View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21673_high_3 (Length: 362)
Name: NF21673_high_3
Description: NF21673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21673_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 47172769 - 47173126
Alignment:
| Q |
1 |
actgcttgtaacacagaagattctttctttggtgacacaggaggtaccacctctttactcaatccaacatctttttgtttctctgattcctccgtcaaaa |
100 |
Q |
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| T |
47172769 |
actgcttgtaacacagaagattctttctttggtgacacaggaggtaccacctctttactcaatccaacatctttttgcttctctgattcctccgtcaaaa |
47172868 |
T |
|
| Q |
101 |
ccttagcatctgatgaagtgttgctctctggttttactggctccggcggcgatggctgcaccggagccaaattagcaggaatttcaggtacagatccttg |
200 |
Q |
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| T |
47172869 |
ccttagcatctgatgaagtgttgctctctggttttactggctccggcggcgatggctgcaccggagccaaattagctggaatttcaggtacagatccttg |
47172968 |
T |
|
| Q |
201 |
attattcttatctgaatttgatgaacaggcttccatttttgaagggtgatcattctcagcctttgaaatcgaggaaacaggactgctacgaacaccgaat |
300 |
Q |
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| T |
47172969 |
attattcttatctgaatttgatgaacaagcttccatttttgaagggtgatcactctcagcctttgaaatcgacgaaacaggactgctacgaacaccgaat |
47173068 |
T |
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| Q |
301 |
atagctggattttcatcctcatgcttcactggtctcggtcttttcctctgtggtgctg |
358 |
Q |
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| T |
47173069 |
atagctggattttcatcctcatgcttcactggtctcggtcttttcctctttggtgctg |
47173126 |
T |
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