View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21675_high_14 (Length: 374)
Name: NF21675_high_14
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 22 - 207
Target Start/End: Original strand, 45509731 - 45509916
Alignment:
| Q |
22 |
catcatcatcgtcgtcattaacaacaaaatcaactgacgcaccagtctcctccccatcttttgcatgctcagcatcaaaaaattcatcatcgtcaccatc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45509731 |
catcatcatcgtcgtcattaacaacaaaatcaactgacgcaccagtctcctccccatcttttgcatgctcagcatcaaaaaattcatcatcgtcaccatc |
45509830 |
T |
|
| Q |
122 |
atcattcagctcaaccccatttgcactctcctcatctgcaacattaagactgtctcgaatcctctcctccaaatcatcaaccctaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45509831 |
atcattcagctcaaccccatttgcactctcctcatctgcaacattaagactgtctcgaatcctctcctccaaatcatcaaccctaa |
45509916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 45509981 - 45510069
Alignment:
| Q |
272 |
atccacctcagcttctaactcctcttcatcatcaagtgaatccttgaactcggcaactttctccttatgcttcttactctgctgatgat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45509981 |
atccacctcagcttctaactcctcttcatcatcaagtgaatccttgaactcggcaactttctccttatgcttcttactctgctcatgat |
45510069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University