View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21672_high_49 (Length: 302)

Name: NF21672_high_49
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21672_high_49
NF21672_high_49
[»] chr1 (9 HSPs)
chr1 (108-255)||(35989953-35990100)
chr1 (78-240)||(28639889-28640051)
chr1 (79-248)||(41932481-41932650)
chr1 (79-223)||(41933428-41933572)
chr1 (88-178)||(48892146-48892236)
chr1 (139-264)||(48182288-48182412)
chr1 (191-249)||(7134687-7134745)
chr1 (118-218)||(15499433-15499534)
chr1 (88-211)||(34549901-34550024)
[»] chr2 (3 HSPs)
chr2 (78-224)||(815617-815763)
chr2 (83-217)||(21649641-21649776)
chr2 (92-211)||(33945978-33946097)
[»] chr7 (7 HSPs)
chr7 (88-264)||(18500378-18500553)
chr7 (117-247)||(42012319-42012449)
chr7 (88-211)||(1906495-1906619)
chr7 (88-130)||(19646992-19647034)
chr7 (128-176)||(20171188-20171236)
chr7 (162-194)||(24450988-24451020)
chr7 (79-139)||(36279948-36280008)
[»] chr5 (9 HSPs)
chr5 (79-211)||(27690401-27690533)
chr5 (78-255)||(22417265-22417441)
chr5 (88-257)||(36520555-36520724)
chr5 (118-253)||(8840509-8840643)
chr5 (88-211)||(28443150-28443273)
chr5 (152-255)||(22407434-22407537)
chr5 (79-211)||(32285534-32285666)
chr5 (78-147)||(17476601-17476670)
chr5 (118-207)||(32695106-32695195)
[»] chr3 (3 HSPs)
chr3 (88-264)||(20860276-20860451)
chr3 (118-253)||(29582311-29582446)
chr3 (152-254)||(36337621-36337723)
[»] chr8 (3 HSPs)
chr8 (79-229)||(17865019-17865168)
chr8 (79-249)||(32124378-32124547)
chr8 (87-145)||(38621574-38621632)
[»] chr4 (4 HSPs)
chr4 (78-255)||(52598270-52598447)
chr4 (88-210)||(34953533-34953655)
chr4 (79-180)||(56084150-56084251)
chr4 (152-240)||(1655944-1656032)
[»] chr6 (3 HSPs)
chr6 (157-255)||(33555069-33555167)
chr6 (88-180)||(17519900-17519992)
chr6 (88-131)||(6837247-6837290)
[»] scaffold0185 (1 HSPs)
scaffold0185 (79-151)||(5086-5158)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 108 - 255
Target Start/End: Complemental strand, 35990100 - 35989953
Alignment:
Q  108 tcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacg 207  Q
    ||||||||||||||||  ||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||  ||||||||  |||||||||||    
T  35990100 tcctagaccataactattgtcaaagaaaacgttttccatggtccaaccgaccaaaaatgcattaaacacaccacaaaccgtccaaacattgggtgaaacg 35990001  T
Q  208 ccacaatccacctagtctgggaggtttcagattttacaatctgaaact 255  Q
    |||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  35990000 ccacaatccacctagtctgggatgtttcggattttacaatccgaaact 35989953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 28640051 - 28639889
Alignment:
Q  78 catgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacaca 177  Q
    ||||||||  ||||||||| ||||||  | |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  28640051 catgcaaggctatttatagccttaaatcattcctagactataactacagtcaaaggaaacattttacatggtccaaccgaccaaaaatgcattaaacaca 28639952  T
Q  178 ccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagatt 240  Q
    ||| |||   |||||||| | | |||||||||||||| |||||||| || |||||||||||||    
T  28639951 ccacaaaccatccaaaccttagatgaaacgccacaattcacctagtatgtgaggtttcagatt 28639889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 41932650 - 41932481
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 178  Q
    |||||||  ||||||||||| ||||  ||||  |||||||||| ||| | |||||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  41932650 atgcaagcctatttatagtcgtaaatcagtctcagaccataacaacatttaaaggaaacattttacatggttcaactgaccaaaaatgcattaaacacac 41932551  T
Q  179 cataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatc 248  Q
    || |||  |||| |||| | ||||||||||||||||||||||||| || ||| |||| |||| |||||||    
T  41932550 cacaaaccgtcccaacctttggtgaaacgccacaatccacctagtttgagagttttcggattatacaatc 41932481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 41933572 - 41933428
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 178  Q
    |||||||  ||||||||||| ||||  ||||| | |||||||| ||| | |||||||||||||| |||||| |||| ||||| ||||| |||||||||||    
T  41933572 atgcaagcctatttatagtcgtaaatcagtcccataccataacaacatttaaaggaaacattttacatggttcaacggaccaaaaatggattaaacacac 41933473  T
Q  179 cataaattgtccaaaccatgggtgaaacgccacaatccacctagt 223  Q
    || |||  ||||||||| | |||||||||||||||||||||||||    
T  41933472 cacaaaccgtccaaacctttggtgaaacgccacaatccacctagt 41933428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 48892146 - 48892236
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 178  Q
    ||||||||  ||||||| |||| |||| |||||||||||||||| || || |||||||||  ||||||| ||| |||||||||||||||||    
T  48892146 tatttataaccttaaacaagtcatagatcataactacagtcaaatgatacgttttccatgccccaaccgtccaaaaatgcattaaacacac 48892236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 264
Target Start/End: Complemental strand, 48182412 - 48182288
Alignment:
Q  139 ttttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcaga 238  Q
    ||||| ||| |||||||||||| |||| |||||||||||||| |||  || |||||| ||||||||| | |||| |||||  |||| |||| |||||| |    
T  48182412 ttttcaatgctccaaccgaccaaaaatacattaaacacaccacaaacagt-caaaccttgggtgaaatgtcacagtccacacagtccgggatgtttcaaa 48182314  T
Q  239 ttttacaatctgaaactgtctgaata 264  Q
    ||  | ||||||||||||||| ||||    
T  48182313 ttacataatctgaaactgtctaaata 48182288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 7134687 - 7134745
Alignment:
Q  191 aaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatct 249  Q
    ||||| |||||||||| ||||| | |||||| |||||||||||||||||| ||||||||    
T  7134687 aaaccttgggtgaaacaccacatttcacctaatctgggaggtttcagattctacaatct 7134745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 15499433 - 15499534
Alignment:
Q  118 taactacagtcaaaggaaacattttccatggtccaaccgaccataaatg-cattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatcc 216  Q
    |||||||| ||||||||||||||| ||||   | ||||||||| ||| | ||||||||||||||||||  |||||| |  | |||| |||||||||||||    
T  15499433 taactacaatcaaaggaaacatttaccatttccaaaccgaccaaaaacgacattaaacacaccataaaccgtccaagcatttggtgtaacgccacaatcc 15499532  T
Q  217 ac 218  Q
    ||    
T  15499533 ac 15499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 34549901 - 34550024
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 187  Q
    ||||||||| || |||| ||||||||| |||||||||| | |||  |||| |||||||   ||||||||  || |||| ||||||||||||||  ||  |    
T  34549901 tatttatagcctaaaacaagtcctagatcataactacaattaaataaaacgttttccaccatccaaccgttcaaaaattcattaaacacaccactaaccg 34550000  T
Q  188 tccaaaccatgggtgaaacgccac 211  Q
    |||||||| |  ||||||||||||    
T  34550001 tccaaacctttagtgaaacgccac 34550024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 815617 - 815763
Alignment:
Q  78 catgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacaca 177  Q
    ||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||||    
T  815617 catgcaagcctatttatagtcttaaacaagtcctagaccataactacattcaaaggaaacgtttttcatggtccaaccgaccaaaaatgcattaaacaca 815716  T
Q  178 ccataaattgtccaaaccatgggtgaaacgccacaatccacctagtc 224  Q
    ||| |||  ||| ||||| | ||||||||| || | |||||||||||    
T  815717 ccacaaaccgtctaaacctttggtgaaacgtcatattccacctagtc 815763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 217
Target Start/End: Complemental strand, 21649776 - 21649641
Alignment:
Q  83 aagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccata 182  Q
    |||| ||||||||| ||||||| |||||||||  |||||||||||||||  || | |||||||   |||||||  ||| |||| |||||||||||||| |    
T  21649776 aagactatttatagccttaaacaagtcctagattataactacagtcaaataaagcgttttccaccttccaaccatccaaaaattcattaaacacaccaca 21649677  T
Q  183 aattgtccaaa-ccatgggtgaaacgccacaatcca 217  Q
    ||  ||||||| |  ||| ||||||||||| |||||    
T  21649676 aaccgtccaaatctttggatgaaacgccaccatcca 21649641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 211
Target Start/End: Original strand, 33945978 - 33946097
Alignment:
Q  92 tatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtcca 191  Q
    ||||| || |||| ||||||||| ||||||||||||||||  |||  |||||||| ||||||||| ||| |||| | |||||| ||||| |||| ||| |    
T  33945978 tatagcctaaaacaagtcctagatcataactacagtcaaataaaatgttttccattgtccaaccgtccaaaaattctttaaacgcaccacaaatcgtcta 33946077  T
Q  192 aaccatgggtgaaacgccac 211  Q
    |||  | |||||| ||||||    
T  33946078 aacatttggtgaatcgccac 33946097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 88 - 264
Target Start/End: Original strand, 18500378 - 18500553
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 187  Q
    |||| |||||||||||| ||||||||| ||||||||| |||||| ||||| ||| ||||||||||||| |||| ||||||||||||||||||| |||| |    
T  18500378 tattaatagtcttaaaccagtcctagatcataactacggtcaaacgaaacgtttcccatggtccaacc-accaaaaatgcattaaacacaccacaaatcg 18500476  T
Q  188 tccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaactgtctgaata 264  Q
    |||||||| | ||||||||  |||  |||| |||||||| ||||||||||||| |||||| |||| |||||| ||||    
T  18500477 tccaaacctttggtgaaacatcaccgtccaactagtctgagaggtttcagattatacaatttgaacctgtctaaata 18500553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 42012319 - 42012449
Alignment:
Q  117 ataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatcc 216  Q
    ||||||| ||||||||||||||||||| ||||||||||  |||| |||| |||||||||| |||||||   | |||||| |||||| |||||||||||||    
T  42012319 ataactatagtcaaaggaaacattttctatggtccaactaaccaaaaatacattaaacacgccataaacaattcaaaccttgggtgcaacgccacaatcc 42012418  T
Q  217 acctagtctgggaggtttcagattttacaat 247  Q
    ||||||| || ||| ||||||||| ||||||    
T  42012419 acctagtatgagagttttcagattatacaat 42012449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 1906619 - 1906495
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaac-attttccatggtccaaccgaccataaatgcattaaacacaccataaatt 186  Q
    |||||||||||||||||  |||||||| || ||||||||||||||||| |  ||||| ||||||||| || ||| |  |||||||||||| ||| |||      
T  1906619 tatttatagtcttaaacatgtcctagatcacaactacagtcaaaggaagcgtttttctatggtccaatcgtccaaagctgcattaaacactccacaaacc 1906520  T
Q  187 gtccaaaccatgggtgaaacgccac 211  Q
    ||||||||  | | |||||||||||    
T  1906519 gtccaaacttttgatgaaacgccac 1906495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 19646992 - 19647034
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaa 130  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||    
T  19646992 tatttatagtcttaaaccagtcctagatcataattacagtcaa 19647034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 20171188 - 20171236
Alignment:
Q  128 caaaggaaacattttccatggtccaaccgaccataaatgcattaaacac 176  Q
    |||||||| | |||||||||||||||||| ||| |||||||| ||||||    
T  20171188 caaaggaagcgttttccatggtccaaccgcccaaaaatgcatcaaacac 20171236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 24451020 - 24450988
Alignment:
Q  162 aaatgcattaaacacaccataaattgtccaaac 194  Q
    ||||||||||||||||||||||||| |||||||    
T  24451020 aaatgcattaaacacaccataaattttccaaac 24450988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 36279948 - 36280008
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacat 139  Q
    |||||||| ||||||||||| ||||    |||||||| |||||| ||||||||||||||||    
T  36279948 atgcaagactatttatagtcataaaacgttcctagactataactgcagtcaaaggaaacat 36280008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 79 - 211
Target Start/End: Complemental strand, 27690533 - 27690401
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 178  Q
    |||||||  ||||||||| ||||||  |||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||      
T  27690533 atgcaagcatatttatagccttaaatcagtcctagaccataactacagtcaaaggaagcgttttccatggtccaaccgaccaaaaatgcattaaacactt 27690434  T
Q  179 cataaattgtccaaaccatgggtgaaacgccac 211  Q
    || |||  ||||||||| | | |||||||||||    
T  27690433 cacaaaccgtccaaacctttgatgaaacgccac 27690401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 255
Target Start/End: Complemental strand, 22417441 - 22417265
Alignment:
Q  78 catgcaagattatttatagtcttaaa-ctagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacac 176  Q
    ||||||||| |||||||| || |||| ||| ||||||||  |||||||||||||||||||||||  | |||    ||||||||| |||| | ||||||||    
T  22417441 catgcaagactatttatattcgtaaatcta-tcctagactgtaactacagtcaaaggaaacattc-caatgcataaaccgaccaaaaatactttaaacac 22417344  T
Q  177 accataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaact 255  Q
    |||| ||| ||| |||||| ||||||||||||||||||||||  |||||||||||||||||||| || ||| |||||||    
T  22417343 accacaaactgttcaaaccttgggtgaaacgccacaatccacacagtctgggaggtttcagattatataatttgaaact 22417265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 257
Target Start/End: Complemental strand, 36520724 - 36520555
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 187  Q
    ||||||||| ||||||| |||| ||||  ||||||||||| |||||||| |||||||||| ||  |||  ||| || | |||||||||||||| |||  |    
T  36520724 tatttatagccttaaaccagtcatagattataactacagtgaaaggaaatattttccatgctcggaccagccaaaattacattaaacacaccacaaaccg 36520625  T
Q  188 tccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaactgt 257  Q
     ||||||| || |||| || ||||| ||||| || |||||||||||||| ||||||||||| ||| ||||    
T  36520624 cccaaaccttgtgtgacacaccacactccacataatctgggaggtttcatattttacaatccgaatctgt 36520555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 8840509 - 8840643
Alignment:
Q  118 taactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatcca 217  Q
    |||||||| ||||||||||| ||||| ||| |||||| ||||| |||| |||||||||||||| |||   |||||||| |||||||||||||||  ||||    
T  8840509 taactacaatcaaaggaaactttttc-atgatccaactgaccaaaaatacattaaacacaccacaaaccatccaaaccttgggtgaaacgccacgttcca 8840607  T
Q  218 cctagtctgggaggtttcagattttacaatctgaaa 253  Q
    | ||| |||||||||||| |||| | ||||| ||||    
T  8840608 cttagcctgggaggtttcggattatgcaatccgaaa 8840643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 28443150 - 28443273
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 187  Q
    ||||||||| |||||||   ||||||| |||||||||||||||| || || |||| ||||| ||||||  ||| ||||||||||||||||||| |||| |    
T  28443150 tatttatagccttaaacctttcctagatcataactacagtcaaatgatacgtttttcatggcccaaccatccaaaaatgcattaaacacaccacaaatcg 28443249  T
Q  188 tccaaaccatgggtgaaacgccac 211  Q
    |||||||  | ||| |||||||||    
T  28443250 tccaaacatttggttaaacgccac 28443273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 255
Target Start/End: Complemental strand, 22407537 - 22407434
Alignment:
Q  152 aaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctga 251  Q
    ||||||||| |||| |||||||||||||| ||| |||| ||| | |||||||||||| ||| |||||  |||||||||||||| ||||| || ||| |||    
T  22407537 aaccgaccaaaaatacattaaacacaccacaaactgtctaaatcttgggtgaaacgcgacagtccacacagtctgggaggttttagattatataatttga 22407438  T
Q  252 aact 255  Q
    ||||    
T  22407437 aact 22407434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 32285534 - 32285666
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 178  Q
    |||||||  ||||||||| |||||||   ||||||| |||||||||||||||||||| | ||||||| || |||||   ||  |||| ||||||||||||    
T  32285534 atgcaagtctatttatagccttaaacatatcctagatcataactacagtcaaaggaagcgttttccaaggcccaactatcccaaaatacattaaacacac 32285633  T
Q  179 cataaattgtccaaaccatgggtgaaacgccac 211  Q
    || |||  |||||||   | |||||||||||||    
T  32285634 cacaaaccgtccaaatttttggtgaaacgccac 32285666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 17476601 - 17476670
Alignment:
Q  78 catgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatg 147  Q
    ||||||| ||||||||||| | ||||||  || |||||| |||||||| ||||||||||||||| |||||    
T  17476601 catgcaaaattatttatagccataaacttatcatagaccgtaactacaatcaaaggaaacatttaccatg 17476670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 32695106 - 32695195
Alignment:
Q  118 taactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacg 207  Q
    |||||||| ||||||||| | |||| ||||| ||||||| ||| |||||||||||| |||||| |||  ||||||||  | |||||||||    
T  32695106 taactacaatcaaaggaagcgttttacatggcccaaccgtccaaaaatgcattaaatacaccacaaaccgtccaaacttttggtgaaacg 32695195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 88 - 264
Target Start/End: Complemental strand, 20860451 - 20860276
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 187  Q
    ||||||||| |||||||  ||||||| |  |||||||| | ||| |||||||||| |||| ||||||||| || |||| |||||||||| ||| ||| |     
T  20860451 tatttatagccttaaacctgtcctaggctctaactacaatgaaatgaaacatttttcatgctccaaccgatcaaaaatacattaaacac-ccacaaacta 20860353  T
Q  188 tccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaactgtctgaata 264  Q
    | |||||| ||||||||| |||||||||||| ||||||||||||||||||||| |||||| ||||||| ||| ||||    
T  20860352 ttcaaaccttgggtgaaatgccacaatccacgtagtctgggaggtttcagattatacaatatgaaactctctaaata 20860276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 118 - 253
Target Start/End: Original strand, 29582311 - 29582446
Alignment:
Q  118 taactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatcca 217  Q
    |||||||||| ||||||||||||| | ||| |||||||||||  ||||||||||||||||||| ||||  |||||||| |||||||||||||||| | ||    
T  29582311 taactacagtaaaaggaaacatttacaatgttccaaccgaccgaaaatgcattaaacacaccacaaatcatccaaaccttgggtgaaacgccacacttca 29582410  T
Q  218 cctagtctgggaggtttcagattttacaatctgaaa 253  Q
    |  ||||| |||||||| ||||| || |||| ||||    
T  29582411 cacagtctaggaggttttagattatataatccgaaa 29582446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 254
Target Start/End: Original strand, 36337621 - 36337723
Alignment:
Q  152 aaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctga 251  Q
    ||||||| | ||||||||||||||||||| |||  ||||||||  |||||| || | |||| ||||   ||||| |||||||||||||| || |||||||    
T  36337621 aaccgactaaaaatgcattaaacacaccacaaaccgtccaaactttgggtgtaatgtcacattccatgcagtctaggaggtttcagattatataatctga 36337720  T
Q  252 aac 254  Q
    |||    
T  36337721 aac 36337723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 229
Target Start/End: Complemental strand, 17865168 - 17865019
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 178  Q
    |||||||  |||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||| || ||| | |||| ||||| ||||||||| |    
T  17865168 atgcaaggctatttatagtcttaaactagtcatagactataactacaatcaaaggaaacgttttccatagttcaa-caaccaaaaatgaattaaacacgc 17865070  T
Q  179 cataaattgtccaaaccatgggtgaaacgccacaatccacctagtctggga 229  Q
    || |||  || |||||| ||||||||| |||||| || |||||||||||||    
T  17865069 cacaaaccgttcaaaccttgggtgaaaagccacagtcaacctagtctggga 17865019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 249
Target Start/End: Complemental strand, 32124547 - 32124378
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 178  Q
    |||||||  |||||| |||||||||| |||| || | |||||||| ||||||| ||||  |||  ||||||||||||||||| |||||||||||| ||||    
T  32124547 atgcaagcctatttaaagtcttaaaccagtc-taaatcataactatagtcaaatgaaaggtttgtcatggtccaaccgaccaaaaatgcattaaagacac 32124449  T
Q  179 cataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatct 249  Q
     | |||  ||||||| | ||||||||||| || | | ||| ||||||||||||||||||||| || |||||    
T  32124448 aaaaaaccgtccaaatcttgggtgaaacgtcatagtgcacatagtctgggaggtttcagattatataatct 32124378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 38621632 - 38621574
Alignment:
Q  87 ttatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttcca 145  Q
    |||||||||||||||||| ||||||||| |||||||||  |||||  ||||||||||||    
T  38621632 ttatttatagtcttaaacgagtcctagatcataactactatcaaataaaacattttcca 38621574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 255
Target Start/End: Original strand, 52598270 - 52598447
Alignment:
Q  78 catgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacaca 177  Q
    ||||||||| ||| ||||||| |||||   |||||||   |||||||||||||| ||||| ||| | | | |||||||||||| ||||  ||| ||||||    
T  52598270 catgcaagactatgtatagtcataaacctatcctagattgtaactacagtcaaaagaaacgtttacaaagctccaaccgaccaaaaatatattgaacaca 52598369  T
Q  178 ccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaact 255  Q
    |||  || ||||||||||   ||||||||||||||||||||  ||||||| ||||||| |||  || |||||||||||    
T  52598370 ccacgaactgtccaaacctctggtgaaacgccacaatccacacagtctggaaggtttccgatcatataatctgaaact 52598447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 34953655 - 34953533
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacaccataaattg 187  Q
    ||||||||| || |||  ||||||||| ||||||||||||||||  |||| | |||||   |||||||| ||| ||||||||||||||| |||  ||  |    
T  34953655 tatttatagcctaaaataagtcctagatcataactacagtcaaataaaacgtgttccacaatccaaccgtccaaaaatgcattaaacactccactaaccg 34953556  T
Q  188 tccaaaccatgggtgaaacgcca 210  Q
    |||||||||| ||||||||||||    
T  34953555 tccaaaccattggtgaaacgcca 34953533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 180
Target Start/End: Original strand, 56084150 - 56084251
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacac 178  Q
    |||||||  ||||||||| ||||||| ||||||||| |||||||||| ||||||   |  |||||||| | ||||| | ||| |||||||||||||||||    
T  56084150 atgcaagcatatttatagccttaaacaagtcctagatcataactacaatcaaagagtatgttttccatagcccaacagtccaaaaatgcattaaacacac 56084249  T
Q  179 ca 180  Q
    ||    
T  56084250 ca 56084251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 1656032 - 1655944
Alignment:
Q  152 aaccgaccataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagatt 240  Q
    |||| ||||||||| |||||||||||||| |||| ||| ||||| ||  ||||| |||| | ||||  |||||| ||||||||| ||||    
T  1656032 aaccaaccataaattcattaaacacaccacaaatcgtctaaaccttgattgaaatgccagagtccatatagtcttggaggtttcggatt 1655944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 255
Target Start/End: Complemental strand, 33555167 - 33555069
Alignment:
Q  157 accataaatgcattaaacacaccataaattgtccaaaccatgggtgaaacgccacaatccacctagtctgggaggtttcagattttacaatctgaaact 255  Q
    |||| |||||||||||| |||||| |||  || |||||| ||||||  ||||||||||||||  ||||||||||||||| |||| || |||||||||||    
T  33555167 accaaaaatgcattaaatacaccacaaaccgttcaaaccttgggtgttacgccacaatccacacagtctgggaggtttcggattatataatctgaaact 33555069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 17519900 - 17519992
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtccaaccgaccataaatgcattaaacacacca 180  Q
    ||||||||| || |||| |||| |||| ||||||||||||||||  ||| ||||| ||  ||||||||||||| |||| ||||||||||||||    
T  17519900 tatttatagcctaaaacaagtcatagatcataactacagtcaaataaaatatttttcaccgtccaaccgaccaaaaattcattaaacacacca 17519992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 6837290 - 6837247
Alignment:
Q  88 tatttatagtcttaaactagtcctagaccataactacagtcaaa 131  Q
    ||||||||||||||||  ||||||||| ||||||||||||||||    
T  6837290 tatttatagtcttaaatcagtcctagatcataactacagtcaaa 6837247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 5086 - 5158
Alignment:
Q  79 atgcaagattatttatagtcttaaactagtcctagaccataactacagtcaaaggaaacattttccatggtcc 151  Q
    |||||||  ||||||||  ||||||| |||| || |||||||||||| |||||||||||||||| ||| ||||    
T  5086 atgcaagcctatttataaccttaaacaagtcataaaccataactacaatcaaaggaaacatttttcatagtcc 5158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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