctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccac 10173537  T
Q  252 cacctctcaacctccgatacaccgaaagaacacaaaaataaccccaacaccaaact 307  Q
    |||||||| ||||||||| |||||||||||||| || | || ||||| ||||||||    
T  10173538 cacctctcgacctccgattcaccgaaagaacaccaacaaaagcccaaaaccaaact 10173593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 220
Target Start/End: Complemental strand, 20572346 - 20572226
Alignment:
Q  99 cacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcacc 198  Q
    |||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||| | |||||| ||| |||||||||||| ||||  ||||||||||     
T  20572346 cacgaaaacgaccactgaaaaacgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcact 20572248  T
Q  199 aaagttgaaccacatccgaaaa 220  Q
    |||| | ||||| |||||||||    
T  20572247 aaagctaaaccatatccgaaaa 20572226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 25504639 - 25504754
Alignment:
Q  8 ccctacacacaatacctagtcataccctac-ttcaacacacataacgacaa-cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaa 105  Q
    |||||||||||| ||||||||| |||| || |||||||| | | | ||||| ||||||||||||||||||||||||||||||||||| |  |||||| ||    
T  25504639 ccctacacacaacacctagtcaaaccccaccttcaacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacagagtctttcacg-aa 25504737  T
Q  106 acgaccactgaaaaacg 122  Q
    |||||||||||||||||    
T  25504738 acgaccactgaaaaacg 25504754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 13699066 - 13699144
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 135  Q
    ||||||||||||||||||||||||||||||||||| |||  || ||| ||||||||||||||||||| ||||||||||||    
T  13699066 aacacccaccaaaataaacatcaccacctaaaacacactcttttacg-aaacgaccactgaaaaacggtatacataacca 13699144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 27879913 - 27880011
Alignment:
Q  55 caacacccaccaaaa-taaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 152  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||| | |||||||| ||||||||||| || ||||||||| ||||  |||||||||    
T  27879913 caacacccaccaaaaataaacatcaccacctaaaacagactccttcaggaaaacgacctctgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 34230378 - 34230292
Alignment:
Q  195 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||||||||||| ||||||| ||||| ||| |||| |||| ||||||| |||  ||||||||||||||||||||| |||||||||||    
T  34230378 caccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa 34230292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 281
Target Start/End: Complemental strand, 7696283 - 7696053
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||| |||||||||||||||| | |||  |||||| ||||||||| || ||||| ||||| |  |||||| ||||||||||||||    
T  7696283 gacaacacccaccaaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatattc--aaccactcatcgtcactactc 7696186  T
Q  152 acccc----gaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgcta 247  Q
    || ||    |||| || ||| ||  |||| ||| ||  | |||| | |||||||||||| ||||||||  ||| ||| ||| ||||| ||||||| |||     
T  7696185 actcccttagaaa-aacacccctaaaaataaaactcctggtcctgaacaccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagctt 7696087  T
Q  248 tcaccacctctcaacctccgatacaccgaaagaa 281  Q
     ||||||||| | |||| |||| |||||||||||    
T  7696086 ccaccacctcccgaccttcgatccaccgaaagaa 7696053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 12343139 - 12343037
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||| ||| ||||||| || |||||||||||||||||||  |||||| |||||||| ||| ||||||||||| |  |||||| ||||||||||||||    
T  12343139 gacaacatccatcaaaatacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcc--aaccactcatcgtcactactc 12343042  T
Q  152 acccc 156  Q
    |||||    
T  12343041 acccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 4975063 - 4974992
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 126  Q
    ||||||||||||| || ||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  4975063 aacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4974992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 4992971 - 4992900
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 126  Q
    ||||||||||||| || ||| ||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  4992971 aacacccaccaaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4992900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 24308462 - 24308550
Alignment:
Q  8 ccctacacacaatacctagtcataccctactt-caacacacata-----acgacaacacccaccaaaataaacatcaccacctaaaaca 90  Q
    ||||||||| |||||||||||| ||||||||| |||||| |||      |||||||||||||||||||||||||||| |||||||||||    
T  24308462 ccctacacagaatacctagtcaaaccctactttcaacactcatctgatgacgacaacacccaccaaaataaacatcatcacctaaaaca 24308550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 27740293 - 27740153
Alignment:
Q  37 cttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccac 136  Q
    ||||||||| ||| | |||||| |||| ||||||||||  |||||||||| ||| |||  |||||| |||| ||||||||| |||||||| |||||||||    
T  27740293 cttcaacacccatgaggacaacgcccatcaaaataaac--caccacctaatacaaactccttcacg-aaactaccactgaagaacgatattcataaccac 27740197  T
Q  137 ccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 180  Q
     | ||| ||||||||| |||  || || ||| ||||||||||||    
T  27740196 tcgtcgccactactcatcccagaataacacccctctaaatgaaa 27740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 15126186 - 15126283
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacct-aaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactact 150  Q
    ||||| |||||||||||||||||||||||||| |||||| |||  |||||| |||| ||| || |||||| | || ||||||||||||||| |||||||    
T  15126186 gacaatacccaccaaaataaacatcaccacctaaaaacaaactcgttcacg-aaaccacccctaaaaaacaaaatccataaccacccatcgccactact 15126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 134
Target Start/End: Original strand, 22884913 - 22884991
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacc 134  Q
    |||||||||||| ||||  |||||||||||||||||||||||  |||||| ||||||||||||| |||||| || |||||||    
T  22884913 gacaacacccactaaaa--aacatcaccacctaaaacagactccttcacg-aaacgaccactgacaaacgaaatccataacc 22884991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 15361020 - 15360985
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaa 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  15361020 gacaacacccaccaaaataaacatcaccacctaaaa 15360985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 33788393 - 33788535
Alignment:
Q  37 cttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccac 136  Q
    ||||||||| ||| |  ||||||||||| |||||||||||  ||||||||||||| ||  | |||| |||| |||||||| |||| | || |||||||||    
T  33788393 cttcaacacccatgagtacaacacccactaaaataaacattgccacctaaaacaggctcctccacg-aaacaaccactgacaaacaaaatccataaccac 33788491  T
Q  137 ccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 180  Q
    |  ||| ||||||||  ||| ||| || ||| ||||||||||||    
T  33788492 ctgtcgccactactcgtcccaaaataacacccctctaaatgaaa 33788535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 2063174 - 2063078
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    |||||||||| |||||||||||||||||||||||||   |||  |||| | |||||||||||| ||||||||||| ||||||||  ||| | ||||||||    
T  2063174 gacaacacccgccaaaataaacatcaccacctaaaa---actccttcaag-aaacgaccactgaaaaaacgatatccataaccatacattgccactactc 2063079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 180
Target Start/End: Original strand, 43816249 - 43816359
Alignment:
Q  68 aataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagacc 167  Q
    ||||||||||||||||||||| |||||  |||||| |||| |||||||||||||| ||| ||||  ||  ||||| ||||||||  ||||||| || ||     
T  43816249 aataaacatcaccacctaaaatagactctttcacg-aaacaaccactgaaaaacggtatccatacaca-gcatcgccactactcctcccgaaaaaacact 43816346  T
Q  168 gctctaaatgaaa 180  Q
     ||||||||||||    
T  43816347 cctctaaatgaaa 43816359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 156
Target Start/End: Complemental strand, 1269797 - 1269698
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccact-gaaaaacgatatacataaccacccatcgtcactactcacc 154  Q
    ||||||||  |||||| |||||||||||||||||| | |  ||| || |||||||| ||  ||||||||||| |  ||||||||||||||||||||| ||    
T  1269797 aacacccataaaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatcc--aaccacccatcgtcactactcgcc 1269700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 41086715 - 41086785
Alignment:
Q  209 cacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 279  Q
    ||||||| |||| ||| ||| ||||| ||||||| |||  ||||||||||| ||||||||| |||||||||    
T  41086715 cacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaag 41086785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 20572408 - 20572339
Alignment:
Q  1 aagacatccctacacacaatacctagtcatacccta-cttcaacacacataacgacaacacccaccaaaa 69  Q
    |||||| |||||||||||| || || |||||||||| ||||||||| ||| | |||||||||||| ||||    
T  20572408 aagacacccctacacacaacacttactcataccctaccttcaacacccatgaggacaacacccacgaaaa 20572339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2063213 - 2063177
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac 37  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  2063213 aagacatccctacacacaacacctagtcaaaccctac 2063177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 37770413 - 37770469
Alignment:
Q  58 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccact 114  Q
    |||||||||||||  || |||||||||||||||||||  |||||| |||| ||||||    
T  37770413 cacccaccaaaatccacgtcaccacctaaaacagactccttcacgaaaaccaccact 37770469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 151
Target Start/End: Original strand, 41086572 - 41086648
Alignment:
Q  76 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||   || ||| || ||||||||  ||||||||||| ||  ||||||||||||||||||||    
T  41086572 tcaccacctaaaacagaccccttaacgaaagcgaccactctaaaaacgatatccaataccacccatcgtcactactc 41086648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 41113502 - 41113554
Alignment:
Q  58 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgac 110  Q
    ||||||||||||||||| | || ||||||||||||||  |||||| |||||||    
T  41113502 cacccaccaaaataaacgttactacctaaaacagactccttcacgaaaacgac 41113554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 55 - 289
Target Start/End: Complemental strand, 16577579 - 16577344
Alignment:
Q  55 caacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcac 153  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||| |||||  ||||| ||||||||  ||||||| ||||||||    
T  16577579 caacacccaccaaaataaacatcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcac 16577480  T
Q  154 cccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcacca 253  Q
     || |||||| ||| ||||||| |||| | ||  ||  ||||||||||||||| ||||||||||||| ||| ||||| ||| ||||||| |||  |||||    
T  16577479 tccaaaagaacacccctctaaaagaaactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccacca 16577380  T
Q  254 cctctcaacctccgatacaccgaaagaacacaaaaa 289  Q
    ||||||||||||| ||  ||||||||||| ||||||    
T  16577379 cctctcaacctccaatctaccgaaagaacgcaaaaa 16577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 38548824 - 38548934
Alignment:
Q  41 aacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccat 140  Q
    ||||| ||||| | ||||| ||||||||||||||||||||||||||||||||||  |||||| |||||| |||||||||||||||| |||||||||||||    
T  38548824 aacactcataagggcaacatccaccaaaataaacatcaccacctaaaacagactctttcacg-aaacgatcactgaaaaacgatattcataaccacccat 38548922  T
Q  141 cgtcactactca 152  Q
    ||||||||||||    
T  38548923 cgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 41126197 - 41126462
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattc 99  Q
    |||||| |||||||||||| || ||| |||||||||| |||||||| ||  | ||||||||| || |||||| | |||||||||||||||||||  ||||    
T  41126197 aagacacccctacacacaacacatagccataccctaccttcaacacccaagaggacaacacctac-aaaatacatatcaccacctaaaacagacgcattc 41126295  T
Q  100 acgtaaacga-ccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcacc 198  Q
    ||| |||| | |||||| |||||||||| ||| ||||||||||||||||||||||||             |||||||||||| ||||  |||||||||||    
T  41126296 acgaaaacaaaccactgtaaaacgatatccatcaccacccatcgtcactactcaccc-------------ctctaaatgaaactctcagtcctcatcacc 41126382  T
Q  199 aaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaa 278  Q
    |||||||| ||||||| ||||| ||| ||| | ||| ||| ||| |||  || ||||||||||||||| || ||||||||    
T  41126383 aaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctcaacctccaatccaccgaaa 41126462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 38544462 - 38544613
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattc 99  Q
    ||||||||||||||||||| |||||| || | | ||| |||||||| ||| | |||||||  |||||||||||||||||||||||||||||||||  |||    
T  38544462 aagacatccctacacacaacacctagccaaatcgtaccttcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttc 38544561  T
Q  100 acgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 152  Q
    |||  || || ||||| |||||||||| ||||||||| |||||||||||||||    
T  38544562 acg-gaatgatcactggaaaacgatatccataaccactcatcgtcactactca 38544613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 16149083 - 16148987
Alignment:
Q  66 aaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 162  Q
    |||||| || ||||||||||||||||||   |||| ||||||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  16149083 aaaatacacgtcaccacctaaaacagacaccttcatgtaaacgactactgaaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 32882688 - 32882584
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||| |||||||| |||||||| ||||  |||||| |||||| ||||| ||| ||||||| ||  ||||||||||||||||||||    
T  32882688 gacaacacccaccaaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactc 32882589  T
Q  152 acccc 156  Q
    |||||    
T  32882588 acccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 17033937 - 17033810
Alignment:
Q  8 ccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaa 106  Q
    |||||||||||| | ||||||| ||||||| |||||||| | |   ||||||| |||| ||||||||||| ||||||||||||| |||  |||||| |||    
T  17033937 ccctacacacaacaactagtcaaaccctaccttcaacacccctggggacaacatccacgaaaataaacattaccacctaaaacatactctttcacg-aaa 17033839  T
Q  107 cgaccactgaaaaacgatatacataacca 135  Q
    |||||||| ||||||| ||||||||||||    
T  17033838 cgaccacttaaaaacggtatacataacca 17033810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 156
Target Start/End: Complemental strand, 34775193 - 34775089
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||| || ||| |||||||||||||||  |||||| ||||||| |||| |||||||| || |   || |||| ||||||||||||    
T  34775193 gacaacacccaccaaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgtaaaaacgaaatcccacactacccgtcgtcactactc 34775094  T
Q  152 acccc 156  Q
    |||||    
T  34775093 acccc 34775089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 46603683 - 46603606
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataa 132  Q
    ||||||||||||||||||||| ||||||| ||||||||||||| |||||| |||||||||||| || ||| ||| |||||    
T  46603683 gacaacacccaccaaaataaa-atcaccatctaaaacagacttcttcacg-aaacgaccactggaacacgttatccataa 46603606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 16147735 - 16147649
Alignment:
Q  195 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||||||| ||| ||||||||||||| |||||||  |||| |||||||  || |||||||||||| |||||||||  ||||||||||    
T  16147735 caccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaa 16147649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 135
Target Start/End: Complemental strand, 42374467 - 42374386
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 135  Q
    |||||| |||||||| |||||||||||||||||||||| | |  |||||| ||||||||||||||||||  ||| ||||||||    
T  42374467 gacaacccccaccaagataaacatcaccacctaaaacaaattccttcacg-aaacgaccactgaaaaactgtatccataacca 42374386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 49820427 - 49820311
Alignment:
Q  62 caccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaag 161  Q
    ||||||||||||||||||||||||||| |||||  || | | |||||| |||||||||||||||| ||||||||||| ||| ||| || || ||| |||     
T  49820427 caccaaaataaacatcaccacctaaaaaagactcctt-atg-aaacgagcactgaaaaacgatatccataaccacccgtcgccaccacacatcccaaaat 49820330  T
Q  162 aagaccgctctaaatgaaa 180  Q
    |  ||| ||||||||||||    
T  49820329 atcacccctctaaatgaaa 49820311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 17993861 - 17993909
Alignment:
Q  32 ccctacttcaacacacataacgacaacacccaccaaaataaacatcacc 80  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  17993861 ccctacgtcaacacccataaggacaacacccaccaaaataaacatcacc 17993909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 37200438 - 37200386
Alignment:
Q  38 ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaaca 90  Q
    |||||||| ||| | |||||||||||| |||||||||||||||||||||||||    
T  37200438 ttcaacactcatgaggacaacacccactaaaataaacatcaccacctaaaaca 37200386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 46768497 - 46768437
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccac 113  Q
    ||||||||||||||||||  || |||||||||||||||||||  |||||| ||||||||||    
T  46768497 gacaacacccaccaaaattcacgtcaccacctaaaacagactccttcacgaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 26602562 - 26602656
Alignment:
Q  8 ccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcac 101  Q
    |||||||||||| |||||| || ||||||| |||||||  |   | |||||||||||  ||||||||||||||||||||| ||||||| ||||||    
T  26602562 ccctacacacaacacctagccaaaccctaccttcaacaaccccgaggacaacacccatgaaaataaacatcaccacctaacacagactcattcac 26602656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 10785221 - 10785330
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||| ||||||| |  | | ||| |||||||||||  |||||| |||||||  |||||||| |||||| ||  ||||||||||||||||||||    
T  10785221 gacaacacccatcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatcca--accacccatcgtcactactc 10785318  T
Q  152 accccgaaagaa 163  Q
    | |||| |||||    
T  10785319 atcccgcaagaa 10785330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 40934169 - 40934044
Alignment:
Q  52 cgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacat-aaccacccatcgtcactact 150  Q
    ||||||||| |||||||||||||||   ||||||||| |||||  |||||| ||| || || ||||||||||||| ||| |||||| ||||  |||||||    
T  40934169 cgacaacacacaccaaaataaacat---cacctaaaagagactccttcacg-aaatgatcattgaaaaacgatatccataaaccacacatcaccactact 40934074  T
Q  151 caccccgaaagaagaccgctctaaatgaaa 180  Q
     ||| | |||||| |||  |||||||||||    
T  40934073 tacctcaaaagaacacccgtctaaatgaaa 40934044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 6583014 - 6583052
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagact 94  Q
    |||||||||||||||| || |||||||||||||||||||    
T  6583014 aacacccaccaaaatacacgtcaccacctaaaacagact 6583052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 6583120 - 6583206
Alignment:
Q  195 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||||||| ||| || |||||||||| ||| |||  |||| |||| || |||  ||||||||||| ||||||||| |||||||||||    
T  6583120 caccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaa 6583206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 31290923 - 31291009
Alignment:
Q  195 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||||||| ||| ||||||||||||| ||| ||| ||||| ||||  |  ||  ||||||||||| ||||||||| |||||||||||    
T  31290923 caccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcgacctccgatccaccgaaagaa 31291009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 156
Target Start/End: Complemental strand, 24659174 - 24659146
Alignment:
Q  128 cataaccacccatcgtcactactcacccc 156  Q
    |||||||||||||||||||||||||||||    
T  24659174 cataaccacccatcgtcactactcacccc 24659146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 31290799 - 31290880
Alignment:
Q  73 acatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccc 155  Q
    ||||||||||||||| ||||||  ||| || |||||||||||| ||||| ||||  |  ||||| |||||||||||||||||||    
T  31290799 acatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagcc--aaccatccatcgtcactactcaccc 31290880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 17853781 - 17854073
Alignment:
Q  4 acatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacg 102  Q
    |||||| ||| ||||| |||||| || ||||||| |||| ||| ||| | || |||||||||||||||||||||||||  ||||||||||||  || |||    
T  17853781 acatccatactcacaacacctagccaaaccctaccttcaccacccatgaggaaaacacccaccaaaataaacatcaccttctaaaacagactcctttacg 17853880  T
Q  103 taaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaag 202  Q
     |||||| |||||||||||||||| ||||||||||||||  ||||||||||||| |||| ||||  ||||||||||||  | | ||||||||||||| ||    
T  17853881 -aaacgatcactgaaaaacgatatccataaccacccatcaccactactcaccccaaaagtagacacctctaaatgaaacac-caatcctcatcaccatag 17853978  T
Q  203 ttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 298  Q
     ||| |||||||||||||  |||||||| ||| |||||||  ||  |||||||||||||| || | | |||||||||||||  ||||||| |||||    
T  17853979 ctgagccacatccgaaaa-gtcatattctaaagatcattcaacttccaccacctctcaacttcaggtccaccgaaagaacattaaaataagcccaa 17854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 8731268 - 8731153
Alignment:
Q  8 ccctacacacaatacctagtcataccctac-ttcaacacacataacgacaa-cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaa 105  Q
    |||||||||||| ||||||||| |||| || |||||||| | | | ||||| ||||||||||||||||||||||||||||||||||| |  |||||| ||    
T  8731268 ccctacacacaacacctagtcaaaccccaccttcaacacccctgatgacaaacacccaccaaaataaacatcaccacctaaaacagagtctttcacg-aa 8731170  T
Q  106 acgaccactgaaaaacg 122  Q
    |||||||||||||||||    
T  8731169 acgaccactgaaaaacg 8731153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 53 - 228
Target Start/End: Original strand, 26045723 - 26045901
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||  || |||||||||||||||||||| |||| | ||| |||||| | |||||||| || ||  ||| ||||||||||||||||    
T  26045723 gacaacacccaccaaaattcacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactc 26045822  T
Q  152 accccga--aagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatat 228  Q
    ||||| |  || || ||| ||| |||| ||| |||| ||||| | ||||||||||||  ||| |||||||| |||||||    
T  26045823 accccaaagaaaaacacccctcaaaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatat 26045901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 39183963 - 39184044
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 135  Q
    |||||||||||| |||||||| ||||||||||||||||||||   ||||| ||||||||||||||||||| ||| ||||||||    
T  39183963 gacaacacccactaaaataaagatcaccacctaaaacagactctatcacg-aaacgaccactgaaaaacggtatccataacca 39184044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 24072047 - 24072142
Alignment:
Q  55 caacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 152  Q
    |||||||||||||||||||||||||||| |||||||| | |  ||||| ||||||||||| |||||||||||  || | |||||||||||||||||||    
T  24072047 caacacccaccaaaataaacatcaccacataaaacagtc-tcctcacg-aaacgaccactaaaaaacgatatctatgatcacccatcgtcactactca 24072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 14302203 - 14302314
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||| || ||||||||||||||||| |  ||| || ||||||||| || ||||||||||| ||  ||||||  ||||||||||||    
T  14302203 gacaacacccaccaaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactc 14302302  T
Q  152 accccgaaagaa 163  Q
    | ||| ||||||    
T  14302303 atccccaaagaa 14302314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 33109957 - 33110050
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtca 145  Q
    ||||||||||||||||||| || ||| ||||||||||| ||   |||||| |||||||||||| ||||||||||| ||  ||||||||||||||    
T  33109957 gacaacacccaccaaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaataccacccatcgtca 33110050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 7682874 - 7682815
Alignment:
Q  54 acaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccac 113  Q
    |||||||||||||||||| |||||||||||||||| |||||  |||||  ||||||||||    
T  7682874 acaacacccaccaaaatacacatcaccacctaaaatagactctttcacaaaaacgaccac 7682815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 30097654 - 30097600
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaac 107  Q
    ||||||||||||||||||| || |||||||||||||||||||  |||||| ||||    
T  30097654 gacaacacccaccaaaatacacgtcaccacctaaaacagactccttcacgaaaac 30097600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 7195060 - 7195101
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagact 94  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  7195060 gacaacacccaccaaaatacacgtcaccacctaaaacagact 7195101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 33258665 - 33258750
Alignment:
Q  79 ccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 163  Q
    ||||||||||||||  | |||||| || ||||||||| ||||||||||| ||  |||| |||||| ||||||||||||| ||||||    
T  33258665 ccacctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaa 33258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 8297790 - 8297694
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcac 153  Q
    |||| ||||||||||| |||||||||||||||||| |||  |||| | ||| ||||| || ||||||||| | |  ||||||| |||||||||||||||    
T  8297790 aacatccaccaaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttcc--aaccacctatcgtcactactcac 8297694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 88
Target Start/End: Original strand, 22675101 - 22675132
Alignment:
Q  57 acacccaccaaaataaacatcaccacctaaaa 88  Q
    ||||||||||||||||||||||||||||||||    
T  22675101 acacccaccaaaataaacatcaccacctaaaa 22675132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 26405307 - 26405354
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattca 100  Q
    ||||||| ||||||||||| || |||||||||||||||||||| ||||    
T  26405307 gacaacaaccaccaaaatacacgtcaccacctaaaacagacttcttca 26405354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 24072226 - 24072274
Alignment:
Q  250 accacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 298  Q
    ||||||| |||||||||| | |||||||||||||| |||| ||||||||    
T  24072226 accacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaa 24072274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 39024259 - 39024306
Alignment:
Q  107 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccc 155  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  39024259 cgaccattgaaaaacgatatccataa-cactcatcgtcactactcaccc 39024306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 53 - 289
Target Start/End: Original strand, 32935102 - 32935337
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 152  Q
    ||||||||||||||||||||||| |||||||||||| |||||  || ||| ||||| || || |||||||||||||||||||||||||| |||||||| |    
T  32935102 gacaacacccaccaaaataaacaccaccacctaaaatagactccttaacgaaaacgccccctcaaaaacgatatacataaccacccatcatcactactga 32935201  T
Q  153 ccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcacc 252  Q
    |||| ||| || | | |||||||||||| || |  | ||||||||||||| |||   ||||||||||| ||||| ||||||| ||||| | |||  ||||    
T  32935202 cccc-aaaaaacatccctctaaatgaaactcacagtgctcatcaccaaagctgagttacatccgaaaaactcatgttcgaaagatcatgcagcttccacc 32935300  T
Q  253 acctctcaacctccgatacaccgaaagaacacaaaaa 289  Q
    ||||| ||||||  ||  |||||||||||||| ||||    
T  32935301 acctcccaacctttgaaccaccgaaagaacactaaaa 32935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 33968343 - 33968518
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattc 99  Q
    |||||| |||||||||||  |||||| || ||||||| |||||||| | | | ||||||||||||||||||| ||||   |||||||||||||||  ||     
T  33968343 aagacacccctacacacatcacctagccaaaccctaccttcaacacccttgaggacaacacccaccaaaatagacat---cacctaaaacagactctttt 33968439  T
Q  100 acgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 180  Q
    ||  ||||||||||||||||| | ||| ||||||||  |||| |||||||||| ||| ||| || ||| ||||||||||||    
T  33968440 ac-aaaacgaccactgaaaaatggtatccataacca-gcatcatcactactcatcccaaaataacacccctctaaatgaaa 33968518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 17278261 - 17278326
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaa 119  Q
    |||||||||||||||||||||||| |||||||||| ||||||  |||||| |||||| |||||||||    
T  17278261 gacaacacccaccaaaataaacattaccacctaaatcagactccttcacg-aaacgaacactgaaaa 17278326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 15120362 - 15120410
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcac 101  Q
    ||||||| ||||||||||| |||||||||||||||||||||| ||||||    
T  15120362 gacaacatccaccaaaatacacatcaccacctaaaacagactcattcac 15120410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 16180675 - 16180715
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagac 93  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  16180675 gacaacatccaccaaaataaacatcaccacctaaaacagac 16180715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 88
Target Start/End: Original strand, 13098347 - 13098382
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaa 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  13098347 gacaacacccaccaaaataaacatcaccacctaaaa 13098382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 281
Target Start/End: Original strand, 20701710 - 20701793
Alignment:
Q  198 caaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    ||||||||| |||||| |||||| ||| ||| ||||| ||||||| |||  ||| ||||||| ||||||||| |||||||||||    
T  20701710 caaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa 20701793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 20701583 - 20701664
Alignment:
Q  76 tcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 156  Q
    |||||||||| |||||||  ||||||| || | ||||||| ||||||||||| ||  || ||||||||||||||||||||||    
T  20701583 tcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcacccc 20701664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 215
Target Start/End: Complemental strand, 21266369 - 21266263
Alignment:
Q  107 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 206  Q
    ||||||||||||||||| || || ||| ||| |||||||||||||||||| || ||| |||| | |||| ||||  ||| ||||||| |||||||  |||    
T  21266369 cgaccactgaaaaacgacatccagaacaacc-atcgtcactactcaccccaaaggaacaccgttgtaaaagaaa-actcaatcctcaacaccaaaactga 21266272  T
Q  207 accacatcc 215  Q
     ||||||||    
T  21266271 gccacatcc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 12296480 - 12296322
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaa-cagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactc 151  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||  || || |||||||||||||||||||| ||||||||||||||| ||||||||    
T  12296480 gacaacacccaccaaaataaacatcaccacctaaaaacagactcctttccg-aagcgaccactgaaaaacgatatccataaccacccatcgccactactc 12296382  T
Q  152 accccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccac 211  Q
    | ||| ||| || ||| ||||||||||||  |||  ||||||||||| ||||||| ||||    
T  12296381 atcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttgagccac 12296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 56 - 284
Target Start/End: Complemental strand, 19673420 - 19673188
Alignment:
Q  56 aacacccaccaaaataaacatcacca---cctaaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactc 151  Q
    |||||||||||||| | || ||||||   ||| |||||||| | |||||| ||| |||||||| |||| | |||| ||  |||| || ||||||||||||    
T  19673420 aacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactc 19673321  T
Q  152 accccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcac 251  Q
    ||||| |||||| ||  ||| |||| ||| ||||  |||||| |||||||||| | |||||||||||||  |||||| | ||||||||||  |||  |||    
T  19673320 acccccaaagaacactcctcaaaattaaactctcagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccac 19673221  T
Q  252 cacctctcaacctccgatacaccgaaagaacac 284  Q
    || || || |||  |||| ||||||||||||||    
T  19673220 catctatcgaccgtcgatccaccgaaagaacac 19673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 281
Target Start/End: Original strand, 41117727 - 41117957
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||| | ||||||||||| |||||||| || |||| |||| |||  || ||||||||||| |  ||||||||||||||| |||||    
T  41117727 gacaacacccaccaaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatcc--aaccacccatcgtcattactc 41117824  T
Q  152 acccc----gaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgcta 247  Q
    |||||    |||| || ||| |||  ||| ||| || ||||| | | |||||||  ||| |||| |||| ||| ||| ||||||||| ||||||| |||     
T  41117825 acccctttagaaa-aacacccctcagaataaaactcccgatcatgaacaccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagctt 41117923  T
Q  248 tcaccacctctcaacctccgatacaccgaaagaa 281  Q
     ||||||||||| ||||| ||| || ||||||||    
T  41117924 ccaccacctctcgacctctgatccatcgaaagaa 41117957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 58 - 163
Target Start/End: Original strand, 22810925 - 22811029
Alignment:
Q  58 cacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 156  Q
    |||||||||||||| || ||||| |||||||||||||  |||||| || ||||||||| ||||||||||| |   |||| ||||||||||||||||||||    
T  22810925 cacccaccaaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcc--taccatccatcgtcactactcacccc 22811022  T
Q  157 gaaagaa 163  Q
     ||||||    
T  22811023 caaagaa 22811029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 43373852 - 43373907
Alignment:
Q  39 tcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagact 94  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||    
T  43373852 tcaacacacataaggacaacacccaccaaaataaacatcaccccctaaaactgact 43373907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 46487575 - 46487477
Alignment:
Q  54 acaacacccaccaaaataaacatcaccacctaaaa-cagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 152  Q
    |||| |||||||||||||||||||||| ||||||| ||||||  |||| | || |||||||||||||||||||| |||||||||  |||| |||||||||    
T  46487575 acaatacccaccaaaataaacatcacctcctaaaaacagactccttcatg-aagcgaccactgaaaaacgatattcataaccacatatcgccactactca 46487477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 284
Target Start/End: Original strand, 19814978 - 19815213
Alignment:
Q  53 gacaacacccaccaaaataaacatcacca---cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcacta 148  Q
    ||||||||||||||||| | || ||||||   ||| |||||||| | |||||| ||| |||||| | ||||| ||||| ||  |||| || | |||||||    
T  19814978 gacaacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcacta 19815077  T
Q  149 ctcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctat 248  Q
    |||||||| |||||| ||  ||| | || ||| ||||  |||||| |||||||||| | ||||||| |||||  || ||| ||||| ||||||  |||      
T  19815078 ctcacccccaaagaacacttctcaagattaaactctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttc 19815177  T
Q  249 caccacctctcaacctccgatacaccgaaagaacac 284  Q
    ||||| ||||| ||||||| | ||||||||||||||    
T  19815178 caccatctctcgacctccggtccaccgaaagaacac 19815213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 49747849 - 49747739
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||  |  |||||||||||||||||||  |||||| ||||||||| || |||||||| || ||  ||| ||||| ||||||||||    
T  49747849 gacaacacccaccaaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgtaaaaacga-atccaacaccgcccattgtcactactc 49747751  T
Q  152 accccgaaagaa 163  Q
    ||||| ||||||    
T  49747750 acccctaaagaa 49747739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 38636993 - 38637095
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    |||||||||||| |||||| |  ||||||||||||||| |||  |||||| |||| ||| ||| ||||| ||||| ||  ||||||||||||||||||||    
T  38636993 gacaacacccacgaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatcca--accacccatcgtcactactc 38637090  T
Q  152 acccc 156  Q
    |||||    
T  38637091 acccc 38637095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 163
Target Start/End: Complemental strand, 48098651 - 48098546
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacc 154  Q
    ||||||||||||| || || |||||||||||||||  |||  ||||  |||||||||||| ||||||||||| ||| || |||| |||||||||||||||    
T  48098651 aacacccaccaaa-tacacgtcaccacctaaaacactctt--tcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacc 48098555  T
Q  155 ccgaaagaa 163  Q
    || ||||||    
T  48098554 cccaaagaa 48098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 20632261 - 20632339
Alignment:
Q  69 ataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcacta 148  Q
    |||||||||||| |||||||||||||  |||||  |||| ||||||||| ||||||| |||||||||||| ||| |||||    
T  20632261 ataaacatcaccccctaaaacagactctttcaca-aaacaaccactgaagaacgatacacataaccacccgtcgccacta 20632339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 28967171 - 28967136
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaa 88  Q
    ||||||||||||||||||||||||| ||||||||||    
T  28967171 gacaacacccaccaaaataaacatcgccacctaaaa 28967136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 49528249 - 49528163
Alignment:
Q  195 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||||||| ||||||||||||| ||| ||  ||| ||||| |||||||  ||  ||||||||| | ||||||||| |||||||||||    
T  49528249 caccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctcccgacctccgatccaccgaaagaa 49528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 19311128 - 19311236
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacc 154  Q
    |||||||||||||||| || ||||||||  ||||||| |  |||||| |||||| ||||| ||||||||||| ||  | |  ||| ||||||| ||||||    
T  19311128 aacacccaccaaaatacacgtcaccaccataaacagattccttcacgaaaacgagcactgtaaaaacgatatccaacatcctccaccgtcactgctcacc 19311227  T
Q  155 ccgaaagaa 163  Q
    || ||||||    
T  19311228 cccaaagaa 19311236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 741 - 892
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattc 99  Q
    ||||||||||||||||||| |||||| || | | ||| |||||||| ||| | |||||||  |||||||||||||||||||||||||||||||||  |||    
T  741 aagacatccctacacacaacacctagccaaatcgtaccttcaacacccatgaggacaacatacaccaaaataaacatcaccacctaaaacagactctttc 840  T
Q  100 acgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 152  Q
    |||  || || ||||| |||||||||| ||||||||| |||||||||||||||    
T  841 acg-gaatgatcactggaaaacgatatccataaccactcatcgtcactactca 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 27399282 - 27399140
Alignment:
Q  37 cttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacat-aacca 135  Q
    ||||||||| ||| | |||||||||||||||||||||||||| |||||||||||| ||  ||||||  ||||||||||| ||||||||||  || |||||    
T  27399282 cttcaacacccatgaggacaacacccaccaaaataaacatcatcacctaaaacaggctccttcacg-caacgaccactg-aaaacgatatctataaacca 27399185  T
Q  136 cccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 180  Q
    ||||| | ||||||||| ||| |||||| |||  |||||||||||    
T  27399184 cccattgccactactcagcccaaaagaacacccgtctaaatgaaa 27399140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 823143 - 823450
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattc 99  Q
    |||||| || |||||||||  |||| |||  |||||| |||||||| ||| | |||| ||||||||||||| ||| ||||||||||||||| |||   ||    
T  823143 aagacacccttacacacaacccctaatcaacccctaccttcaacacccatgaggacatcacccaccaaaattaacttcaccacctaaaacaaactccatc 823242  T
Q  100 acgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaag-aagaccgctctaaatgaaattctcgatcctcatcacc 198  Q
    ||  |||| |||||||||||||||||| ||||||||||| ||| | ||||||||||  |||| || ||| |||||| | |||  |    |||| || |||    
T  823243 aca-aaacaaccactgaaaaacgatatccataaccacccttcgcctctactcaccctaaaagaaacacctctctaattcaaacaccatgtccttattacc 823341  T
Q  199 aaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 298  Q
    | | |||| ||||||| |||||  || ||||  ||| ||||||| |||  | ||||||||||||||| | |  ||||||||||||| ||||||| |||||    
T  823342 ataattgagccacatctgaaaatgtcctattgaaaagatcattcagcttccgccacctctcaacctctggtctaccgaaagaacaccaaaataagcccaa 823441  T
Q  299 caccaaact 307  Q
     || |||||    
T  823442 aacaaaact 823450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 25594292 - 25594406
Alignment:
Q  37 cttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataacca 135  Q
    ||||||||| ||| | |||||||||||||| |||||||||||| |||||||||| |||  |||||  |||||||||||| ||||||||||| || |||||    
T  25594292 cttcaacacccatgaggacaacacccaccacaataaacatcactacctaaaacatactccttcac-aaaacgaccactgaaaaaacgatatcca-aacca 25594389  T
Q  136 cccatcgtcactactca 152  Q
    ||||||| |||||||||    
T  25594390 cccatcgccactactca 25594406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 37123703 - 37123601
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    ||||||||||||||||||| |||||||||  ||||| |||||| |||||| |||||||||||| ||||||||||| ||  ||||||  | ||||||||||    
T  37123703 gacaacacccaccaaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactc 37123604  T
Q  152 acc 154  Q
    |||    
T  37123603 acc 37123601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 12086559 - 12086489
Alignment:
Q  57 acacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 126  Q
    ||||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||| |||||||||||    
T  12086559 acacccaccaaaataaacatcaccacctaaaacagatgtattcaagaaaacgatcactgtaaaaacgatat 12086489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 1652636 - 1652692
Alignment:
Q  39 tcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagactt 95  Q
    ||||||| ||||| |||||||||||||||||||||||||||| |||||||| |||||    
T  1652636 tcaacactcataaggacaacacccaccaaaataaacatcaccccctaaaactgactt 1652692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 156
Target Start/End: Complemental strand, 14194248 - 14194152
Alignment:
Q  57 acacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcacccc 156  Q
    ||||||||||||||| || |||||||||||||||||||   ||||| || || |||||||| |||||||| |  ||||| ||||||||||||||||||||    
T  14194248 acacccaccaaaatacacgtcaccacctaaaacagactccatcacgaaatcg-ccactgaataacgatatcc--aaccatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 32010072 - 32010016
Alignment:
Q  64 ccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaa 120  Q
    |||||||||||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  32010072 ccaaaataaacatcaccacctaaaacagactccttcacgaaaacgacctctgaaaaa 32010016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 281
Target Start/End: Original strand, 39021122 - 39021267
Alignment:
Q  138 catcgtcactactcaccccgaaagaagaccgc-tctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcg-aaat 235  Q
    |||||||||||||||| || ||||||   ||| || |||||||| ||||  |||||| |||||||| | | ||||||||||||| ||||||| || |||     
T  39021122 catcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaaag 39021221  T
Q  236 atcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||| || |||| ||||| ||||| ||||||||| |||| ||||||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaa 39021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 45354654 - 45354790
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaac-atcaccacctaaaacagacttatt 98  Q
    |||||| |||||||||||  |||||| || ||||||| ||||||||  || | |||||||||||| ||||||||  ||||||||||| || | | |  ||    
T  45354654 aagacacccctacacacagcacctagccaaaccctaccttcaacacctattaggacaacacccacaaaaataaaatatcaccacctagaatataatcttt 45354753  T
Q  99 cacgtaaacgaccactgaaaaacgatatacataaccac 136  Q
    |||| ||||||||||||||||| ||||| |||||||||    
T  45354754 cacg-aaacgaccactgaaaaaggatatccataaccac 45354790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 214
Target Start/End: Original strand, 13018094 - 13018246
Alignment:
Q  61 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaa 160  Q
    |||||||||| ||| |||||||||||||||||||   ||||  |||| |||||| ||||| ||||| ||| | ||||||| | ||||||||||||  |||    
T  13018094 ccaccaaaattaacttcaccacctaaaacagactccatcac-aaaacaaccactaaaaaatgatatccatgatcacccattgccactactcaccctaaaa 13018192  T
Q  161 gaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatc 214  Q
    |||  ||  ||||||| |||  | |  |||||||||||| |||||| |||||||    
T  13018193 gaacgcccatctaaatcaaacaccctgtcctcatcaccatagttgagccacatc 13018246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 14879708 - 14879648
Alignment:
Q  104 aaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 163  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||||| ||||||||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaa 14879648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 40689518 - 40689597
Alignment:
Q  55 caacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataacca 135  Q
    |||||||||| ||||||||||||||||| ||||| | | || |||||  |||||| || ||||||||||||| ||||||||    
T  40689518 caacacccacaaaaataaacatcaccacttaaaaaaaatttcttcac-aaaacgatcattgaaaaacgatattcataacca 40689597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 46358167 - 46358266
Alignment:
Q  55 caacacccaccaa-aataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactca 152  Q
    |||||||||| || ||||||||||| |||||||||||||||  |||||| |||||||   || |||||||| || ||||||||| ||||  |||||||||    
T  46358167 caacacccacaaagaataaacatcatcacctaaaacagactccttcacgaaaacgacatatgaaaaaacgaaatccataaccacgcatcaccactactca 46358266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 25647863 - 25647777
Alignment:
Q  195 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||||||  ||| |||| |||||||| ||||||  ||||| |||||||  || |||||||||||| ||||||||| |||| ||||||    
T  25647863 caccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctctcgacctccgatccaccaaaagaa 25647777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 16266052 - 16266000
Alignment:
Q  37 cttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaaca 90  Q
    ||||||||| ||| | ||||||| |||||||||||||||||||| |||||||||    
T  16266052 cttcaacacccatgaggacaacatccaccaaaataaacatcacc-cctaaaaca 16266000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 23328188 - 23328233
Alignment:
Q  131 aaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 176  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  23328188 aaccacccatcgtcactactcacccccaaagaacaccactcaaaat 23328233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 25648017 - 25647905
Alignment:
Q  41 aacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccat 140  Q
    ||||||||| | ||| ||||||||||||  | |  ||||||| ||||||| |||   ||||| |||| |||||||||||||||||| |  ||||| ||||    
T  25648017 aacacacatgaggaccacacccaccaaataacatgtcaccacataaaacatactccatcacg-aaaccaccactgaaaaacgatatcc--aaccatccat 25647921  T
Q  141 cgtcactactcacccc 156  Q
    | ||||||||||||||    
T  25647920 catcactactcacccc 25647905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 28937498 - 28937574
Alignment:
Q  79 ccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacc 154  Q
    |||||||||||||||   |||||| ||  |||||||| ||||||||||| ||  ||||||||||| |||||||||||    
T  28937498 ccacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacc 28937574  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 33143733 - 33143813
Alignment:
Q  76 tcaccacctaaaacagacttattcacgtaaacgaccactgaa-aaacgatatacataaccacccatcgtcactactcaccc 155  Q
    ||||||||||||||| |||  |||||| |||| ||||||||| ||||||||| ||   ||| || ||||||||||||||||    
T  33143733 tcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 50518852 - 50518956
Alignment:
Q  57 acacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccc 155  Q
    ||||||| ||||||| || |||||| ||||||||||||  |||||| | || ||||||| |||||||||||   |||| | ||||||||||||||||||     
T  50518852 acacccaacaaaatacacctcaccatctaaaacagactccttcacg-ataccaccactgtaaaaacgatat--ctaacgatccatcgtcactactcacct 50518948  T
Q  156 cgaaagaa 163  Q
    | ||||||    
T  50518949 ccaaagaa 50518956  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25184866 - 25184953
Alignment:
Q  1 aagacatccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaa 87  Q
    ||||||||| |||||||||||||||| ||  |||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  25184866 aagacatccatacacacaatacctagccaagccctaccttcaacactcatgaggacaacacccaccaaaataaacatcaccacctaaa 25184953  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 156
Target Start/End: Original strand, 10248326 - 10248430
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactc 151  Q
    |||||||||| |||||||| || ||||||||||||||| |||  |||||| |||||||||||| |||||||| || |   | ||||||||||||||||||    
T  10248326 gacaacacccgccaaaatacacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactc 10248425  T
Q  152 acccc 156  Q
    |||||    
T  10248426 acccc 10248430  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 197
Target Start/End: Original strand, 17720486 - 17720626
Alignment:
Q  55 caacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcacc 154  Q
    |||||||||| |||| ||||||||| |||||||||| |||  |||||  ||| |||| || ||||| |||||||||||||||  ||||||||||||||||    
T  17720486 caacacccactaaaa-aaacatcactacctaaaacaaactccttcaccaaaa-gacctctaaaaaaagatatacataaccacatatcgtcactactcacc 17720583  T
Q  155 ccgaaagaagaccgctctaaatgaaattctcgatcctcatcac 197  Q
    || |||  | ||| ||||||||||||  |||  ||||||||||    
T  17720584 ccaaaaataaacccctctaaatgaaacactccgtcctcatcac 17720626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 15907037 - 15906839
Alignment:
Q  8 ccctacacacaatacctagtcataccctac-ttcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaa 106  Q
    |||||||||||| |||||| |  ||||||| |||||||| ||| | ||| ||||||||  | ||| ||||||||||| ||||||||    |||||| |||    
T  15907037 ccctacacacaacacctagcccaaccctaccttcaacacccatgaggaccacacccacagagatagacatcaccaccaaaaacagatcccttcacg-aaa 15906939  T
Q  107 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 206  Q
    |||||||||||||||  ||| |||||||||   | | ||||||||| ||| ||| || ||| |||||||| |||  | |  ||||||||||| |||||||    
T  15906938 cgaccactgaaaaacagtatccataaccacatgttgccactactcatcccaaaataacacctctctaaataaaacacactgtcctcatcacctaagttga 15906839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 162
Target Start/End: Original strand, 17656495 - 17656606
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaacagacttattcacg-taaacgaccactg-aaaaacgatatacataaccacccatcgtcactact 150  Q
    ||||||||||||||||||  || |||||| ||||||||||||  |||| |  |||||||||||| ||||||||||| ||  ||| | ||| |||||||||    
T  17656495 gacaacacccaccaaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaacaccgctcattgtcactact 17656594  T
Q  151 caccccgaaaga 162  Q
    |||||| |||||    
T  17656595 cacccccaaaga 17656606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 30235877 - 30235932
Alignment:
Q  39 tcaacacacataacgacaacacccaccaaaataaacatcaccacctaaaacagact 94  Q
    ||||||| || || |||||||||||||||||||||||||||| |||||||| ||||    
T  30235877 tcaacacccaaaaggacaacacccaccaaaataaacatcaccccctaaaactgact 30235932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 41791017 - 41791069
Alignment:
Q  42 acacacataacgacaacacccaccaaaataaacatcaccacctaaaacagact 94  Q
    |||| ||||| |||||| ||||||||||||||||||||| |||||||| ||||    
T  41791017 acactcataaggacaacccccaccaaaataaacatcaccccctaaaactgact 41791069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 12197842 - 12197945
Alignment:
Q  61 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcaccccgaa 159  Q
    |||| |||||| || |||||||||| |||||||   |||| | | ||||||||| |||| ||||||| ||  ||||||| ||||||||||||||||| ||    
T  12197842 ccacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaa 12197941  T
Q  160 agaa 163  Q
    ||||    
T  12197942 agaa 12197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 163
Target Start/End: Original strand, 12442270 - 12442373
Alignment:
Q  61 ccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcaccccgaa 159  Q
    |||| |||||| || |||||||||| |||||||   |||| | | ||||||||| |||| ||||||| ||  ||||||| ||||||||||||||||| ||    
T  12442270 ccacaaaaatacacgtcaccacctacaacagacgccttcatgaacacgaccactaaaaaaacgatatccagcaccacccgtcgtcactactcacccccaa 12442369  T
Q  160 agaa 163  Q
    ||||    
T  12442370 agaa 12442373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 17656906 - 17656992
Alignment:
Q  195 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 281  Q
    |||||||||||| |||| || ||||| ||| |||  |||| ||||||| |||  |||||||| || ||||||||| |||||||||||    
T  17656906 caccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaa 17656992  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 37024 - 36920
Alignment:
Q  57 acacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccc 155  Q
    ||||||| ||||||| || |||||||||||||||||||  |||||| |||| ||||||| |||||||| || |  ||||| ||| |||||||||||||||    
T  37024 acacccaacaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatcc--aaccatccaccgtcactactcaccc 36928  T
Q  156 cgaaagaa 163  Q
    | ||||||    
T  36927 ccaaagaa 36920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 6863 - 6828
Alignment:
Q  53 gacaacacccaccaaaataaacatcaccacctaaaa 88  Q
    ||||||||||||||||||||||||||||||||||||    
T  6863 gacaacacccaccaaaataaacatcaccacctaaaa 6828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 281
Target Start/End: Complemental strand, 58439 - 58218
Alignment:
Q  64 ccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaag- 161  Q
    ||||| || ||||||||||| ||||||||||  |||||| ||||||||| || ||||| ||||| ||  || |||| |||||||||||||| || ||||     
T  58439 ccaaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaaga 58340  T
Q  162 --aagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctc 259  Q
      || ||  ||| |||| ||| ||||  |||  | |||||||| ||| |||||| |||||| ||| ||| ||||| || |||| |||  || || |||||    
T  58339 acaacactcctcaaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctc 58240  T
Q  260 aacctccgatacaccgaaagaa 281  Q
     ||||||||| |||||||||||    
T  58239 gacctccgatccaccgaaagaa 58218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 41905 - 42004
Alignment:
Q  56 aacacccaccaaaataaacatcaccacctaaaacagacttattcacgtaaacgaccact-gaaaaacgatatacataaccacccatcgtcactactcacc 154  Q
    ||||||||  |||||| |||||||||||||||||| | |  ||| || |||||||| ||  ||||||||||| |  ||||||||||||||||||||| ||    
T  41905 aacacccataaaaatacacatcaccacctaaaacaaattccttctcggaaacgacctctataaaaacgatatcc--aaccacccatcgtcactactcgcc 42002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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