View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21674_high_4 (Length: 327)
Name: NF21674_high_4
Description: NF21674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21674_high_4 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0689 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 4 - 327
Target Start/End: Original strand, 9229947 - 9230270
Alignment:
| Q |
4 |
tcatcaaaaagatcattaatatcaaaacctttaggatagttatccaggaacttgtttacagatactgtaatgaaaggaacataggagtttgtcgctagat |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9229947 |
tcatcaaaaagatcattaatatcaaaacctttaggatagttatccaggaacttgtttacagatactgtaatgaaaggaacataggagtttgtcgctagat |
9230046 |
T |
|
| Q |
104 |
atttgaccaaataggatcgtccagttcctatagaacctatcactaaaataccccgaggaggggatagggctaagcggagcgaaaagggttttccatgaga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
9230047 |
atttgaccaaataggatcgtccagttcctatagaacctatcactaaaataccccgaggaggggatacggttaagcggagcgaaaagggttttccatgaga |
9230146 |
T |
|
| Q |
204 |
tgggaaatcagaaagattagctccagacggggtttctgaataagtgattgtctgataatgagcgaggaatatccgtctttctgctaagcaggatgtattg |
303 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9230147 |
tgggaaatgcaaaagattagctccacacggggtttctgaataagtgattgtctgataatgagcgaggaatatccgtctttctgctaagcaggatgtattg |
9230246 |
T |
|
| Q |
304 |
aactcataatttagtagatttttt |
327 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
9230247 |
aactcataatttagtagatttttt |
9230270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 18352639 - 18352317
Alignment:
| Q |
4 |
tcatcaaaaagatcattaatatcaaaacctttaggatagttatccaggaacttgtttacagatactgtaatgaaaggaacataggagtttgtcgctagat |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18352639 |
tcatcaaaaagatcattaatatcaaaacctttaggatagttatccaggaacttgtttacagatactgtaatgaaaggaacataggagtttgtcgctagat |
18352540 |
T |
|
| Q |
104 |
atttgaccaaataggatcgtccagttcctatagaacctatcactaaaataccccgaggaggggatagggctaagcggagcgaaaagggttttccatgaga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
18352539 |
atttgaccaaataggatcgtccagttcctatagaacctatcactaaaata-cccgaggaggggatacggttaagcggagcgaaaagggttttccatgaga |
18352441 |
T |
|
| Q |
204 |
tgggaaatcagaaagattagctccagacggggtttctgaataagtgattgtctgataatgagcgaggaatatccgtctttctgctaagcaggatgtattg |
303 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18352440 |
tgggaaatgcaaaagattagctccacacggggtttctgaataagtgattgtctgataatgagcgaggaatatccgtctttctgctaagcaggatgtattg |
18352341 |
T |
|
| Q |
304 |
aactcataatttagtagatttttt |
327 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
18352340 |
aactcataatttagtagatttttt |
18352317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 327
Target Start/End: Complemental strand, 2916306 - 2915981
Alignment:
| Q |
2 |
catcatcaaaaagatcattaatatcaaaacctttaggatagttatccaggaacttgtttacagatactgtaatgaaaggaacataggagtttgtcgctag |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2916306 |
catcatcaaaaagatcattaatatcaaaacatttatgatagttatccataaacttgtttagagatactgtaatgaaaggaacataggagtttgtcgctag |
2916207 |
T |
|
| Q |
102 |
atatttgaccaaataggatcgtccagttcctatagaacctatcactaaaataccccgaggaggggatagggctaagcggagcgaaaagggttttccatga |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2916206 |
atatttgaccaaataggatcgtccagttcctattaaacctatcactaaaatacccctaggaggggatagggctaagcggagcaaaaagggttttccatga |
2916107 |
T |
|
| Q |
202 |
gatgggaaatcagaaagattagctccagacggggtttctgaataagtgattgtctgataatgagcgaggaatatccgtctttctgctaagcaggatgtat |
301 |
Q |
| |
|
||||||||||| || ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2916106 |
gatgggaaatccaaacgattagccccacacggggtttctgaataagtgattgtctgataatgagcgaggaatatccgtctttctgctaagcaggatgtat |
2916007 |
T |
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| Q |
302 |
tgaactcataatttagtagatttttt |
327 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
2916006 |
tgaactcataatttagtagatttttt |
2915981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 2 - 319
Target Start/End: Original strand, 7708910 - 7709226
Alignment:
| Q |
2 |
catcatcaaaaagatcattaatatcaaaacctttaggatagttatccaggaacttgtttacagatactgtaatgaaaggaacataggagtttgtcgctag |
101 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||| |
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| T |
7708910 |
catcataaaaaagatccttaatatcaaaacatttaggatatttatccaggaacttgtttagagatactataattaaaggaacataggagtttgtcgctag |
7709009 |
T |
|
| Q |
102 |
atatttgaccaaataggatcgtccagttcctatagaacctatcactaaaataccccgaggaggggatagggctaagcggagcgaaaagggttttccatga |
201 |
Q |
| |
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|||||||||| ||||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7709010 |
atatttgaccgaataggatcgtccagttcctacaaaatctatcactaaaataccccttggaggggatagggctaagcggagcgaaaaggattttccatga |
7709109 |
T |
|
| Q |
202 |
gatgggaaatcagaaagattagctccagacggggtttctgaataagtgattgtctgataatgagcgaggaatatccgtctttctgctaagcaggatgtat |
301 |
Q |
| |
|
||||||||||| || ||||||| || || || ||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7709110 |
gatgggaaatccaaacgattagcctcacac-ggatttctgaataagtgattgtttgacaatgagcgaggaatgtccgtctttctgctaagcaggatgtat |
7709208 |
T |
|
| Q |
302 |
tgaactcataatttagta |
319 |
Q |
| |
|
|||||||||||||||||| |
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| T |
7709209 |
tgaactcataatttagta |
7709226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0689 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0689
Description:
Target: scaffold0689; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 27 - 314
Target Start/End: Complemental strand, 3045 - 2758
Alignment:
| Q |
27 |
aaaacctttaggatagttatccaggaacttgtttacagatactgtaatgaaaggaacataggagtttgtcgctagatatttgaccaaataggatcgtcca |
126 |
Q |
| |
|
|||||||||| | | |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3045 |
aaaacctttaagcttgttatccaggaacttgttcagaaatactgtaatgaaaggaacataggagtttgtcgctaggtatttgaccaaataggatcgtccg |
2946 |
T |
|
| Q |
127 |
gttcctatagaacctatcactaaaataccccgaggaggggatagggctaagcggagcgaaaagggttttccatgagatgggaaatcagaaagattagctc |
226 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| |||| ||||||| | || |||||| | |
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|
| T |
2945 |
gttcctatagaacctatcactaaaatacccctagagggagatagggctaagcggagcgaaaagggttttccacgagacgggaaatgaaaactattagccc |
2846 |
T |
|
| Q |
227 |
cagacggggtttctgaataagtgattgtctgataatgagcgaggaatatccgtctttctgctaagcaggatgtattgaactcataatt |
314 |
Q |
| |
|
|| ||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
2845 |
cacacgaagtttgtgaataagtgattgtctgataatgagcaaggaatatccgcctttctgctaaacaggatgtattgaactcataatt |
2758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 71 - 314
Target Start/End: Original strand, 197063 - 197297
Alignment:
| Q |
71 |
taatgaaaggaacataggagtttgtcgctagatatttgaccaaataggatcgtccagttcctatagaacctatcactaaaataccccgaggaggggatag |
170 |
Q |
| |
|
|||||||||||| || | | ||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
197063 |
taatgaaaggaaaatcgtaatttttcgttaggtatttgaccaaataggatcgtccagttcctatagaacctatcactaaaataccc---------gatag |
197153 |
T |
|
| Q |
171 |
ggctaagcggagcgaaaagggttttccatgagatgggaaatcagaaagattagctccagacggggtttctgaataagtgattgtctgataatgagcgagg |
270 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||| | || |||||| ||| ||| ||||| |||||||||||||||||||||||||| ||| |
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|
| T |
197154 |
ggctaagcggaacgaaaagggttttccatgagatggtaaatgaaaacgattagtcccacacgaggtttgggaataagtgattgtctgataatgagcaagg |
197253 |
T |
|
| Q |
271 |
aatatccgtctttctgctaagcaggatgtattgaactcataatt |
314 |
Q |
| |
|
||||| |||||||||||||| ||||| |||| ||||||||||| |
|
|
| T |
197254 |
aatatacgtctttctgctaaagaggatctattaaactcataatt |
197297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 51050004 - 51049972
Alignment:
| Q |
22 |
atatcaaaacctttaggatagttatccaggaac |
54 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
51050004 |
atatcaaaacctttaggatagttatccaggaac |
51049972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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