View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21672_high_7 (Length: 416)
Name: NF21672_high_7
Description: NF21672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21672_high_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 49583506 - 49583102
Alignment:
| Q |
12 |
atgagatggacatcatcaaaggaatcagcttaaaacttttggcaatggaacaattgcttttacaacatgctgaaatgaggggaaaagttgttctggttca |
111 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49583506 |
atgacatggatatcttcaaaggaatcagcttaaaacttttggcaatggaacaattgcttttacaacatgctgaaatgaggggaaaagttgttctggttca |
49583407 |
T |
|
| Q |
112 |
aatcgcaaaccctgctagaggacgcggaaaggatgtgcaagaagtgcagtgtgaaacttatgcaaccgtgaaaaggataaacgacacatttggaaggcct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49583406 |
aatcgcaaaccctgctagaggacgcggaaaggatgtgcaagaagtgcagtgtgaaacttatgcaaccgtgaaaaggataaacgacacatttggaaggcct |
49583307 |
T |
|
| Q |
212 |
ggatacacacctgtagtcttgatcgatacaacactccagagttacgagagaatcgcttactatgcaattgcggaatgctgtcttgttacagcagtgagag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
49583306 |
ggatacacacctgtagtcttgatcgatacaacactccagagttacgagagaatcgcttactatgcaattgcggaatgttgtcttgttacagcagtgagag |
49583207 |
T |
|
| Q |
312 |
atgggatgaatcttataccttatgagtatatcatttgtagacagggaaacgagaagatagatgagattttaggaataaactcaaccgtccaaaagaagag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49583206 |
atgggatgaatcttataccttatgagtatatcatttgtagacagggaaacgagaagatagatgagattttaggaataaactcaaccgtccaaaagaagag |
49583107 |
T |
|
| Q |
412 |
catgc |
416 |
Q |
| |
|
||||| |
|
|
| T |
49583106 |
catgc |
49583102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 342
Target Start/End: Complemental strand, 44591358 - 44591318
Alignment:
| Q |
302 |
gcagtgagagatgggatgaatcttataccttatgagtatat |
342 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
44591358 |
gcagttagggatgggatgaatcttataccttatgaatatat |
44591318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University