View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21674_high_3 (Length: 340)
Name: NF21674_high_3
Description: NF21674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21674_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 39 - 340
Target Start/End: Complemental strand, 22014749 - 22014451
Alignment:
| Q |
39 |
agtcagtgttgtcaaatagcggtgctacagcttagcgagatttgaacaagttatttatcacaaattattgtaaaatagggtcgttgtagctcatagctga |
138 |
Q |
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| T |
22014749 |
agtcagtgttgtcaaatagcggtgctacagcttagcgagattttaacaagttatttatcacaaattattgtaaaatagggtcgttgtagctcataactga |
22014650 |
T |
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| Q |
139 |
atttgtacaactgctattttccgcaatccgtgattgacaacattgcatatagtttaagcttaaagttacttggcaagagatagcaaaccaacaactgata |
238 |
Q |
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| T |
22014649 |
atttgtccaactgctattttccgcaatccgtgattgacaacattgcatatagtttaagctcaaagttactaggcaagagatagcaaac---caactgata |
22014553 |
T |
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| Q |
239 |
tcatatcacaacnnnnnnnnccttgcttgctctaaaatagtaccatggagggactaactttggtcgaacaacgggtggacctttcatttcaacgagttat |
338 |
Q |
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| T |
22014552 |
tcatatcacaacttttttttccttgcttgctctaaaatagtaccatggagggactaactttggtcgaacaacgggtggacctttcatttcaacgagttat |
22014453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 180
Target Start/End: Original strand, 8600790 - 8600823
Alignment:
| Q |
147 |
aactgctattttccgcaatccgtgattgacaaca |
180 |
Q |
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| T |
8600790 |
aactgctattttccgcaatccgtgattaacaaca |
8600823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 35840675 - 35840635
Alignment:
| Q |
147 |
aactgctattttccgcaatccgtgattgacaacattgcata |
187 |
Q |
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| T |
35840675 |
aactgctatcttccgcaatctgtaattgacaacattgcata |
35840635 |
T |
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