View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21675_high_1 (Length: 542)

Name: NF21675_high_1
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21675_high_1
NF21675_high_1
[»] chr7 (15 HSPs)
chr7 (372-517)||(2335724-2335869)
chr7 (176-322)||(2335577-2335723)
chr7 (33-194)||(2335349-2335501)
chr7 (367-517)||(2319322-2319473)
chr7 (348-517)||(2326134-2326305)
chr7 (45-133)||(1540543-1540631)
chr7 (33-126)||(1556595-1556688)
chr7 (33-134)||(1563843-1563944)
chr7 (32-135)||(1605256-1605359)
chr7 (33-106)||(2322189-2322262)
chr7 (33-101)||(1597283-1597351)
chr7 (33-104)||(1089530-1089601)
chr7 (33-117)||(2326479-2326563)
chr7 (32-135)||(1106869-1106972)
chr7 (33-106)||(3954367-3954440)
[»] scaffold0491 (1 HSPs)
scaffold0491 (38-126)||(5202-5290)
[»] chr8 (3 HSPs)
chr8 (38-138)||(18738419-18738518)
chr8 (38-138)||(18743383-18743482)
chr8 (38-126)||(18748361-18748449)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 7e-72; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 372 - 517
Target Start/End: Original strand, 2335724 - 2335869
Alignment:
Q  372 aaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaatttttccatgttcacacaagacttttatatctaatttcgtcaaaca 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  2335724 aaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaatttttccatcttcacactagacttttatatctaatttcgtcaaaca 2335823  T
Q  472 tgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2335824 tgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat 2335869  T

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Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 176 - 322
Target Start/End: Original strand, 2335577 - 2335723
Alignment:
Q  176 tttttcgtaggaatttttctttgaaaatcattgcattttagagataactgtttttctcggaaatcgtaggaaatatcaagatttctaatgtaagtttggc 275  Q
    |||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2335577 tttttcgtaggaatttgtctttgaaaatcattgtattttagagatacctgtttttctcggaaatcgtaggaaatatcaagatttctaatgtaagtttggc 2335676  T
Q  276 catagcgtgtggaaagaatcttacttcttttggtccagcatgtacca 322  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  2335677 aatagcgtgtggaaagaatcttacttcttttggtccagcatgtacca 2335723  T

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Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 33 - 194
Target Start/End: Original strand, 2335349 - 2335501
Alignment:
Q  33 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaagaaacact 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  2335349 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcac---------ccttgcaagaaacact 2335439  T
Q  133 tcagaagcttgaattaatatttagtttatccattctaataggttttttcgtaggaatttttc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2335440 tcagaagcttgaattaatatttagtttatccattctaataggttttttcttaggaatttttc 2335501  T

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Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 367 - 517
Target Start/End: Original strand, 2319322 - 2319473
Alignment:
Q  367 ccttcaaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaat-ttttccatgttcacacaagacttttatatctaatttcgt 465  Q
    |||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| || |    
T  2319322 ccttcaaagaatgatgcaaaggagaaaaacttgtctccttcataaatgatgctattaaatattttccatgttcacacaagacttttatatctaatgtcat 2319421  T
Q  466 caaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat 517  Q
     | |||||||||| || ||||||||||||||||||| |||||||| ||||||    
T  2319422 gatacatgtgtagtactatcaatgagtctaatcattcaatcgtaccgaatat 2319473  T

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Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 517
Target Start/End: Original strand, 2326134 - 2326305
Alignment:
Q  348 aaaattgttgtcatgtctaccttcaaagaatgatgcaaaagagaaaaacatgtatccttcataaataatgctattaaa--tttttccatgttcacacaag 445  Q
    |||||||||||||| ||  | |||||||||||||||| | |||||| ||||||||||||| ||||| ||||| ||| |  |||||| ||||||||| |||    
T  2326134 aaaattgttgtcatttcc-ctttcaaagaatgatgcataggagaaatacatgtatccttcgtaaatgatgcttttacatttttttctatgttcacataag 2326232  T
Q  446 acttttatatct-aatttcgtcaaacatgtgtagcacaatcaatgagtctaatcattaaatcgtactgaatat 517  Q
    |||||||| ||| ||| |||| | ||||||||||||| |||||| ||||||||||||| ||||||| ||||||    
T  2326233 acttttatttctaaatgtcgtgacacatgtgtagcaccatcaattagtctaatcattatatcgtacagaatat 2326305  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 1540631 - 1540543
Alignment:
Q  45 attcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaagaaacactt 133  Q
    |||||||||||||| |||||| || |||||||||| ||||||||||| |||||||||||| |  |||||||| |||| |||||| ||||    
T  1540631 attcctttgagtgaaatttcagtggagcaactaatgagtgaagaactcaaagcattattttatattgggaactcttgaaagaaatactt 1540543  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 1556688 - 1556595
Alignment:
Q  33 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaaga 126  Q
    ||||||||||| |||||||||||||| |||||| || | |||||||| ||||||||||| || ||||||||| |  ||| ||||||||| ||||    
T  1556688 acaccattaagcattcctttgagtgaaatttcagtgcaacaactaatgagtgaagaactcaatgcattattttatattgagaacccttgaaaga 1556595  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 134
Target Start/End: Complemental strand, 1563944 - 1563843
Alignment:
Q  33 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaagaaacact 132  Q
    ||||| |||||  ||||||||||||| |||||| || |||||||||| |||||||||||  ||||||||||| |  |||||| |||||| |||||| |||    
T  1563944 acaccgttaagccttcctttgagtgaaatttcagtgcagcaactaatgagtgaagaactcgaagcattattttatattgggaccccttgaaagaaaaact 1563845  T
Q  133 tc 134  Q
    ||    
T  1563844 tc 1563843  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 1605256 - 1605359
Alignment:
Q  32 cacaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaagaaacac 131  Q
    |||||||||||| |||||||||||||| |||||| || | ||||| || ||| ||||||| |||| ||||||| |  |||||||||| || |||||| ||    
T  1605256 cacaccattaagcattcctttgagtgaaatttcagtgcaacaactcatgagtcaagaactgaaaggattattttatattgggaacccctgaaagaaaaac 1605355  T
Q  132 ttca 135  Q
    ||||    
T  1605356 ttca 1605359  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 2322189 - 2322262
Alignment:
Q  33 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttca 106  Q
    ||||||||||| |||||||||||||| |||||  || ||||||| || ||| ||||| ||||||||||||||||    
T  2322189 acaccattaagcattcctttgagtgaaatttctgtgcagcaactgatgagtcaagaattaaaagcattatttca 2322262  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 1597283 - 1597351
Alignment:
Q  33 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcatta 101  Q
    ||||||||||| |||||||||||||| |||||  || |||||||||| ||||||||||| | |||||||    
T  1597283 acaccattaagcattcctttgagtgaaatttccgtgcagcaactaatgagtgaagaactcagagcatta 1597351  T

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Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 104
Target Start/End: Original strand, 1089530 - 1089601
Alignment:
Q  33 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattattt 104  Q
    ||||||||||| | |||||||||||| ||||||||| |||||||  | ||| ||||||| ||||||||||||    
T  1089530 acaccattaagaactcctttgagtgaaatttcaatgcagcaactcttgagtcaagaactcaaagcattattt 1089601  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 2326479 - 2326563
Alignment:
Q  33 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacc 117  Q
    ||||||| |||||||| || |||||| |||||| || ||||||| || ||| |||||||||||  ||||||||| || |||||||    
T  2326479 acaccatcaagtattctttcgagtgaaatttcagtgcagcaactcatgagtcaagaactaaaaatattatttcatgtcgggaacc 2326563  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 1106869 - 1106972
Alignment:
Q  32 cacaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaagaaacac 131  Q
    |||||||||||| |||||||||||||| |||||| || | ||||| |   || ||||||| |||| ||||||| |  |||||||||| || |||||| ||    
T  1106869 cacaccattaagcattcctttgagtgaaatttcagtgcaacaactcacgggtcaagaactgaaaggattattttatattgggaacccctgaaagaaaaac 1106968  T
Q  132 ttca 135  Q
    ||||    
T  1106969 ttca 1106972  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 3954440 - 3954367
Alignment:
Q  33 acaccattaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttca 106  Q
    ||||||||||| ||||||||||| || |||||| || |||||||  | | | ||||||| ||||||||||||||    
T  3954440 acaccattaagcattcctttgagagaaatttcagtgaagcaactcgtgaatcaagaactcaaagcattatttca 3954367  T

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Target: scaffold0491 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 5290 - 5202
Alignment:
Q  38 attaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaaga 126  Q
    ||||||||||||||| ||||| |||||| || |||||||||| ||||||||||| |||||||| ||| |  ||| ||||||||| ||||    
T  5290 attaagtattcctttcagtgaaatttcagtgcagcaactaatgagtgaagaactcaaagcattgttttatattgcgaacccttgaaaga 5202  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 18738518 - 18738419
Alignment:
Q  38 attaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaagaaacacttcaga 137  Q
    ||||||||||||||| ||||| |||||| || |||||||||| ||||||||||| |||||||| |||    ||| ||||||||| |||||| ||||||||    
T  18738518 attaagtattcctttcagtgaaatttcagtgcagcaactaatgagtgaagaacttaaagcattgttttgtattgcgaacccttgaaagaaa-acttcaga 18738420  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 18743482 - 18743383
Alignment:
Q  38 attaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaagaaacacttcaga 137  Q
    ||||||||||||||| ||||| |||||| || |||||||||| ||||||||||| |||||||| |||    ||| ||||||||| |||||| ||||||||    
T  18743482 attaagtattcctttcagtgaaatttcagtgcagcaactaatgagtgaagaacttaaagcattgttttgtattgcgaacccttgaaagaaa-acttcaga 18743384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 18748449 - 18748361
Alignment:
Q  38 attaagtattcctttgagtgatatttcaatgtagcaactaattagtgaagaactaaaagcattatttcacgttgggaacccttgcaaga 126  Q
    ||||||||||||||| ||||| |||||| || |||||||||| ||||||||||| |||||||| ||| |  ||| ||||||||| ||||    
T  18748449 attaagtattcctttcagtgaaatttcagtgcagcaactaatgagtgaagaactcaaagcattgttttatattgcgaacccttgaaaga 18748361  T

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