View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21672_high_47 (Length: 305)
Name: NF21672_high_47
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_47 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 39823966 - 39823701
Alignment:
| Q |
1 |
agctatgccactaatactttcatgatgacaaaatcaatccttttgaaaacaacaatccaatcaactcacacaataatgaataatcaaacacatgaacaaa |
100 |
Q |
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| T |
39823966 |
agctatgccactaatactttcatgatgacaaaatcaatccttttgaaaacaacaatccaatcaactcacacaataatgaataatcaaacacatgaacgaa |
39823867 |
T |
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| Q |
101 |
ttgtgaaaaatattatatttaagaaaataaaacnnnnnnnnnnctctgaatttttagaagcataatgagataaacttcggctataacaaatgggatcaat |
200 |
Q |
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| T |
39823866 |
ttgtgaaaaatattatattttagaaaataaaacttttttttttctctgaatttttagaagcataatgagataaacttcggctataacaaatgggatcaat |
39823767 |
T |
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| Q |
201 |
tcctcacaaaactttgtgagattgaacaattggaacaaaacctactagaattaatgcatgcactga |
266 |
Q |
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| T |
39823766 |
tcctcacaaaactttgtgagattgaacaattggaacaaaacctactagaattaatgcatgcactga |
39823701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 39917913 - 39917718
Alignment:
| Q |
51 |
aacaatccaatcaactcacacaataatgaataatcaaacacatgaacaaattgtgaaaaatattatatttaagaaaataaaacnnnnnnnnnn-ctctga |
149 |
Q |
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| T |
39917913 |
aacaatccaatcaactcacacaataat-------caaacacatgaatgaattgtgaaaaatattatattttagaaa-taaaacacattttttctctctga |
39917822 |
T |
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| Q |
150 |
atttttagaagcataatgagataaacttcggctataacaaatgggatcaattcctcacaaaactttgtgagattgaacaattggaac--aaaacctacta |
247 |
Q |
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| T |
39917821 |
atttttagaagcataatgagataaactatggctataacaaatgggatcaattccacagaaaactatgtgagattgaacaattggaacaaaaaacctacta |
39917722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 39926699 - 39926613
Alignment:
| Q |
162 |
ataatgagataaacttcggctataacaaatgggatcaattcctcacaaaactttgtgagattgaacaattggaacaaaacctactagaat |
251 |
Q |
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|||||||||| || ||| |||||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
39926699 |
ataatgagatgaatttctgctatagcaaatgggatcaattccacacaaaactat---agattgaacaattggaacaaaacctactagaat |
39926613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 32018569 - 32018606
Alignment:
| Q |
156 |
agaagcataatgagataaacttcggctataacaaatgg |
193 |
Q |
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| T |
32018569 |
agaagcataatgagataaatttcggctataacgaatgg |
32018606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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