View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21675_high_19 (Length: 363)

Name: NF21675_high_19
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21675_high_19
NF21675_high_19
[»] scaffold0157 (2 HSPs)
scaffold0157 (30-363)||(12671-13004)
scaffold0157 (24-361)||(6742-7077)
[»] chr4 (5 HSPs)
chr4 (30-363)||(12507473-12507806)
chr4 (24-361)||(12513830-12514165)
chr4 (313-349)||(15253255-15253291)
chr4 (313-349)||(15261355-15261391)
chr4 (313-349)||(22109869-22109905)
[»] chr6 (3 HSPs)
chr6 (195-358)||(29685355-29685518)
chr6 (313-358)||(18447117-18447162)
chr6 (313-349)||(24856513-24856549)
[»] chr8 (5 HSPs)
chr8 (180-350)||(22903286-22903456)
chr8 (313-349)||(8313377-8313413)
chr8 (313-349)||(8324120-8324156)
chr8 (285-349)||(22098104-22098168)
chr8 (313-349)||(22100894-22100930)
[»] chr7 (5 HSPs)
chr7 (273-344)||(20107145-20107216)
chr7 (313-349)||(8716773-8716809)
chr7 (313-349)||(14550005-14550041)
chr7 (313-349)||(18286534-18286570)
chr7 (313-349)||(48803128-48803164)
[»] chr3 (9 HSPs)
chr3 (278-349)||(10145885-10145956)
chr3 (278-349)||(13137438-13137509)
chr3 (313-349)||(3340488-3340524)
chr3 (313-349)||(7599265-7599301)
chr3 (313-349)||(13196698-13196734)
chr3 (313-349)||(13505784-13505820)
chr3 (313-349)||(13693788-13693824)
chr3 (313-349)||(15630225-15630261)
chr3 (313-349)||(16374748-16374784)
[»] chr2 (5 HSPs)
chr2 (314-349)||(116414-116449)
chr2 (313-349)||(22045929-22045965)
chr2 (313-349)||(25356421-25356457)
chr2 (313-349)||(27626503-27626539)
chr2 (313-349)||(27770070-27770106)
[»] chr1 (3 HSPs)
chr1 (273-336)||(16383575-16383638)
chr1 (313-349)||(20236390-20236426)
chr1 (313-349)||(20392401-20392437)
[»] scaffold1184 (1 HSPs)
scaffold1184 (313-351)||(385-423)
[»] scaffold1571 (1 HSPs)
scaffold1571 (313-349)||(1531-1567)
[»] scaffold0974 (1 HSPs)
scaffold0974 (313-349)||(33-69)
[»] scaffold0577 (1 HSPs)
scaffold0577 (313-349)||(5015-5051)
[»] scaffold0346 (1 HSPs)
scaffold0346 (313-349)||(4860-4896)
[»] scaffold0216 (1 HSPs)
scaffold0216 (313-349)||(10326-10362)
[»] scaffold0022 (1 HSPs)
scaffold0022 (313-349)||(24479-24515)
[»] scaffold0004 (1 HSPs)
scaffold0004 (313-349)||(253154-253190)
[»] chr5 (5 HSPs)
chr5 (313-349)||(15734443-15734479)
chr5 (313-349)||(20621072-20621108)
chr5 (313-349)||(22318753-22318789)
chr5 (313-349)||(23746960-23746996)
chr5 (313-349)||(25008052-25008088)


Alignment Details
Target: scaffold0157 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 363
Target Start/End: Original strand, 12671 - 13004
Alignment:
Q  30 taatgttatttgttaggccttatggtgcgccccaaaatttcacttatgagctgaaattcaacatgactcaaactttgtttattctgcctaacccggctag 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  12671 taatgttatttgttaggccttatggtgcgccccaaaatttcacttatgagctgaaagtcaacatgactcaaactttgtttattctacctaacccggctag 12770  T
Q  130 aactaacacgggggtggcagaaaatttgctataagatgttgataacccacaggtacaccaagaccatggtgatgatgatgaggaggaagatgaacacttg 229  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12771 aactaacacgggggtggcagaaaatttgctatatgatgttgctaacccacaggtacaccaagaccatggtgatgatgatgaggaggaagatgaacacttg 12870  T
Q  230 caggatgatccggtgcaacatgtcgaaaaagccggtgggcagtatgataatgatcgatgggcatggatgcacatagaaattcgaaggataagcatcgagc 329  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||| ||||    
T  12871 caagatgatccggtgcaacatgtcgaaaaagccggtgggcagtatgataatgatcgatgggtatggatgcacacagaaattcaaaggatgagcattgagc 12970  T
Q  330 aacaaaggcaaggtgctgaaatctcagggttgcg 363  Q
    ||||||||||||||||||||||||||||||||||    
T  12971 aacaaaggcaaggtgctgaaatctcagggttgcg 13004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 24 - 361
Target Start/End: Complemental strand, 7077 - 6742
Alignment:
Q  24 tcatcataatgttatttgttaggccttatggtgcgccccaaaatttcacttatgagctgaaattcaacatgactcaaactttgtttattctgcctaaccc 123  Q
    ||||| ||||||| |||||||||| | || |||||| ||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  7077 tcatcctaatgttctttgttaggcat-atagtgcgcaccaaaatctcacttatgagctgaaagtcaaaaggactcaaactttgtttattctgcctaaccc 6979  T
Q  124 ggctagaactaacacgggggtggcagaaaatttgctataagatgttgataacccacaggtacaccaagaccatggtgatgatgatgaggaggaagatgaa 223  Q
     ||||||| | |||||||||||||||||||||| ||||| | ||||| |||||||||||||||  |||||||||||||||||||||||||||||| || |    
T  6978 agctagaattgacacgggggtggcagaaaattttctatatgttgttgctaacccacaggtacaaaaagaccatggtgatgatgatgaggaggaaggtg-a 6880  T
Q  224 cacttgcaggatgatccggtgcaacatgtcgaaaaagccggtgggcagtatgataatgatcgatgggcatggatgcacatagaaattcgaaggataagca 323  Q
    |||||| |||||||||  |||||||||| | |  |||| |||||||||||||||||||||| | ||||||||||| |||  | ||||| |||||| ||||    
T  6879 cacttgtaggatgatctagtgcaacatgaccacgaagctggtgggcagtatgataatgatc-aggggcatggatgtacactggaattcaaaggatgagca 6781  T
Q  324 tcgagcaacaaaggc-aaggtgctgaaatctcagggttg 361  Q
     | ||||||||||||   |||||||||||||||||||||    
T  6780 ccaagcaacaaaggcggtggtgctgaaatctcagggttg 6742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 30 - 363
Target Start/End: Complemental strand, 12507806 - 12507473
Alignment:
Q  30 taatgttatttgttaggccttatggtgcgccccaaaatttcacttatgagctgaaattcaacatgactcaaactttgtttattctgcctaacccggctag 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  12507806 taatgttatttgttaggccttatggtgcgccccaaaatttcacttatgagctgaaagtcaacatgactcaaactttgtttattctacctaacccggctag 12507707  T
Q  130 aactaacacgggggtggcagaaaatttgctataagatgttgataacccacaggtacaccaagaccatggtgatgatgatgaggaggaagatgaacacttg 229  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12507706 aactaacacgggggtggcagaaaatttgctatatgatgttgctaacccacaggtacaccaagaccatggtgatgatgatgaggaggaagatgaacacttg 12507607  T
Q  230 caggatgatccggtgcaacatgtcgaaaaagccggtgggcagtatgataatgatcgatgggcatggatgcacatagaaattcgaaggataagcatcgagc 329  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| ||||| ||||    
T  12507606 caagatgatccggtgcaacatgtcgaaaaagccggtgggcagtatgataatgatcgatgggtatggatgcacacagaaattcaaaggatgagcattgagc 12507507  T
Q  330 aacaaaggcaaggtgctgaaatctcagggttgcg 363  Q
    ||||||||||||||||||||||||||||||||||    
T  12507506 aacaaaggcaaggtgctgaaatctcagggttgcg 12507473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 24 - 361
Target Start/End: Original strand, 12513830 - 12514165
Alignment:
Q  24 tcatcataatgttatttgttaggccttatggtgcgccccaaaatttcacttatgagctgaaattcaacatgactcaaactttgtttattctgcctaaccc 123  Q
    ||||| ||||||| |||||||||| | || |||||| ||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  12513830 tcatcctaatgttctttgttaggcat-atagtgcgcaccaaaatctcacttatgagctgaaagtcaaaaggactcaaactttgtttattctgcctaaccc 12513928  T
Q  124 ggctagaactaacacgggggtggcagaaaatttgctataagatgttgataacccacaggtacaccaagaccatggtgatgatgatgaggaggaagatgaa 223  Q
     ||||||| | |||||||||||||||||||||| ||||| | ||||| |||||||||||||||  |||||||||||||||||||||||||||||| || |    
T  12513929 agctagaattgacacgggggtggcagaaaattttctatatgttgttgctaacccacaggtacaaaaagaccatggtgatgatgatgaggaggaaggtg-a 12514027  T
Q  224 cacttgcaggatgatccggtgcaacatgtcgaaaaagccggtgggcagtatgataatgatcgatgggcatggatgcacatagaaattcgaaggataagca 323  Q
    |||||| |||||||||  |||||||||| | |  |||| |||||||||||||||||||||| | ||||||||||| |||  | ||||| |||||| ||||    
T  12514028 cacttgtaggatgatctagtgcaacatgaccacgaagctggtgggcagtatgataatgatc-aggggcatggatgtacactggaattcaaaggatgagca 12514126  T
Q  324 tcgagcaacaaaggc-aaggtgctgaaatctcagggttg 361  Q
     | ||||||||||||   |||||||||||||||||||||    
T  12514127 ccaagcaacaaaggcggtggtgctgaaatctcagggttg 12514165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 15253255 - 15253291
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  15253255 aaggataagcaccgagcaacaaaggcaaggtgttgaa 15253291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 15261391 - 15261355
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  15261391 aaggataagcaccgagcaacaaaggcaaggtgttgaa 15261355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 22109869 - 22109905
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  22109869 aaggataagcaccgagcaacaaaggcaaggtgttgaa 22109905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 358
Target Start/End: Original strand, 29685355 - 29685518
Alignment:
Q  195 atggtgatgatgatgaggaggaagatgaacacttgcaggatgatccggtgcaacatgtcgaaaaagccggtgggcagtatgataatgatcgatgggcatg 294  Q
    ||||||||||||| |||||||||| || ||| ||||| |||||||| ||||| || |  ||| ||| ||||||||| |||||||||||||  ||||||||    
T  29685355 atggtgatgatgaggaggaggaaggtgcacatttgcatgatgatccagtgcaccacgatgaagaagtcggtgggcaatatgataatgatcagtgggcatg 29685454  T
Q  295 gatgcacatagaaattcgaaggataagcatcgagcaacaaaggcaaggtgctgaaatctcaggg 358  Q
    |||||| |  ||| ||| |||||||| || |||||||||||| ||||||| |||||||||||||    
T  29685455 gatgcaaaccgaagttcaaaggataatcaccgagcaacaaagacaaggtgttgaaatctcaggg 29685518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 18447117 - 18447162
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaaatctcaggg 358  Q
    ||||||||||| |||||||||||||||||||| |||| | ||||||    
T  18447117 aaggataagcaccgagcaacaaaggcaaggtgttgaattatcaggg 18447162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 24856549 - 24856513
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  24856549 aaggataagcaccgagcaacaaaggcaaggtgttgaa 24856513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 180 - 350
Target Start/End: Original strand, 22903286 - 22903456
Alignment:
Q  180 aggtacaccaagaccatggtgatgatgatgaggaggaagatgaacacttgcaggatgatccggtgcaacatgtcgaaaaagccggtgggcagtatgataa 279  Q
    |||||||||||||||||||| ||||||| || || |||| ||| |||||||| |||||||||||||| |||| | || |||||||||| || ||||| ||    
T  22903286 aggtacaccaagaccatggtaatgatgaagatgaagaaggtgagcacttgcaagatgatccggtgcaccatgaccaagaagccggtggacaatatgacaa 22903385  T
Q  280 tgatcgatgggcatggatgcacatagaaattcgaaggataagcatcgagcaacaaaggcaaggtgctgaaa 350  Q
     ||||| ||| |||||||||| |  ||||| | ||| |||||||  ||||||||||| |||||||||||||    
T  22903386 ggatcggtggacatggatgcaaaacgaaatccaaagaataagcactgagcaacaaagacaaggtgctgaaa 22903456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 8313377 - 8313413
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  8313377 aaggataagcaccgagcaacaaaggcaaggtgttgaa 8313413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 8324156 - 8324120
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  8324156 aaggataagcaccgagcaacaaaggcaaggtgttgaa 8324120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 349
Target Start/End: Original strand, 22098104 - 22098168
Alignment:
Q  285 gatgggcatggatgcacatagaaattcgaaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    |||||||||||||||| || ||  | | |||||||||||  ||||||||||||||||||| ||||    
T  22098104 gatgggcatggatgcaaatcgaggtacaaaggataagcactgagcaacaaaggcaaggtgttgaa 22098168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 22100930 - 22100894
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  22100930 aaggataagcaccgagcaacaaaggcaaggtgttgaa 22100894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 273 - 344
Target Start/End: Original strand, 20107145 - 20107216
Alignment:
Q  273 atgataatgatcgatgggcatggatgcacatagaaattcgaaggataagcatcgagcaacaaaggcaaggtg 344  Q
    ||||||||||  ||||||||||||||||||||||  ||   |||||||||| || |||||||||||||||||    
T  20107145 atgataatgaaagatgggcatggatgcacatagaggttgagaggataagcaccgtgcaacaaaggcaaggtg 20107216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 8716773 - 8716809
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  8716773 aaggataagcaccgagcaacaaaggcaaggtgttgaa 8716809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 14550005 - 14550041
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  14550005 aaggataagcaccgagcaacaaaggcaaggtgttgaa 14550041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 18286534 - 18286570
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  18286534 aaggataagcaccgagcaacaaaggcaaggtgttgaa 18286570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 48803164 - 48803128
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  48803164 aaggataagcaccgagcaacaaaggcaaggtgttgaa 48803128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 10145885 - 10145956
Alignment:
Q  278 aatgatcgatgggcatggatgcacatagaaattcgaaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||| ||||||||||||||||| |  ||  | | ||||||||||| |||||||||||||||||||| ||||    
T  10145885 aatgaacgatgggcatggatgcaaaccgaggtacaaaggataagcaccgagcaacaaaggcaaggtgttgaa 10145956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 13137509 - 13137438
Alignment:
Q  278 aatgatcgatgggcatggatgcacatagaaattcgaaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||| ||||||||||||||||| |  ||  | | ||||||||||| |||||||||||||||||||| ||||    
T  13137509 aatgaacgatgggcatggatgcaaaccgaggtacaaaggataagcaccgagcaacaaaggcaaggtgttgaa 13137438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 3340524 - 3340488
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  3340524 aaggataagcaccgagcaacaaaggcaaggtgttgaa 3340488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 7599265 - 7599301
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  7599265 aaggataagcaccgagcaacaaaggcaaggtgttgaa 7599301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 13196734 - 13196698
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  13196734 aaggataagcaccgagcaacaaaggcaaggtgttgaa 13196698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 13505820 - 13505784
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  13505820 aaggataagcaccgagcaacaaaggcaaggtgttgaa 13505784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 13693788 - 13693824
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  13693788 aaggataagcaccgagcaacaaaggcaaggtgttgaa 13693824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 15630261 - 15630225
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  15630261 aaggataagcaccgagcaacaaaggcaaggtgttgaa 15630225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 16374784 - 16374748
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  16374784 aaggataagcaccgagcaacaaaggcaaggtgttgaa 16374748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 314 - 349
Target Start/End: Original strand, 116414 - 116449
Alignment:
Q  314 aggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||||||||||||||||||||||| ||||    
T  116414 aggataagcatcgagcaacaaaggcaaggtgttgaa 116449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 22045965 - 22045929
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  22045965 aaggataagcaccgagcaacaaaggcaaggtgttgaa 22045929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 25356421 - 25356457
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  25356421 aaggataagcaccgagcaacaaaggcaaggtgttgaa 25356457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 27626503 - 27626539
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  27626503 aaggataagcaccgagcaacaaaggcaaggtgttgaa 27626539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 27770106 - 27770070
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  27770106 aaggataagcaccgagcaacaaaggcaaggtgttgaa 27770070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 336
Target Start/End: Complemental strand, 16383638 - 16383575
Alignment:
Q  273 atgataatgatcgatgggcatggatgcacatagaaattcgaaggataagcatcgagcaacaaag 336  Q
    |||| ||||||||||||||||||||||| |  ||||| | ||||||||||| | ||||||||||    
T  16383638 atgacaatgatcgatgggcatggatgcaaaccgaaatccaaaggataagcaccaagcaacaaag 16383575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 20236390 - 20236426
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  20236390 aaggataagcaccgagcaacaaaggcaaggtgttgaa 20236426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 20392401 - 20392437
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  20392401 aaggataagcaccgagcaacaaaggcaaggtgttgaa 20392437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1184 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1184
Description:

Target: scaffold1184; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 351
Target Start/End: Complemental strand, 423 - 385
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaaat 351  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  423 aaggataagcaccgagcaacaaagacaaggtgctgaaat 385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1571 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1571
Description:

Target: scaffold1571; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 1531 - 1567
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  1531 aaggataagcaccgagcaacaaaggcaaggtgttgaa 1567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 33 - 69
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  33 aaggataagcaccgagcaacaaaggcaaggtgttgaa 69  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 5015 - 5051
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  5015 aaggataagcaccgagcaacaaaggcaaggtgttgaa 5051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 4896 - 4860
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  4896 aaggataagcaccgagcaacaaaggcaaggtgttgaa 4860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 10326 - 10362
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  10326 aaggataagcaccgagcaacaaaggcaaggtgttgaa 10362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 24479 - 24515
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  24479 aaggataagcaccgagcaacaaaggcaaggtgttgaa 24515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 253190 - 253154
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  253190 aaggataagcaccgagcaacaaaggcaaggtgttgaa 253154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 15734443 - 15734479
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  15734443 aaggataagcaccgagcaacaaaggcaaggtgttgaa 15734479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 20621072 - 20621108
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  20621072 aaggataagcaccgagcaacaaaggcaaggtgttgaa 20621108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 22318789 - 22318753
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  22318789 aaggataagcaccgagcaacaaaggcaaggtgttgaa 22318753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 23746960 - 23746996
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  23746960 aaggataagcaccgagcaacaaaggcaaggtgttgaa 23746996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 25008088 - 25008052
Alignment:
Q  313 aaggataagcatcgagcaacaaaggcaaggtgctgaa 349  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  25008088 aaggataagcaccgagcaacaaaggcaaggtgttgaa 25008052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University