View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21675_high_15 (Length: 374)
Name: NF21675_high_15
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 158 - 354
Target Start/End: Complemental strand, 18044370 - 18044174
Alignment:
| Q |
158 |
ctcaccaaccaagcgagtagagtcaagccttggcttattgatctcatcagacttagataaagtcaacccatattgatgaattagaaacctatcgtataga |
257 |
Q |
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| T |
18044370 |
ctcaccaaccaagcgagtagagtcaagcctttgcttgttgatctcttcagacttagacaaagtcaacccatattgatgaattagaaagctattgtctaga |
18044271 |
T |
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| Q |
258 |
acaacccttgtacttaagcaaacagttatcttgttcatgctttcagttgcaatcgaacagctcatactctcaacaacttggaaagtggtgatgatgt |
354 |
Q |
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| T |
18044270 |
acaacccttgtacttaagtgaaaggttatctttttcttgtttccagttgcaatcgaacaactcatactctcaacaacttggaaagtggtgatgatgt |
18044174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 18044508 - 18044453
Alignment:
| Q |
20 |
acatcatcagagacacactcgtaatgcagcgcagtcaaaagaccaatgaaatcttt |
75 |
Q |
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| T |
18044508 |
acatcatcagagacacactcgtaatgcagcgcagtcaacaaaccaatgaaatcttt |
18044453 |
T |
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