View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21675_high_10 (Length: 380)
Name: NF21675_high_10
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 185 - 369
Target Start/End: Complemental strand, 8196610 - 8196426
Alignment:
| Q |
185 |
cctcacaagaataacatgaattcaaatttgtctgctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8196610 |
cctcacaagaataacatgaattcaaatttgtcagctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
8196511 |
T |
|
| Q |
285 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatg-atgtccatctcattgc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
8196510 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatgtatg-ccatctcattgc |
8196426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 185 - 369
Target Start/End: Complemental strand, 8201370 - 8201186
Alignment:
| Q |
185 |
cctcacaagaataacatgaattcaaatttgtctgctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8201370 |
cctcacaagaataacatgaattcaaatttgtcagctaaagtaaagaattatcatgctggcattgacaaactgatatattaattaccatccaatgtagcat |
8201271 |
T |
|
| Q |
285 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatg-atgtccatctcattgc |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
8201270 |
gcgtacaggacaaacaaataacagagtcaaacttggaaagacatggacagggcagtctcaatatagatgtatg-ccatctcattgc |
8201186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 8196847 - 8196682
Alignment:
| Q |
19 |
catcacccagcataaaggttattcaacagaataaggttggccgcagatggtcatgaaccagaagcaacagaaacaaatagttaatagattgatgaaaaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8196847 |
catcacccagcataaaggttattcaacagaataaggttggcagcagatggtcatgaatcagaagcaacagaaacaaatagttaatagattgatgaaaaac |
8196748 |
T |
|
| Q |
119 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8196747 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
8196682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 8201607 - 8201442
Alignment:
| Q |
19 |
catcacccagcataaaggttattcaacagaataaggttggccgcagatggtcatgaaccagaagcaacagaaacaaatagttaatagattgatgaaaaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8201607 |
catcacccagcataaaggttattcaacagaataaggttggcagcagatggtcatgaatcagaagcaacagaaacaaatagttaatagattgatgaaaaac |
8201508 |
T |
|
| Q |
119 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8201507 |
atatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaagctg |
8201442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 4918040 - 4918121
Alignment:
| Q |
99 |
ttaatagattgatgaaaaacatatgaattaaagcatggagcaaaagttgaaattagaaaatttccaactttgcataaaggaa |
180 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| |||||| |
|
|
| T |
4918040 |
ttaataggtcgatgaaaaacatatgaattaaagcatggagcaaaagttgatattagaaagtttgcaactttgcattaaggaa |
4918121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University