View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21675_high_16 (Length: 371)
Name: NF21675_high_16
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 22 - 230
Target Start/End: Complemental strand, 51008596 - 51008384
Alignment:
| Q |
22 |
catcatcatcaaaatatttagatcatatgcatacataaaacagcttata----ccaaaaatattatctaagcaaatcaagtagaaacaaagttgcttata |
117 |
Q |
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| T |
51008596 |
catcatcatcaaaatatttagatcatatgcatacataaaacagcttatatataccaaaaatattatctaagcaaatcaagtagaaacaaatttgcttata |
51008497 |
T |
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| Q |
118 |
ccaatgaatgtcttataagcatgatgcaactaattatcacaagaatattatcttgtttatatgcatatatattggaggctgttactatggtaggtgaagt |
217 |
Q |
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| T |
51008496 |
ccaatgaatgtcttataagcatgatgcaactaattatcacaagaatattatcttgtttatatgcatatatattggaggctgttactatggtaggtgaagt |
51008397 |
T |
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| Q |
218 |
gtagagggtgaat |
230 |
Q |
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||||||||||||| |
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| T |
51008396 |
gtagagggtgaat |
51008384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 259 - 348
Target Start/End: Complemental strand, 51008359 - 51008262
Alignment:
| Q |
259 |
taaataataattttgatttaattgattaatgtgttag--------gaaagaaaggaggcagaaaaatgaagatattataagattagttggtgatgatg |
348 |
Q |
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|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51008359 |
taaataataattttgatttatttaattaatgtgttagtttgttaggaaagaaaggaggcagaaaaatgaagatattataagattagttggtgatgatg |
51008262 |
T |
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