View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21673_high_5 (Length: 337)

Name: NF21673_high_5
Description: NF21673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21673_high_5
NF21673_high_5
[»] chr3 (5 HSPs)
chr3 (32-309)||(50806530-50806807)
chr3 (32-309)||(50869070-50869347)
chr3 (32-309)||(44196070-44196331)
chr3 (138-309)||(48553855-48554026)
chr3 (141-171)||(26599146-26599176)
[»] chr7 (4 HSPs)
chr7 (139-215)||(39362045-39362118)
chr7 (132-171)||(39591530-39591569)
chr7 (139-171)||(30456520-30456552)
chr7 (139-171)||(35536075-35536107)
[»] chr6 (1 HSPs)
chr6 (141-192)||(2732311-2732360)
[»] chr4 (1 HSPs)
chr4 (139-171)||(31038937-31038969)
[»] chr2 (1 HSPs)
chr2 (141-173)||(33944571-33944603)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 32 - 309
Target Start/End: Complemental strand, 50806807 - 50806530
Alignment:
Q  32 tctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806807 tctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatt 50806708  T
Q  132 tcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806707 tcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatg 50806608  T
Q  232 gaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50806607 gaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 50806530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 32 - 309
Target Start/End: Original strand, 50869070 - 50869347
Alignment:
Q  32 tctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869070 tctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatt 50869169  T
Q  132 tcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869170 tcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatg 50869269  T
Q  232 gaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50869270 gaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 50869347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 309
Target Start/End: Original strand, 44196070 - 44196331
Alignment:
Q  32 tctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaacagcaggtcactggagatccaaacccaatt 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44196070 tctattaattcactttggttattgatggtatactaagtaatttacactcacaattctttgatgcataaaactgcaggtcactggagatccaaacccaatt 44196169  T
Q  132 tcaaagcaacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatg 231  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||                |||||||||||||||||||    
T  44196170 tcaaagcaacttatatgaaaactatttgactttattttaaataaaaacagcttatacataagcgc----------------taagttgtttatccaaatg 44196253  T
Q  232 gaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  44196254 gaacctttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccttttgttcccattatgcatgt 44196331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 138 - 309
Target Start/End: Complemental strand, 48554026 - 48553855
Alignment:
Q  138 caacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaagttgtttatccaaatggaacct 237  Q
    |||||| ||||||||| || ||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||    
T  48554026 caacttttatgaaaacaatctgactttattttatataaaaatagcttatacataaacgcttatgctataagtgcttaagttgttaatccaaatggaacct 48553927  T
Q  238 ttatggtaaaatgccaatacctgccatgatatactcaggagcagcatagccatttgttcccatcatgcatgt 309  Q
     |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  48553926 atatggtaaaatgccaatacctgacatgatatactcaggagcagcatagccttttgttcccattatgcatgt 48553855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 26599176 - 26599146
Alignment:
Q  141 cttatatgaaaactatttgactttattttat 171  Q
    |||||||||||||||||||||||||||||||    
T  26599176 cttatatgaaaactatttgactttattttat 26599146  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 39362118 - 39362045
Alignment:
Q  139 aacttatatgaaaactatttgactttattttatataaaaacagcttatacataagtgcttatgctataagtgcttaa 215  Q
    |||||| |||||||| ||||||||||  ||   || |||| ||||||||||||||||||||||||||||||||||||    
T  39362118 aacttacatgaaaacaatttgacttttatt---atgaaaatagcttatacataagtgcttatgctataagtgcttaa 39362045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 39591530 - 39591569
Alignment:
Q  132 tcaaagcaacttatatgaaaactatttgactttattttat 171  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  39591530 tcaaaacaacttatatgaaaacaatttgactttattttat 39591569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 30456520 - 30456552
Alignment:
Q  139 aacttatatgaaaactatttgactttattttat 171  Q
    ||||||||||||||| |||||||||||||||||    
T  30456520 aacttatatgaaaacaatttgactttattttat 30456552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 35536107 - 35536075
Alignment:
Q  139 aacttatatgaaaactatttgactttattttat 171  Q
    ||||||||||||||| |||||||||||||||||    
T  35536107 aacttatatgaaaacaatttgactttattttat 35536075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 2732311 - 2732360
Alignment:
Q  141 cttatatgaaaactatttgactttattttatataaaaacagcttatacataa 192  Q
    ||||||||||||  ||||||||||||||  |||||||| |||||||||||||    
T  2732311 cttatatgaaaataatttgactttattt--tataaaaatagcttatacataa 2732360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 31038937 - 31038969
Alignment:
Q  139 aacttatatgaaaactatttgactttattttat 171  Q
    ||||||||||||||| |||||||||||||||||    
T  31038937 aacttatatgaaaacaatttgactttattttat 31038969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 33944603 - 33944571
Alignment:
Q  141 cttatatgaaaactatttgactttattttatat 173  Q
    ||||||||||||| |||||||||||||||||||    
T  33944603 cttatatgaaaacaatttgactttattttatat 33944571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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