View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21672_high_5 (Length: 430)
Name: NF21672_high_5
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Original strand, 36605795 - 36606206
Alignment:
| Q |
20 |
gacatcatcaaaagctgggggaagatggccagaagcaggcctttctgttgctagattctgtaaaaccattcccttctcttcttctaaaactttctggctt |
119 |
Q |
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| T |
36605795 |
gacatcatcaaaagctgggggaagatggccagaagcaggcctttctgttgctagattctgtaaaaccattcccttctcttcttctaaaactttctggctt |
36605894 |
T |
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| Q |
120 |
gaaattttagtagatatattcagaggtgcaatttcagccactgaggacactctttccctcaccatgaacttgtcatcaccagttgagatgtacataagct |
219 |
Q |
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| T |
36605895 |
gaaattttagtagatatattcagaggtgcaatttcagccactgaggacactctttccctcaccatgaacttgtcatcaccagttgagatgtacataagct |
36605994 |
T |
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| Q |
220 |
ttggctggct-actttatgaggcctattagttggcaagcttgctggactaacttcacaaacagacttttttccagaaatggaaagtgaatgtttgagaga |
318 |
Q |
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| T |
36605995 |
ttggctggctaactttatgaggcctattatttggcaagcttactggactaacttcacaaacagacttttttccagaaatggaaagtgaatgtttgagaga |
36606094 |
T |
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| Q |
319 |
attgatcgaagccatttccttacaaatatcttgaaggtttttgatttcttgtgtgactttggcagacggaacatcaaactcaacggcatcagatgtagtt |
418 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
36606095 |
attgattgaagccatttccttacaaatatcttgaaggtttttgatttcttgtgtgactttggcagacggaacatcacactcaacgacatcagatgtagtt |
36606194 |
T |
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| Q |
419 |
gtttgatttata |
430 |
Q |
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| T |
36606195 |
gtttgatttata |
36606206 |
T |
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