View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21675_high_2 (Length: 420)

Name: NF21675_high_2
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21675_high_2
NF21675_high_2
[»] chr7 (32 HSPs)
chr7 (9-420)||(8325212-8325629)
chr7 (242-393)||(15755927-15756078)
chr7 (105-168)||(4437495-4437558)
chr7 (105-168)||(4444896-4444959)
chr7 (221-393)||(3172163-3172332)
chr7 (105-167)||(16382178-16382240)
chr7 (247-347)||(16436408-16436508)
chr7 (105-173)||(45148204-45148272)
chr7 (107-168)||(14939426-14939487)
chr7 (107-168)||(15367019-15367080)
chr7 (105-165)||(33558343-33558403)
chr7 (105-168)||(9609889-9609952)
chr7 (105-168)||(9837461-9837524)
chr7 (105-168)||(31499852-31499915)
chr7 (105-168)||(48353987-48354050)
chr7 (105-167)||(34242595-34242657)
chr7 (113-173)||(16207054-16207114)
chr7 (105-168)||(16921406-16921469)
chr7 (85-281)||(26427125-26427328)
chr7 (103-287)||(6461265-6461456)
chr7 (221-278)||(16195656-16195712)
chr7 (251-287)||(13460840-13460876)
chr7 (129-165)||(16918234-16918270)
chr7 (129-168)||(17225410-17225449)
chr7 (105-135)||(15979563-15979593)
chr7 (242-287)||(9128922-9128967)
chr7 (242-287)||(39293366-39293411)
chr7 (247-287)||(6210575-6210615)
chr7 (251-287)||(12246474-12246510)
chr7 (251-287)||(14252968-14253004)
chr7 (247-287)||(14278128-14278168)
chr7 (251-287)||(45148083-45148119)
[»] chr8 (21 HSPs)
chr8 (9-393)||(18032750-18033138)
chr8 (249-392)||(23543826-23543970)
chr8 (105-168)||(19333110-19333173)
chr8 (108-168)||(24554068-24554128)
chr8 (105-199)||(26010062-26010153)
chr8 (105-168)||(29296543-29296606)
chr8 (105-168)||(7468891-7468954)
chr8 (108-167)||(15931973-15932032)
chr8 (105-168)||(24266646-24266709)
chr8 (105-168)||(23227506-23227569)
chr8 (247-348)||(31195907-31196008)
chr8 (128-199)||(17265504-17265572)
chr8 (242-290)||(24623307-24623355)
chr8 (129-168)||(17283914-17283953)
chr8 (247-282)||(24906446-24906481)
chr8 (251-287)||(16041171-16041207)
chr8 (251-287)||(16042847-16042883)
chr8 (251-287)||(17500518-17500554)
chr8 (251-287)||(18610760-18610796)
chr8 (251-287)||(25608642-25608678)
chr8 (136-168)||(38637167-38637199)
[»] scaffold0282 (1 HSPs)
scaffold0282 (9-215)||(20358-20565)
[»] scaffold0333 (1 HSPs)
scaffold0333 (9-202)||(1381-1572)
[»] scaffold0005 (2 HSPs)
scaffold0005 (9-199)||(199433-199623)
scaffold0005 (247-281)||(200826-200860)
[»] chr4 (25 HSPs)
chr4 (9-199)||(14617754-14617944)
chr4 (17-166)||(18420283-18420434)
chr4 (247-392)||(18667805-18667951)
chr4 (105-168)||(12732791-12732854)
chr4 (309-392)||(18713540-18713623)
chr4 (304-391)||(5889743-5889832)
chr4 (128-287)||(19076291-19076452)
chr4 (301-393)||(12415209-12415293)
chr4 (113-166)||(42707399-42707452)
chr4 (105-168)||(7187397-7187460)
chr4 (105-168)||(38763427-38763490)
chr4 (103-166)||(10115854-10115918)
chr4 (105-168)||(18275463-18275526)
chr4 (252-288)||(11774843-11774879)
chr4 (247-281)||(14616517-14616551)
chr4 (248-286)||(15676507-15676545)
chr4 (247-348)||(20847339-20847440)
chr4 (317-377)||(11774762-11774822)
chr4 (328-372)||(17957534-17957577)
chr4 (247-279)||(17958490-17958522)
chr4 (251-287)||(19699238-19699274)
chr4 (251-287)||(19709823-19709859)
chr4 (317-377)||(21958569-21958629)
chr4 (251-287)||(40902370-40902406)
chr4 (251-287)||(41918420-41918456)
[»] scaffold0205 (2 HSPs)
scaffold0205 (18-199)||(3879-4059)
scaffold0205 (143-281)||(4038-4176)
[»] chr3 (33 HSPs)
chr3 (249-376)||(8853552-8853679)
chr3 (85-287)||(27050239-27050443)
chr3 (105-173)||(17759919-17759987)
chr3 (105-173)||(19061239-19061307)
chr3 (252-420)||(10724842-10725016)
chr3 (242-372)||(16220351-16220481)
chr3 (241-392)||(13438448-13438600)
chr3 (107-168)||(17320068-17320129)
chr3 (105-168)||(4163673-4163736)
chr3 (105-168)||(18968736-18968799)
chr3 (105-168)||(43429026-43429089)
chr3 (105-167)||(21168206-21168268)
chr3 (253-361)||(19633441-19633550)
chr3 (105-168)||(4147166-4147229)
chr3 (105-168)||(14817185-14817248)
chr3 (105-168)||(25105454-25105517)
chr3 (105-168)||(6230122-6230188)
chr3 (112-167)||(34558515-34558570)
chr3 (129-168)||(12020605-12020644)
chr3 (129-168)||(17203320-17203359)
chr3 (221-287)||(2548038-2548105)
chr3 (242-287)||(11401079-11401124)
chr3 (247-287)||(17385351-17385391)
chr3 (247-287)||(54040208-54040248)
chr3 (247-287)||(54049495-54049535)
chr3 (221-283)||(12254393-12254453)
chr3 (247-281)||(6808921-6808955)
chr3 (248-286)||(25606936-25606974)
chr3 (251-288)||(31413915-31413952)
chr3 (128-168)||(15549172-15549212)
chr3 (251-287)||(15551132-15551168)
chr3 (247-287)||(17391840-17391880)
chr3 (247-287)||(25105585-25105625)
[»] scaffold0058 (1 HSPs)
scaffold0058 (119-376)||(79238-79493)
[»] chr6 (27 HSPs)
chr6 (242-393)||(1560297-1560448)
chr6 (105-290)||(5485823-5486007)
chr6 (105-173)||(4173162-4173230)
chr6 (105-173)||(4228771-4228839)
chr6 (105-173)||(29161995-29162063)
chr6 (105-168)||(32350720-32350783)
chr6 (105-168)||(15006140-15006203)
chr6 (105-173)||(11374336-11374404)
chr6 (241-371)||(19728996-19729127)
chr6 (105-168)||(29604207-29604270)
chr6 (109-173)||(17375241-17375305)
chr6 (105-168)||(18631100-18631163)
chr6 (184-281)||(24217359-24217457)
chr6 (301-348)||(10973245-10973292)
chr6 (241-290)||(12975025-12975074)
chr6 (129-168)||(21621781-21621820)
chr6 (129-168)||(22363687-22363726)
chr6 (85-166)||(14874942-14875023)
chr6 (129-171)||(25918331-25918373)
chr6 (105-135)||(31162373-31162403)
chr6 (247-287)||(12466181-12466221)
chr6 (251-287)||(16374881-16374917)
chr6 (108-136)||(16375036-16375064)
chr6 (251-287)||(19627830-19627866)
chr6 (251-287)||(22595128-22595164)
chr6 (251-287)||(31162523-31162559)
chr6 (251-287)||(35010948-35010984)
[»] chr5 (16 HSPs)
chr5 (105-173)||(21108171-21108239)
chr5 (105-168)||(26561277-26561340)
chr5 (105-168)||(6455319-6455382)
chr5 (105-168)||(29912698-29912761)
chr5 (105-167)||(5622919-5622981)
chr5 (87-281)||(37278075-37278276)
chr5 (221-341)||(25340876-25340995)
chr5 (105-168)||(24082755-24082818)
chr5 (241-342)||(19318119-19318220)
chr5 (301-348)||(19266820-19266867)
chr5 (247-282)||(33627894-33627929)
chr5 (248-286)||(18532420-18532458)
chr5 (248-286)||(22055384-22055422)
chr5 (247-287)||(14343509-14343549)
chr5 (251-287)||(16837014-16837050)
chr5 (251-287)||(34937951-34937987)
[»] chr1 (9 HSPs)
chr1 (105-173)||(33395960-33396028)
chr1 (105-167)||(49998806-49998868)
chr1 (109-168)||(40437764-40437823)
chr1 (105-168)||(46144415-46144478)
chr1 (129-168)||(17022213-17022252)
chr1 (108-159)||(52399275-52399326)
chr1 (247-288)||(21199241-21199282)
chr1 (251-287)||(20252698-20252734)
chr1 (251-287)||(33395840-33395876)
[»] scaffold0111 (1 HSPs)
scaffold0111 (9-135)||(23029-23159)
[»] chr2 (16 HSPs)
chr2 (105-168)||(25132827-25132890)
chr2 (128-215)||(34135778-34135865)
chr2 (111-172)||(20272008-20272069)
chr2 (105-165)||(6093474-6093534)
chr2 (105-168)||(19660978-19661041)
chr2 (105-168)||(24881247-24881310)
chr2 (240-348)||(18994703-18994810)
chr2 (247-288)||(24533278-24533319)
chr2 (9-110)||(34135674-34135777)
chr2 (129-168)||(9782416-9782455)
chr2 (129-168)||(40641786-40641825)
chr2 (248-286)||(24342999-24343037)
chr2 (251-348)||(45619705-45619803)
chr2 (251-287)||(7513687-7513723)
chr2 (251-287)||(22331166-22331202)
chr2 (251-287)||(42180034-42180070)
[»] scaffold1204 (1 HSPs)
scaffold1204 (105-167)||(1697-1759)
[»] scaffold0317 (2 HSPs)
scaffold0317 (105-173)||(15380-15448)
scaffold0317 (247-287)||(15512-15552)
[»] scaffold0003 (1 HSPs)
scaffold0003 (247-347)||(26038-26138)
[»] scaffold0357 (1 HSPs)
scaffold0357 (105-168)||(6379-6442)
[»] scaffold0253 (2 HSPs)
scaffold0253 (105-168)||(9996-10059)
scaffold0253 (105-168)||(19421-19484)
[»] scaffold0174 (2 HSPs)
scaffold0174 (105-172)||(21571-21638)
scaffold0174 (105-168)||(1226-1289)
[»] scaffold0107 (1 HSPs)
scaffold0107 (105-168)||(12084-12147)
[»] scaffold0006 (1 HSPs)
scaffold0006 (105-168)||(198841-198904)
[»] scaffold0031 (1 HSPs)
scaffold0031 (105-167)||(98643-98705)
[»] scaffold0013 (1 HSPs)
scaffold0013 (105-173)||(10846-10913)
[»] scaffold0387 (1 HSPs)
scaffold0387 (105-168)||(2427-2490)
[»] scaffold0047 (1 HSPs)
scaffold0047 (105-168)||(1558-1621)
[»] scaffold0024 (1 HSPs)
scaffold0024 (221-348)||(101086-101215)
[»] scaffold0017 (1 HSPs)
scaffold0017 (106-173)||(11226-11293)
[»] scaffold0021 (3 HSPs)
scaffold0021 (105-166)||(19259-19320)
scaffold0021 (105-166)||(23524-23585)
scaffold0021 (105-166)||(28835-28896)
[»] scaffold0219 (1 HSPs)
scaffold0219 (109-168)||(25432-25491)
[»] scaffold0175 (1 HSPs)
scaffold0175 (105-168)||(6643-6706)
[»] scaffold0032 (1 HSPs)
scaffold0032 (105-168)||(106095-106158)
[»] scaffold0028 (1 HSPs)
scaffold0028 (105-168)||(63949-64012)
[»] scaffold0412 (1 HSPs)
scaffold0412 (241-348)||(1624-1730)
[»] scaffold0009 (2 HSPs)
scaffold0009 (129-168)||(68148-68187)
scaffold0009 (242-287)||(256037-256082)
[»] scaffold0508 (1 HSPs)
scaffold0508 (241-290)||(5847-5896)
[»] scaffold0112 (1 HSPs)
scaffold0112 (105-136)||(12366-12397)
[»] scaffold0186 (1 HSPs)
scaffold0186 (247-348)||(11471-11573)
[»] scaffold0010 (1 HSPs)
scaffold0010 (130-168)||(29752-29790)
[»] scaffold0123 (1 HSPs)
scaffold0123 (221-287)||(33830-33897)
[»] scaffold1869 (1 HSPs)
scaffold1869 (221-281)||(801-860)
[»] scaffold0396 (1 HSPs)
scaffold0396 (251-287)||(171-207)
[»] scaffold0138 (3 HSPs)
scaffold0138 (251-287)||(26806-26842)
scaffold0138 (251-287)||(27821-27857)
scaffold0138 (251-287)||(39817-39853)
[»] scaffold0115 (1 HSPs)
scaffold0115 (251-287)||(20219-20255)


Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 8325212 - 8325629
Alignment:
Q  9 tggtgttgattatgaagaaatctaattggaggtgtacttttacattgtttgtgattatatagttggtgttagacggattgtcgagtcttacttgaagtcc 108  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8325212 tggtgttgattatgaagaaatgtaattggaggtgtacttttacattgttggtgattatatagttggtgttaaacggattgtcgagtcttacttgaagtcc 8325311  T
Q  109 atgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtg 208  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8325312 atgcatcatagtcatattaagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgggtgtg 8325411  T
Q  209 tattcaaactgt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtc 307  Q
     ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8325412 gattcaaactgtaaaattatcttcggactcc--tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactagtcgagtc 8325509  T
Q  308 atacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg-------cgattgtg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||| ||    
T  8325510 atacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgcattactcgattctg 8325609  T
Q  401 gttgtatacttgtggactta 420  Q
    ||||||||||||||||||||    
T  8325610 gttgtatacttgtggactta 8325629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 393
Target Start/End: Original strand, 15755927 - 15756078
Alignment:
Q  242 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 341  Q
    |||| |||||||| || |||| |||||||||||||||||  || || || ||| |  ||||||||||||||||||||||  |||| ||||||||||||||    
T  15755927 atggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaatatgcaaatcagtgtatatgtgcat 15756026  T
Q  342 tggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 393  Q
    |||||||| |||||||||||| |||||| |||||  ||||||||||||||||    
T  15756027 tggtgaatgtttggtgattgttgtgaattcttgagaaaagtgaattgtatgc 15756078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 4437558 - 4437495
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4437558 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggagatgtacttttacatag 4437495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 4444959 - 4444896
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4444959 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggagatgtacttttacatag 4444896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 221 - 393
Target Start/End: Original strand, 3172163 - 3172332
Alignment:
Q  221 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatg 320  Q
    ||||||||| |||| ||||||  || |||||||||||||||| |||| || |||||||||| |||||||  ||| |  | | ||||| ||||||| ||||    
T  3172163 aaattatctccggaatcctat--ggtaccacatgcatctagaagagtttaaaacattgcatgcatttatctattcatgagttgagtcgtacttgattatg 3172260  T
Q  321 tgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 393  Q
    |||||  || |||||||||||||||| | ||||||||||| | |||||||||||||||| || ||||||||||    
T  3172261 tgaatttgtatatatgtgcattggtg-acttttggtgatttttgtgaatacttgaacaatgttaattgtatgc 3172332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 16382240 - 16382178
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  16382240 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtactcttacata 16382178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 16436408 - 16436508
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 346  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  |||    | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  16436408 accacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttgattatgtgaatcggtgtatatgtgcattggtg 16436507  T
Q  347 a 347  Q
    |    
T  16436508 a 16436508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 45148272 - 45148204
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||    
T  45148272 gtccatgcatcatagtcatattaagtcatatgagaaatgtaaaaggaggtgtatttttacatagttgaa 45148204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 14939487 - 14939426
Alignment:
Q  107 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  14939487 ccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 14939426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 15367080 - 15367019
Alignment:
Q  107 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15367080 ccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 15367019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 33558403 - 33558343
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca 165  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  33558403 gtccatgcatcgtggtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttaca 33558343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 9609952 - 9609889
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  9609952 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatag 9609889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 9837524 - 9837461
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  9837524 gtccattcatcattgtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatag 9837461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 31499915 - 31499852
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||| |||||||||||||| |||| ||||||| ||||||||||||| |||||||||||||||    
T  31499915 gtccattcatcatagtcatatcgagttatatgagtaatgtaaaaggaggtgtacttttacatag 31499852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 48354050 - 48353987
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||| ||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  48354050 gtccatgtatcattgtcatatcgagtcatatgagaaatgtaaaaggatatgcacttttacatag 48353987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 34242595 - 34242657
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    |||||||||||   ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34242595 gtccatgcatctgtgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 34242657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 16207114 - 16207054
Alignment:
Q  113 atcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    ||||||| || ||||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  16207114 atcatagacaaattgagtcatatgagaaatgtaaaaggaggtgtaattttacatagttgaa 16207054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 16921406 - 16921469
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||| ||||||||||||||||  ||| |||||||||||    
T  16921406 gtccatgcatcattgtcatatcgagtcataagagaaatgtaaaaggatgtgttcttttacatag 16921469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 26427328 - 26427125
Alignment:
Q  85 attgtcgagtctt-acttgaagtccatgcat-catagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag-----gtgaaatac 177  Q
    ||||||||||||| |||| ||||| |||||| ||||||||||||||||| |||||  |||||||| | || | ||||||||| | |     || ||||||    
T  26427328 attgtcgagtctttacttaaagtctatgcattcatagtcatattgagtcttatgaataatgtaaatgaaggt-tacttttaccttgctttggtaaaatac 26427230  T
Q  178 atgggaggaggtgtactcttacgtgagtgtgtattcaaactg--taaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaaca 275  Q
    ||  | ||||||||||||||| ||| ||||| ||||||  ||   |||||||||||||| ||| || ||| ||||| ||||| |||| ||||||||||||    
T  26427229 ataagtggaggtgtactcttatgtgggtgtggattcaatatggtaaaattatcttcggaatccaat-tggtaccacgtgcatttagaagagtctagaaca 26427131  T
Q  276 ttgcat 281  Q
    ||||||    
T  26427130 ttgcat 26427125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 287
Target Start/End: Original strand, 6461265 - 6461456
Alignment:
Q  103 aagtccatgcatc-atagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca-----taggtgaaatacatgggaggaggtgtactct 196  Q
    ||||||||||||  |||||||| ||||||| |||||  |||||||| |||||||||||||||||     | |||||||||  |  | |||||||||||||    
T  6461265 aagtccatgcatttatagtcatgttgagtcttatgaagaatgtaaatggagatgtacttttacattgctttggtgaaatatgtaagtggaggtgtactct 6461364  T
Q  197 tacgtgagtgtgtattcaa-actg-taaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||| | ||| |||||| || |  |||||||||||||| ||  || ||| ||||||||||||| || ||||||| |||||| ||| |||||    
T  6461365 tacgtgggcgtggattcaatacggcaaaattatcttcggaatcgaat-tggtaccacatgcatcttgaagagtctaaaacatttcatgcattt 6461456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 278
Target Start/End: Complemental strand, 16195712 - 16195656
Alignment:
Q  221 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattg 278  Q
    |||||||| ||||| ||||| |||| ||||||||||||||||||||||||||| ||||    
T  16195712 aaattatcgtcggaatccta-atggtaccacatgcatctagatgagtctagaatattg 16195656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 13460876 - 13460840
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| ||||||||||||||||||||||||    
T  13460876 catgcatctagaagagtctagaacattgcatacattt 13460840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 16918270 - 16918234
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttaca 165  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16918270 gtcatatgagaaatgtaaaaggaggtgtacttttaca 16918234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 17225410 - 17225449
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  17225410 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 17225449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 135
Target Start/End: Original strand, 15979563 - 15979593
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatat 135  Q
    |||||||||||||||||||||||||||||||    
T  15979563 gtccatgcatcatagtcatattgagtcatat 15979593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 9128922 - 9128967
Alignment:
Q  242 atggcaccacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||| |||||||||||||||| ||||||||||||||| || |||||    
T  9128922 atggtaccacatgcatctagaagagtctagaacattgtatgcattt 9128967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 39293366 - 39293411
Alignment:
Q  242 atggcaccacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||| ||| |||||||||||| |||||||||||||||||| |||||    
T  39293366 atggtaccgcatgcatctagaagagtctagaacattgcatgcattt 39293411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 6210575 - 6210615
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||| ||||||||||| |||||||||||||||||| |||||    
T  6210575 accatatgcatctagaagagtctagaacattgcatgcattt 6210615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 12246510 - 12246474
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  12246510 catgcatctagaagagtctagaacattgcatgcattt 12246474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 14252968 - 14253004
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  14252968 catgcatctagaagagtctagaacattgcatgcattt 14253004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 14278128 - 14278168
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    ||||||||||| |||| |||||||||||||||||| |||||    
T  14278128 accacatgcatttagaagagtctagaacattgcatgcattt 14278168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 45148119 - 45148083
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  45148119 catgcatctagaagagtctagaacattgcatgcattt 45148083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 18033138 - 18032750
Alignment:
Q  9 tggtgttgattatgaagaaatctaattggaggtgtacttttacattgtttg--tgattatatagttggtgttagacggattgtcgagtcttacttgaagt 106  Q
    |||||||||||  |||  ||| |||||||||||||||||||||||||||||  || ||||||||||||||||||  | ||||||||||||||||||||||    
T  18033138 tggtgttgatttagaaagaatgtaattggaggtgtacttttacattgtttgggtggttatatagttggtgttaggtgcattgtcgagtcttacttgaagt 18033039  T
Q  107 ccatgca---tcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtga 203  Q
    |||||||   |||| ||||||||||||||||||| |||||||||| ||  |||||||||||||||||||||||| |  |||||||||||||||||||||     
T  18033038 ccatgcagcatcatggtcatattgagtcatatgaaaaatgtaaaatgaagtgtacttttacataggtgaaatacgtaagaggaggtgtactcttacgtgg 18032939  T
Q  204 gtgtgtattcaaactgt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatc 302  Q
    |||||  ||||||| || |||||||||   || | ||| |||| ||||||||||||||||||||||||||||||||||  ||||| || |||    | ||    
T  18032938 gtgtgggttcaaacggtaaaattatctcttgaat-cta-atggtaccacatgcatctagatgagtctagaacattgcacgcatttgttaattggtgagtc 18032841  T
Q  303 gagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 393  Q
    ||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||| || || |||||||||| || ||||||| |||||    
T  18032840 gagccatacttggatatgtgaatcggtgtatatgtgtattggtgaatgtttggtgatcgttgtcaatacttgaaaaaggtgaattatatgc 18032750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 249 - 392
Target Start/End: Original strand, 23543826 - 23543970
Alignment:
Q  249 cacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgcattggtga 347  Q
    |||||||||||||| |||||||||||||||||| || ||||| |||    | ||||||| | | |||||||||||||||||||||||||||||||| |||    
T  23543826 cacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcgagtccttatttgaatatgtgaatcggtgtatatgtgcattgttga 23543925  T
Q  348 atttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 392  Q
    | ||||||| ||||| ||| |||||||||||||||||||||||||    
T  23543926 acttttggtaattgttgtggatacttgaacaaagtgaattgtatg 23543970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 19333110 - 19333173
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19333110 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 19333173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 24554068 - 24554128
Alignment:
Q  108 catgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24554068 catgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 24554128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 26010153 - 26010062
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 199  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||   | |||  ||||||||||||||||||    
T  26010153 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttg---tgcataagaggaggtgtactcttac 26010062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 29296606 - 29296543
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29296606 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29296543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 7468954 - 7468891
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| | |||||||||||||    
T  7468954 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaacgaggtatacttttacatag 7468891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 15932032 - 15931973
Alignment:
Q  108 catgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    |||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  15932032 catgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 15931973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 24266709 - 24266646
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||| |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  24266709 gtccgtgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 24266646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 23227506 - 23227569
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||| || ||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  23227506 gtccatgcattatcgtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 23227569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 348
Target Start/End: Original strand, 31195907 - 31196008
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggt 345  Q
    |||||||||||||||| |||||||||||||||||| ||||| | | ||| |  | ||| |||||| |||||||||||| | ||| ||| |||||||||||    
T  31195907 accacatgcatctagaagagtctagaacattgcatgcatttgaataattgatgagtcgtgtcataattgaatatgtgacttggt-tatttgtgcattggt 31196005  T
Q  346 gaa 348  Q
    |||    
T  31196006 gaa 31196008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 199
Target Start/End: Complemental strand, 17265572 - 17265504
Alignment:
Q  128 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 199  Q
    ||||||||||||||||||||| ||| ||||||||||||||| ||   | |||  ||||||||||||||||||    
T  17265572 agtcatatgagaaatgtaaaaagaggtgtacttttacatagttg---ttcataagaggaggtgtactcttac 17265504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 24623355 - 24623307
Alignment:
Q  242 atggcaccacatgcatctagatgagtctagaacattgcatacatttatt 290  Q
    |||| |||||||||||||||| |||| ||||||||||||| ||||||||    
T  24623355 atggtaccacatgcatctagaagagtttagaacattgcatgcatttatt 24623307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 17283953 - 17283914
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  17283953 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 17283914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 24906481 - 24906446
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcata 282  Q
    |||||||||||| |||||||||||||||||||||||    
T  24906481 accacatgcatcaagatgagtctagaacattgcata 24906446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 16041171 - 16041207
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16041171 catgcatctagaagagtctagaacattgcatgcattt 16041207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 16042847 - 16042883
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16042847 catgcatctagaagagtctagaacattgcatgcattt 16042883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 17500554 - 17500518
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  17500554 catgcatctagaagagtctagaacattgcatgcattt 17500518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 18610796 - 18610760
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  18610796 catgcatctagaagagtctagaacattgcatgcattt 18610760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 25608678 - 25608642
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  25608678 catgcatctagaagagtctagaacattgcatgcattt 25608642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 38637167 - 38637199
Alignment:
Q  136 gagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||| |||||||||||||||    
T  38637167 gagaaatgtaaaaggaggtgtacttttacatag 38637199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 121; Significance: 7e-62; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 20358 - 20565
Alignment:
Q  9 tggtgttgatt-atgaagaaatctaattggaggtgtacttttacattgtttg-tgattatatagttggtgttagacggattgtcgagtcttacttgaagt 106  Q
    ||||||||||| |||||||| | |||||||||||||||||||| |||| ||| ||||||||||| | |||||||  | ||||||||||||||||||||||    
T  20358 tggtgttgatttatgaagaa-tgtaattggaggtgtacttttatattgcttggtgattatatagattgtgttaggtgcattgtcgagtcttacttgaagt 20456  T
Q  107 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |  |||||| | |||||||||||| |||    
T  20457 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacataggtgaaatacgtaagaggagttttactcttacgtgggtg 20556  T
Q  207 tgtattcaa 215  Q
    || ||||||    
T  20557 tggattcaa 20565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 1381 - 1572
Alignment:
Q  9 tggtgttgatt-atgaagaaatctaattggaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaag 105  Q
    ||||||||||| |||||||| | ||||| ||||||||||||||||||| ||  ||||||||||||||||||||||  | |||||||||||||    ||||    
T  1381 tggtgttgatttatgaagaa-tgtaattagaggtgtacttttacattgctttggtgattatatagttggtgttaggtgcattgtcgagtctt----gaag 1475  T
Q  106 tccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtg 202  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||    
T  1476 tccatgtatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacttaagaggaggtgtactcttacgtg 1572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 199433 - 199623
Alignment:
Q  9 tggtgttgattatgaagaaa-tctaattggaggtgtacttttacattgtttgt-gattatatagttggtgttagacggattgtcgagtcttacttgaagt 106  Q
    |||||||||||| ||| ||| | |||||||||||||||||||||||||||||  |||||||||||||||||||| || ||||||||||||||  ||| ||    
T  199433 tggtgttgattacgaataaaatgtaattggaggtgtacttttacattgtttggcgattatatagttggtgttaggcgcattgtcgagtcttatgtgacgt 199532  T
Q  107 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 199  Q
    ||||||||||  |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||||| ||||||    
T  199533 ccatgcatca--gtcatattgagtcatatgagaaatgtaaaatgaggtgtacctttacataggtgaaatacgtaggaggaggtgtaatcttac 199623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 200826 - 200860
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcat 281  Q
    |||||||||||||||| ||||||||||||||||||    
T  200826 accacatgcatctagaggagtctagaacattgcat 200860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 7e-53; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 14617944 - 14617754
Alignment:
Q  9 tggtgttgattatgaagaaa-tctaattggaggtgtacttttacattgtttgt-gattatatagttggtgttagacggattgtcgagtcttacttgaagt 106  Q
    |||||||||||| ||| ||| | |||||||||||||||||||||||||||||  |||||||||||||||||||| || ||||||||||||||  ||| ||    
T  14617944 tggtgttgattacgaataaaatgtaattggaggtgtacttttacattgtttggcgattatatagttggtgttaggcgcattgtcgagtcttatgtgacgt 14617845  T
Q  107 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 199  Q
    ||||||||||  |||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||| | |||||||||||| ||||||    
T  14617844 ccatgcatca--gtcatattgagtcatatgagaaatgtaaaatgaggtgtacctttacataggtgaaatacgtaggaggaggtgtaatcttac 14617754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 18420283 - 18420434
Alignment:
Q  17 attatgaagaaatctaattggaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgca- 113  Q
    ||||||||||| | ||||||||||||||||||||||||| ||  |||| |||||||||| ||||||  | |||||||||||||||||||||||||||||     
T  18420283 attatgaagaa-tgtaattggaggtgtacttttacattgctttggtgaatatatagttgatgttaggtgcattgtcgagtcttacttgaagtccatgcat 18420381  T
Q  114 tcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 166  Q
    |||||||||| ||||||| |||||  |||||||| |||| |||| ||||||||    
T  18420382 tcatagtcatgttgagtcttatgatgaatgtaaatggaggtgtaattttacat 18420434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 247 - 392
Target Start/End: Original strand, 18667805 - 18667951
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgcattggt 345  Q
    |||||||||||||||| |||| |||||||||||||  | |||||  ||    | ||||||| | ||||||||||||||||| || |||||||||||||||    
T  18667805 accacatgcatctagaagagtatagaacattgcatgtacttattacttggtgagtcgagtccttacttgaatatgtgaatcagtatatatgtgcattggt 18667904  T
Q  346 gaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 392  Q
    ||| ||||||||||||| ||||||||||| ||||  |||||| ||||    
T  18667905 gaacttttggtgattgttgtgaatacttgcacaagatgaattatatg 18667951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 12732854 - 12732791
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  12732854 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaagaaggtgtacttttacatag 12732791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 18713540 - 18713623
Alignment:
Q  309 tacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 392  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||  |||||| ||||    
T  18713540 tacttggatatgtgaatcggtatatatgtgcattggtgaacttttggtgattgttgtgaatacttgcacaagatgaattatatg 18713623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 5889832 - 5889743
Alignment:
Q  304 agtcatacttgaatat--gtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtat 391  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||| |||||||||| |||||||||||| ||| || |||||| ||||    
T  5889832 agtcatacttgaatatatgtgaatcagtgtatatgtgcattggtgaaattttggtgatcgtcgtgaatactcgaaaaaggtgaatagtat 5889743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 287
Target Start/End: Complemental strand, 19076452 - 19076291
Alignment:
Q  128 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa-actgtaa-att 225  Q
    ||||||||||| ||||||||||||| |||| |||||| || ||||||||| |  |||||| |||||||||| ||| ||||| |||||| || |||| |||    
T  19076452 agtcatatgaggaatgtaaaaggaggtgtatttttacgtatgtgaaatacgtaagaggagatgtactcttatgtgggtgtggattcaatacagtaatatt 19076353  T
Q  226 atcttcggactcctatatggcaccacatgcatct--agatgagtctagaacattgcatacattt 287  Q
    |||| |||| |||   |||| |||||||||||||  |||  ||||||||||||||||| |||||    
T  19076352 atctccggaatcc--aatggtaccacatgcatctaaagaaaagtctagaacattgcatgcattt 19076291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 12415293 - 12415209
Alignment:
Q  301 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 393  Q
    |||||||||||||| |||||||||||||||||||||||        |||||||||||||||| | ||||||| ||| ||||||||||||||||    
T  12415293 tcgagtcatacttggatatgtgaatcggtgtatatgtg--------aatttttggtgattgttgcgaatactcgaaaaaagtgaattgtatgc 12415209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 42707452 - 42707399
Alignment:
Q  113 atcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 166  Q
    ||||||||||||| |||||||||| ||||||||||||||| |||||||||||||    
T  42707452 atcatagtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacat 42707399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 7187397 - 7187460
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||  | ||||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  7187397 gtccatgcatattcgtcatatcgagtcatatgtgaaatggaaaaggagatgtacttttacatag 7187460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 38763490 - 38763427
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| |||||||   |||||||| ||||||||||||||| |||||||||||||||    
T  38763490 gtccatgcatcattgtcatatcatgtcatatgtgaaatgtaaaaggaggtgtacttttacatag 38763427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 10115854 - 10115918
Alignment:
Q  103 aagtccatgcat-catagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 166  Q
    |||||||||||| ||||||||||||||||| |||||  |||||||| |||| |||||||||||||    
T  10115854 aagtccatgcattcatagtcatattgagtcttatgaagaatgtaaatggaggtgtacttttacat 10115918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 18275526 - 18275463
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||| ||| || ||||||| ||||||||||| ||||| |||||||| |||||||||||||||    
T  18275526 gtccatacattattgtcatatcgagtcatatgataaatggaaaaggaggtgtacttttacatag 18275463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 11774879 - 11774843
Alignment:
Q  252 atgcatctagatgagtctagaacattgcatacattta 288  Q
    |||||||||||||||||||||||||||||| ||||||    
T  11774879 atgcatctagatgagtctagaacattgcatgcattta 11774843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 14616551 - 14616517
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcat 281  Q
    |||||||||||||||| ||||||||||||||||||    
T  14616551 accacatgcatctagaggagtctagaacattgcat 14616517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 15676507 - 15676545
Alignment:
Q  248 ccacatgcatctagatgagtctagaacattgcatacatt 286  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  15676507 ccacatgcatctagaggagtctagaacattgcatgcatt 15676545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 20847440 - 20847339
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 346  Q
    |||||||| ||||||| |||||||||||||||||| |||||  | |||    || || ||||||||||| |||||| || ||||  ||||||||||| ||    
T  20847440 accacatgtatctagaagagtctagaacattgcatgcatttgatcattggtgaaacgtgtcatacttgactatgtgtattggtgattatgtgcattgatg 20847341  T
Q  347 aa 348  Q
    ||    
T  20847340 aa 20847339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 11774822 - 11774762
Alignment:
Q  317 tatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaac 377  Q
    |||||||||| ||||||||||||||||||| | ||||| ||||  | ||||||| ||||||    
T  11774822 tatgtgaatcagtgtatatgtgcattggtggacttttgttgatgattgtgaatatttgaac 11774762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 17957577 - 17957534
Alignment:
Q  328 gtgtatatgtgcattggtgaatttttggtgattgtcgtgaatact 372  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||    
T  17957577 gtgtgtatgtgcattggtgaa-ttttggtgattgttgtgaatact 17957534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 17958522 - 17958490
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgc 279  Q
    |||||||||||||||| ||||||||||||||||    
T  17958522 accacatgcatctagacgagtctagaacattgc 17958490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 19699238 - 19699274
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19699238 catgcatctagaagagtctagaacattgcatgcattt 19699274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 19709823 - 19709859
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19709823 catgcatctagaagagtctagaacattgcatgcattt 19709859  T

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Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 21958629 - 21958569
Alignment:
Q  317 tatgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaac 377  Q
    ||||||||| |||||| ||||||||||||| | ||||| |||| || ||||||| ||||||    
T  21958629 tatgtgaattggtgtaaatgtgcattggtggacttttgttgatggttgtgaatatttgaac 21958569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 40902370 - 40902406
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  40902370 catgcatctagaagagtctagaacattgcatgcattt 40902406  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 41918420 - 41918456
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  41918420 catgcatctagaagagtctagaacattgcatgcattt 41918456  T

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Target: scaffold0205 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 3879 - 4059
Alignment:
Q  18 ttatgaagaaatctaattggaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaagtccatgcatc 115  Q
    |||||||||| | ||||||||||||||||||||| ||| ||  ||||||||||||||||||||||  | ||| |||||||||||||||| ||||||||||    
T  3879 ttatgaagaa-tgtaattggaggtgtacttttacgttgctttggtgattatatagttggtgttaggtgcattttcgagtcttacttgaattccatgcatc 3977  T
Q  116 atagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttac 199  Q
    |  |||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| |  ||||||||||||||||||    
T  3978 a--gtcatattaagtcatatgagaaatgtaaaaggatgtgtacttttacataggtgaaatacgtaagaggaggtgtactcttac 4059  T

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Target: scaffold0205; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 281
Target Start/End: Original strand, 4038 - 4176
Alignment:
Q  143 gtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaactgt-aaattatcttcggactcctat 241  Q
    |||| ||||| |||||| ||||||||||||||||| |  ||||| |||||||||||||||  |||| ||||| || || ||||||||  |  | ||| |     
T  4038 gtaagaggaggtgtactcttacataggtgaaatacgtaagaggatgtgtactcttacgtggatgtggattcatacggtaaaattatccccataatcc-aa 4136  T
Q  242 atggcaccacatgcatctagatgagtctagaacattgcat 281  Q
    |||| |||||||||||||||| |||||||||| |||||||    
T  4137 atggtaccacatgcatctagaagagtctagaatattgcat 4176  T

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Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 249 - 376
Target Start/End: Original strand, 8853552 - 8853679
Alignment:
Q  249 cacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 348  Q
    ||||| ||||||||||||||||||||||||||| |||||| | |||    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8853552 cacatacatctagatgagtctagaacattgcatgcatttaataattggtgagtcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 8853651  T
Q  349 tttttggtgattgtcgtgaatacttgaa 376  Q
     ||||||||||||| |||||||||||||    
T  8853652 cttttggtgattgttgtgaatacttgaa 8853679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 85 - 287
Target Start/End: Complemental strand, 27050443 - 27050239
Alignment:
Q  85 attgtcgagtctt-acttgaa-gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatggg 182  Q
    ||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |  |    
T  27050443 attgtcgagtctttacttgtatgtccatgcatcatagtcatattaagtcatatgagaaatgtaaaaagaggtgtacttttacataggtgaaatacgtaag 27050344  T
Q  183 aggaggtgtactcttacgtgagtgtgtattcaa-actgtaa-attatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgca 280  Q
    |||| ||||||||||||||| ||||| |||||| || |||| ||||| |||||| |||   |||| || |||||||||||||  ||| ||||||||||||    
T  27050343 aggatgtgtactcttacgtgggtgtggattcaatacggtaagattattttcggaatcc--aatggtactacatgcatctagaatagtatagaacattgca 27050246  T
Q  281 tacattt 287  Q
    | |||||    
T  27050245 tgcattt 27050239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 17759919 - 17759987
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17759919 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatagttgaa 17759987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 19061239 - 19061307
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19061239 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatagttgaa 19061307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 420
Target Start/End: Complemental strand, 10725016 - 10724842
Alignment:
Q  252 atgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaattt 351  Q
    |||||||||||||||||||||| |||||||  ||||||  |||    | ||||||| ||||||| || ||||||| ||||||||||||||||||||| ||    
T  10725016 atgcatctagatgagtctagaatattgcatgaatttatctattggtgagtcgagtcgtacttgattacgtgaatctgtgtatatgtgcattggtgaa-tt 10724918  T
Q  352 ttggtgattgtcgtgaatacttgaacaaagtgaattgtatg-------cgattgtggttgtatacttgtggactta 420  Q
    ||||||||||| | ||||||||||| || |||||| |||||       |||||||| |||||||||||||||||||    
T  10724917 ttggtgattgttgcgaatacttgaaaaaggtgaatcgtatgcattactcgattgtgtttgtatacttgtggactta 10724842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 372
Target Start/End: Original strand, 16220351 - 16220481
Alignment:
Q  242 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 341  Q
    |||| ||||||||||||||||| |||||| |||||||||| |||||| | |||    | |||||| ||||||| ||||||||||| ||||||| ||||||    
T  16220351 atggtaccacatgcatctagataagtctaaaacattgcatgcatttaataattggtgagtcgagtaatacttggatatgtgaatcagtgtataagtgcat 16220450  T
Q  342 tggtgaatttttggtgattgtcgtgaatact 372  Q
    ||||||| || |||||||||| |||||||||    
T  16220451 tggtgaacttctggtgattgttgtgaatact 16220481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 392
Target Start/End: Complemental strand, 13438600 - 13438448
Alignment:
Q  241 tatggcaccacatgcatctagatgagtctagaacattgcatacat--ttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtg 338  Q
    ||||| |||||||||||||||| |||||||||||||||||| |||  |||||  ||   || ||||||| ||||||| || |||||| |||||||| |||    
T  13438600 tatggtaccacatgcatctagaagagtctagaacattgcatgcatatttattatttgggtagtcgagtcgtacttgattacgtgaattggtgtatacgtg 13438501  T
Q  339 cattggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatg 392  Q
    ||||||||||  ||||||||  || |||||||||||||||| ||||| ||||||    
T  13438500 cattggtgaa-atttggtgaccgttgtgaatacttgaacaaggtgaactgtatg 13438448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 17320068 - 17320129
Alignment:
Q  107 ccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  17320068 ccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 17320129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 4163673 - 4163736
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  4163673 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 4163736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 18968799 - 18968736
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  18968799 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 18968736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 43429026 - 43429089
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||    
T  43429026 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaagtgtacttttacatag 43429089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 21168206 - 21168268
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  21168206 gtccatgcatcataatcatattgagtcatatgagaaatgtaaaaggaggtgtatttttacata 21168268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 361
Target Start/End: Original strand, 19633441 - 19633550
Alignment:
Q  253 tgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaattt 351  Q
    ||||||||||||||||||||||||||||| ||| | ||| |||    | |||||||| ||||  |||||||||| |||||||||||||||||||||| ||    
T  19633441 tgcatctagatgagtctagaacattgcatgcatatgattcattggtgagtcgagtcaaactttgatatgtgaattggtgtatatgtgcattggtgaaatt 19633540  T
Q  352 ttggtgattg 361  Q
    ||||||||||    
T  19633541 ttggtgattg 19633550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 4147166 - 4147229
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||    
T  4147166 gtccatgcatcatcgtcatatcgagtcatatgagaaatttaaaaggaggtgtacttttacatag 4147229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 14817185 - 14817248
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||    
T  14817185 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggagatatatttttacatag 14817248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 25105454 - 25105517
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  25105454 gtccatgtttcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 25105517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 6230122 - 6230188
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggag---atgtacttttacatag 168  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||   ||||||||||||||||    
T  6230122 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtcatgtacttttacatag 6230188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 34558570 - 34558515
Alignment:
Q  112 catcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    |||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34558570 catcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 34558515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 12020644 - 12020605
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12020644 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 12020605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 17203359 - 17203320
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17203359 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 17203320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 2548038 - 2548105
Alignment:
Q  221 aaattatcttcggactcctatatggcaccacatgcatctagat--gagtctagaacattgcatacattt 287  Q
    |||||||||||||| ||||| |||| ||||||||||||||||   |||| |||||||||||||||||||    
T  2548038 aaattatcttcggaatccta-atggtaccacatgcatctagagaagagtatagaacattgcatacattt 2548105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 11401124 - 11401079
Alignment:
Q  242 atggcaccacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||| |||||||||||||||| |||||||||||||||||| |||||    
T  11401124 atggtaccacatgcatctagaagagtctagaacattgcatgcattt 11401079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 17385391 - 17385351
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  17385391 accacatgcatctagaagagtctagaacattgcatgcattt 17385351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 54040208 - 54040248
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  54040208 accacatgcatctagaagagtctagaacattgcatgcattt 54040248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 54049495 - 54049535
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  54049495 accacatgcatctagaagagtctagaacattgcatgcattt 54049535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 283
Target Start/End: Original strand, 12254393 - 12254453
Alignment:
Q  221 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatac 283  Q
    ||||||||| |||| ||||||  || ||||||||||| |||| ||||||||||||||||||||    
T  12254393 aaattatctccggaatcctat--ggtaccacatgcatttagaagagtctagaacattgcatac 12254453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 6808955 - 6808921
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcat 281  Q
    |||||||||||||||| ||||||||||||||||||    
T  6808955 accacatgcatctagaagagtctagaacattgcat 6808921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 25606936 - 25606974
Alignment:
Q  248 ccacatgcatctagatgagtctagaacattgcatacatt 286  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  25606936 ccacatgcatctagaggagtctagaacattgcatgcatt 25606974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 288
Target Start/End: Original strand, 31413915 - 31413952
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattta 288  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  31413915 catgcatctagaagagtctagaacattgcatgcattta 31413952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 15549212 - 15549172
Alignment:
Q  128 agtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  15549212 agtcatatgtgaaatgtaaaaggaggtgtatttttacatag 15549172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 15551132 - 15551168
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  15551132 catgcatctagaagagtctagaacattgcatgcattt 15551168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 17391880 - 17391840
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||||||| |||||| ||||||||||| |||||    
T  17391880 accacatgcatctagaagagtcttgaacattgcatgcattt 17391840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 25105585 - 25105625
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||| ||||| |||||||||||||||||| |||||    
T  25105585 accacatgcacctagaggagtctagaacattgcatgcattt 25105625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 119 - 376
Target Start/End: Complemental strand, 79493 - 79238
Alignment:
Q  119 gtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaaact 218  Q
    |||||||||||||||||||||||||||||||||| |||||| | |||||||| |||||| | | |||||||  ||||||||||| |||||  |||||||     
T  79493 gtcatattgagtcatatgagaaatgtaaaaggaggtgtactatcacataggtaaaatacgtagaaggaggt-cactcttacgtgggtgtgggttcaaacg 79395  T
Q  219 gt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaat 317  Q
    || ||||| |||||||| ||    |||| |||| |||||||||||||| ||||||||||||||  ||||| || |||    ||| |||||||||||| ||    
T  79394 gtaaaattgtcttcggaatc--gaatggtaccagatgcatctagatgaatctagaacattgcacgcatttgttaattggtgaattgagtcatacttggat 79297  T
Q  318 atgtgaatcggtgtatatgtgcattggtgaatttttggtgattgtcgtgaatacttgaa 376  Q
    | ||||||| |||| | |||||||||| |||| |||||||| | | |||||||||||||    
T  79296 acgtgaatcagtgtttctgtgcattggcgaatgtttggtgactattgtgaatacttgaa 79238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 1560448 - 1560297
Alignment:
Q  242 atggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcat 341  Q
    |||| |||||||| || |||| |||||||||||||||||  || || || ||| |  ||||||||||||||||||||||  |||| ||||||||||||||    
T  1560448 atggtaccacatgtatatagaagagtctagaacattgcaagcaattgttaattgatgaatcgagtcatacttgaatatgcaaatcagtgtatatgtgcat 1560349  T
Q  342 tggtgaatttttggtgattgtcgtgaatacttgaacaaagtgaattgtatgc 393  Q
    |||||||| |||||||||||| |||||| |||||  ||||||||||||||||    
T  1560348 tggtgaatgtttggtgattgttgtgaattcttgagaaaagtgaattgtatgc 1560297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 105 - 290
Target Start/End: Original strand, 5485823 - 5486007
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||  ||||||| |||| ||||||  |    
T  5485823 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggatgtgtacttttacataggtcaaatacatgaaaggaggtatacttttacgttgg 5485922  T
Q  205 tgtgtattcaaactgt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 290  Q
    |||| ||||  || || |||||||||| ||| |  |  || | |||||||||| ||||| ||| |||||||||||||| || |||||    
T  5485923 tgtggattcgtacggtaaaattatcttaggaat--tcaattgtaccacatgcacctagaagagactagaacattgcatgcacttatt 5486007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 4173162 - 4173230
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4173162 gtccatgcatcatagtcatattgagtcatatgagaagtgtaaaaggagatgtacttttacataggtgaa 4173230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 4228771 - 4228839
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  4228771 gtccatgcatcatagtcatattgagtcatatgagaagtgtaaaaggaggtgtacttttacataggtgaa 4228839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 29161995 - 29162063
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  29161995 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaagaagatgtacttttacatagttgaa 29162063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 32350783 - 32350720
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32350783 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgcacttttacatag 32350720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 15006140 - 15006203
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  15006140 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 15006203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 11374336 - 11374404
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  11374336 gtccatacatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtccttttacatagttgaa 11374404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 371
Target Start/End: Original strand, 19728996 - 19729127
Alignment:
Q  241 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcat-acttgaatatgtgaatcggtgtatatgtgc 339  Q
    ||||| |||||||||||||||| |||||||||||||||||| || ||||| |||    | ||||||| | |||||||||||||||||||||| ||||||     
T  19728996 tatggtaccacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcgagtctttacttgaatatgtgaatcggtgtgtatgtgt 19729095  T
Q  340 attggtgaatttttggtgattgtcgtgaatac 371  Q
    |||| | || ||||||||||||| ||| ||||    
T  19729096 attgctaaacttttggtgattgttgtggatac 19729127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 29604270 - 29604207
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29604270 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29604207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 17375241 - 17375305
Alignment:
Q  109 atgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| ||||    
T  17375241 atgcatcatattcatattgagtcatatgagaaatgtaaaaggaggtctacttttacatagttgaa 17375305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 18631100 - 18631163
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| ||| |||||||||||    
T  18631100 gtccatgcatcatcgtcatatcgagtcatatgtgaaatgtaaaaggaggtgttcttttacatag 18631163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 281
Target Start/End: Complemental strand, 24217457 - 24217359
Alignment:
Q  184 ggaggtgtactcttacgtgagtgtgtattcaa-actgtaaa-ttatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcat 281  Q
    ||||||||||||||||||||||||| ||| || |||||||| ||||||   || |||||| ||| ||||||||||| |||| ||||||||||||||||||    
T  24217457 ggaggtgtactcttacgtgagtgtggatttaatactgtaaaattatctatagaatcctat-tggtaccacatgcatttagaagagtctagaacattgcat 24217359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 10973292 - 10973245
Alignment:
Q  301 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 348  Q
    ||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  10973292 tcgagtcatacttgattatgtgaattggtgtatacgtgcattggtgaa 10973245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 12975074 - 12975025
Alignment:
Q  241 tatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 290  Q
    ||||| ||||||||||||||||   |||||||||||||||||||||||||    
T  12975074 tatggtaccacatgcatctagaaatgtctagaacattgcatacatttatt 12975025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 21621820 - 21621781
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  21621820 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 21621781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 22363687 - 22363726
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  22363687 gtcatatgaaaaatgtaaaaggagatgttcttttacatag 22363726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 14874942 - 14875023
Alignment:
Q  85 attgtcgagtcttacttgaagtccatgcat-catagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 166  Q
    ||||||||||||  |||||||||||||||| |||| |||| ||||||| |||||  |||||||| |||| | |||||||||||    
T  14874942 attgtcgagtctg-cttgaagtccatgcattcatattcatgttgagtcttatgaagaatgtaaatggaggtttacttttacat 14875023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 171
Target Start/End: Complemental strand, 25918373 - 25918331
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacataggtg 171  Q
    ||||| || ||||||||||||||| ||||||||||||||||||    
T  25918373 gtcatttgtgaaatgtaaaaggaggtgtacttttacataggtg 25918331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 135
Target Start/End: Original strand, 31162373 - 31162403
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatat 135  Q
    |||||||||||||||||||||||||||||||    
T  31162373 gtccatgcatcatagtcatattgagtcatat 31162403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 12466181 - 12466221
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  12466181 accacatacatctagaagagtctagaacattgcatgcattt 12466221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 16374917 - 16374881
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16374917 catgcatctagaagagtctagaacattgcatgcattt 16374881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 136
Target Start/End: Complemental strand, 16375064 - 16375036
Alignment:
Q  108 catgcatcatagtcatattgagtcatatg 136  Q
    |||||||||||||||||||||||||||||    
T  16375064 catgcatcatagtcatattgagtcatatg 16375036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 19627866 - 19627830
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  19627866 catgcatctagaagagtctagaacattgcatgcattt 19627830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 22595128 - 22595164
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  22595128 catgcatctagaagagtctagaacattgcatgcattt 22595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 31162523 - 31162559
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  31162523 catgcatctagaagagtctagaacattgcatgcattt 31162559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 35010948 - 35010984
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  35010948 catgcatctagaagagtctagaacattgcatgcattt 35010984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 21108239 - 21108171
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  21108239 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttgaa 21108171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 26561277 - 26561340
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26561277 gtccatgcatcataatcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 26561340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 6455382 - 6455319
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||    
T  6455382 gtccatgcatcatagtcataacgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 6455319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 29912761 - 29912698
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  29912761 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 29912698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 5622919 - 5622981
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  5622919 gtccatgcatcataatcatattgagtcatatgagaaatgtaaaaggaggtgtatttttacata 5622981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 87 - 281
Target Start/End: Complemental strand, 37278276 - 37278075
Alignment:
Q  87 tgtcgagtcttacttgaagtccatgca-tcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag-----gtgaaatacatg 180  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| |||||  |||||||  |||  |||||||||| || |     ||||||||| |     
T  37278276 tgtcgagtcttacttgaagtccatgcattcatagtcatgttgagtcttatgacgaatgtaactggacgtgtacttttatattgcgttagtgaaatacgta 37278177  T
Q  181 ggaggaggtgtactcttacgtgagtgtgtattcaa-actgt-aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattg 278  Q
     | ||||||||||||||||||| ||||| ||||||  |||| ||||||||| |||| ||| || ||| ||||| || ||||| | |||||||||||||||    
T  37278176 agtggaggtgtactcttacgtgggtgtggattcaatgctgtaaaattatctccggaatccaat-tggtaccacgtgtatctaaaagagtctagaacattg 37278078  T
Q  279 cat 281  Q
    |||    
T  37278077 cat 37278075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 221 - 341
Target Start/End: Complemental strand, 25340995 - 25340876
Alignment:
Q  221 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatg 320  Q
    |||||||||  ||| ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| || |||    | |||||||||||||| |||||    
T  25340995 aaattatctctggaatccta-atggtaccacatgcatctagatgagtctagaacattgcatgcatttgttaattggtgagtcgagtcatacttggatatg 25340897  T
Q  321 tgaatcggtgtatatgtgcat 341  Q
    | ||| ||||| |||||||||    
T  25340896 tcaattggtgtgtatgtgcat 25340876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 24082818 - 24082755
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||||||    
T  24082818 gtccatgcatcatcgtcatatcgagtcgtatgagaaatgtaaaaggaggtgtacttttacatag 24082755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 19318119 - 19318220
Alignment:
Q  241 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgca 340  Q
    ||||| |||||||||||||||| |||||||||||||| ||| ||||||||  ||    | ||||||| ||||||| |||||| || |||||||| |||||    
T  19318119 tatggtaccacatgcatctagaagagtctagaacattacatgcatttattatttggtgagtcgagtcgtacttgattatgtgtattggtgtatacgtgca 19318218  T
Q  341 tt 342  Q
    ||    
T  19318219 tt 19318220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 19266867 - 19266820
Alignment:
Q  301 tcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 348  Q
    ||||||||||||||| ||||||||| |||||||| |||| ||||||||    
T  19266867 tcgagtcatacttgattatgtgaattggtgtatacgtgctttggtgaa 19266820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 282
Target Start/End: Original strand, 33627894 - 33627929
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcata 282  Q
    |||||||||||||| |||||||||||||||||||||    
T  33627894 accacatgcatctacatgagtctagaacattgcata 33627929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 18532420 - 18532458
Alignment:
Q  248 ccacatgcatctagatgagtctagaacattgcatacatt 286  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  18532420 ccacatgcatctagaggagtctagaacattgcatgcatt 18532458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 22055384 - 22055422
Alignment:
Q  248 ccacatgcatctagatgagtctagaacattgcatacatt 286  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  22055384 ccacatgcatctagaggagtctagaacattgcatgcatt 22055422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 14343509 - 14343549
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||||||| |||||| ||||||||||| |||||    
T  14343509 accacatgcatctagaagagtctggaacattgcatgcattt 14343549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 16837014 - 16837050
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  16837014 catgcatctagaagagtctagaacattgcatgcattt 16837050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 34937987 - 34937951
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  34937987 catgcatctagaagagtctagaacattgcatgcattt 34937951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 33396028 - 33395960
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  33396028 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacatagttgaa 33395960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 49998806 - 49998868
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||    
T  49998806 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgcacttttacata 49998868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 40437764 - 40437823
Alignment:
Q  109 atgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||| |||| ||||||||||||||||||||  |||||||||||||||    
T  40437764 atgcatcatagtcatatcgagtaatatgagaaatgtaaaaggatgtgtacttttacatag 40437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 46144478 - 46144415
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||| || |||||||  | ||||||||||||||||||||||| |||||||||||||||    
T  46144478 gtccatgcattatcgtcatatcaaatcatatgagaaatgtaaaaggaggtgtacttttacatag 46144415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 17022252 - 17022213
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  17022252 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 17022213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 52399326 - 52399275
Alignment:
Q  108 catgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtact 159  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||| ||||||    
T  52399326 catgcatcatcgtcatatcgagtcgtatgagaaatgtaaaaggaggtgtact 52399275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 21199241 - 21199282
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattta 288  Q
    |||||||||||||||| |||||||||||||||||| ||||||    
T  21199241 accacatgcatctagacgagtctagaacattgcatgcattta 21199282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 20252734 - 20252698
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  20252734 catgcatctagaagagtctagaacattgcatgcattt 20252698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 33395876 - 33395840
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  33395876 catgcatctagaagagtctagaacattgcatgcattt 33395840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 23159 - 23029
Alignment:
Q  9 tggtgttgatt-atgaagaaatctaattggaggtgtacttttacatt--gtttgtgattatatagttggtgttagacggattgtcgagtcttacttg-aa 104  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||   || ||| |||| | ||||||||||| || |||||||||||| ||||| |     
T  23159 tggtgttgatttatgaagaaatgtagttggaggtgtacttttacatttatttggtggttatgttgttggtgttaggcgcattgtcgagtctcacttgtat 23060  T
Q  105 gtccatgcatcatagtcatattgagtcatat 135  Q
    || ||||||||||||||||||||||||||||    
T  23059 gttcatgcatcatagtcatattgagtcatat 23029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 25132890 - 25132827
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  25132890 gtccatgcatcatagtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 25132827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 34135778 - 34135865
Alignment:
Q  128 agtcatatgagaaatgtaaaaggagatgtacttttacataggtgaaatacatgggaggaggtgtactcttacgtgagtgtgtattcaa 215  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||| |  |||||||||||||||||| || ||||| ||||||    
T  34135778 agtcatatgaggaatgtaaaaggaggtgtacttttacataggtgaaatacgtaagaggaggtgtactcttacttgggtgtggattcaa 34135865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 20272069 - 20272008
Alignment:
Q  111 gcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtga 172  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20272069 gcatcacagtcatattgagtcatatgagaaatgtaaaaggaggtgtacttttacataggtga 20272008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 6093534 - 6093474
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttaca 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||    
T  6093534 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaagggtttgtacttttaca 6093474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 19661041 - 19660978
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  19661041 gtccatgcatcatcgtcatatcgagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 19660978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 24881310 - 24881247
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| | ||||| |||||||||||||||||| |||||||||||||||    
T  24881310 gtccatgcatcatcgtcatatcgggtcatttgagaaatgtaaaaggaggtgtacttttacatag 24881247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 18994810 - 18994703
Alignment:
Q  240 atatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaact-aatcgagtcatacttgaatatgtgaatcggtgtatatgtg 338  Q
    |||||| |||||||||||||||| ||||||||| |||||||||||||   |||||   | | || |||||||||||| ||| ||||| |||||||| |||    
T  18994810 atatggtaccacatgcatctagaagagtctagagcattgcatacatt--gtgatttggtgagtcaagtcatacttgattatatgaattggtgtatacgtg 18994713  T
Q  339 cattggtgaa 348  Q
    ||||||||||    
T  18994712 cattggtgaa 18994703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 24533278 - 24533319
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattta 288  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  24533278 accacatgcatctagatgagtctagaacattgcatccattta 24533319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 34135674 - 34135777
Alignment:
Q  9 tggtgttgatt-atgaagaaatctaattggaggtgtacttttacattgttt--gtgattatatagttggtgttagacggattgtcgagtcttacttgaag 105  Q
    ||||||||||| |||||||| | |||||||||||||| ||||| |||| ||  ||| ||||||||||||||||||  | ||||| |||||||| ||||||    
T  34135674 tggtgttgatttatgaagaa-tgtaattggaggtgtagttttatattgctttggtggttatatagttggtgttaggtgcattgttgagtcttatttgaag 34135772  T
Q  106 tccat 110  Q
    |||||    
T  34135773 tccat 34135777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 9782416 - 9782455
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  9782416 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 9782455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 168
Target Start/End: Original strand, 40641786 - 40641825
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  40641786 gtcatatgtgaaatgtaaaaggaggtgtacttttacatag 40641825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 286
Target Start/End: Original strand, 24342999 - 24343037
Alignment:
Q  248 ccacatgcatctagatgagtctagaacattgcatacatt 286  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  24342999 ccacatgcatctagaggagtctagaacattgcatgcatt 24343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 348
Target Start/End: Original strand, 45619705 - 45619803
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt-attgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtgaa 348  Q
    |||||||||||| |||||||||||||||||| ||||| | || || |  ||| | |||||| ||||||| |||| | |||| || ||||||||||||||    
T  45619705 catgcatctagaagagtctagaacattgcatgcatttgaatggttgatgaattgtgtcataattgaatacgtgacttggtgaatttgtgcattggtgaa 45619803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 7513687 - 7513723
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  7513687 catgcatctagaagagtctagaacattgcatgcattt 7513723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 22331202 - 22331166
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  22331202 catgcatctagaagagtctagaacattgcatgcattt 22331166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 42180034 - 42180070
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  42180034 catgcatctagaagagtctagaacattgcatgcattt 42180070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1204 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1204
Description:

Target: scaffold1204; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 1697 - 1759
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  1697 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggaggtgtactcttacata 1759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 15380 - 15448
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  15380 gtccatgcaacatagtcatattgagccatatgagaaatgtaaaagggggtgtacttttacataggtgaa 15448  T

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Target: scaffold0317; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 287
Target Start/End: Original strand, 15512 - 15552
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  15512 accacatgcatctagaagagtctagaacattgcatgcattt 15552  T

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Target: scaffold0003 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 247 - 347
Target Start/End: Original strand, 26038 - 26138
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggtg 346  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  |||    | ||||||| ||||||| ||||||||||||||||||||||||||||||    
T  26038 accacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttgattatgtgaatcggtgtatatgtgcattggtg 26137  T
Q  347 a 347  Q
    |    
T  26138 a 26138  T

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Target: scaffold0357 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 6442 - 6379
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  6442 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 6379  T

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Target: scaffold0253 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0253
Description:

Target: scaffold0253; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 10059 - 9996
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  10059 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 9996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0253; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 19484 - 19421
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  19484 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 19421  T

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Target: scaffold0174 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 21571 - 21638
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtga 172  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  21571 gtccatgcattatagtcatattgagtcatatgagaaatctaaaaggaggtgtaattttacataggtga 21638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 1289 - 1226
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||||| | |||||||||||||    
T  1289 gtccatgcatcatcgtcatatctagtcatatgagaaatgtaaaaggaggtttacttttacatag 1226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 12147 - 12084
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  12147 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacatag 12084  T

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Target: scaffold0006 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 198841 - 198904
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  198841 gtccatgcatcattgtcatatcgagtcatatgagaaatataaaaggagatgtacttttacatag 198904  T

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Target: scaffold0031 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 98643 - 98705
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacata 167  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  98643 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtacttttacata 98705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 10846 - 10913
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||| ||||    
T  10846 gtccatgcatcatagtcatattgagtcatatgag-aatgtaaaaggaggtgtactttaacatagttgaa 10913  T

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Target: scaffold0387 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 2427 - 2490
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||  ||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  2427 gtccatgcatcaccgtcatatcgagtcatatgagaaatttaaaaggagatgtacttttacatag 2490  T

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Target: scaffold0047 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 1558 - 1621
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||    
T  1558 gtccatgcatcattgtcatatcgagtcatatgagaaatgtaaaagcaggtgtacttttacatag 1621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 348
Target Start/End: Original strand, 101086 - 101215
Alignment:
Q  221 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaatcgagtcatac--ttgaata 318  Q
    ||||||||| | || ||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| |||    | |||||||||||  ||| |||    
T  101086 aaattatctcctgaatccta-atggtaccacatgcatctagatgagtctagaacattgcatgcatttattaattggtaagtcgagtcatacttttggata 101184  T
Q  319 tgtgaa-tcggtgtatatgtgcattggtgaa 348  Q
    |||||| | ||||| ||||||||||||||||    
T  101185 tgtgaatttggtgtgtatgtgcattggtgaa 101215  T

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Target: scaffold0017 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 11293 - 11226
Alignment:
Q  106 tccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacataggtgaa 173  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||    
T  11293 tccaagcatcatagtcatatcgagtcatatgagaaatgtaaaaggatgtgtacttttacatagttgaa 11226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 19259 - 19320
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 166  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||    
T  19259 gtccatgcatcatcgtcacatcgagtcatatgagaaatgtaaaaggaggtgtacttttacat 19320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 23524 - 23585
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 166  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||    
T  23524 gtccatgcatcatcgtcatatcgagtcatatgagaaatgtaaaaggaggtgtaattttacat 23585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 28835 - 28896
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacat 166  Q
    ||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||    
T  28835 gtccatgcatcatcgtcacatcgagtcatatgagaaatgtaaaaggaggtgtacttttacat 28896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 25432 - 25491
Alignment:
Q  109 atgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||||||    
T  25432 atgcatcattgtcatatcgagtcatatgagaaatgtaaaaggaggtgtaattttacatag 25491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 6643 - 6706
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||| ||||||||||    
T  6643 gtccatgcatcattgtcatatcgagtcatatgtgaaatgtaaaaggaggtgtatttttacatag 6706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 106095 - 106158
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||||||| |||||||| ||||||    
T  106095 gtccatgcatcatcgtcatatcgagtcatatgtgaaatgtaaaaggaggtgtactttaacatag 106158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 105 - 168
Target Start/End: Original strand, 63949 - 64012
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||    
T  63949 gtccatgcatcatcgtcatatcaagtcatatgtgaaatgtaaaaggaggtgtacttttacatag 64012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 348
Target Start/End: Complemental strand, 1730 - 1624
Alignment:
Q  241 tatggcaccacatgcatctagatgagtctagaacattgcatacatttattgattaactaa-tcgagtcatacttgaatatgtgaatcggtgtatatgtgc 339  Q
    ||||| |||||||||||||||| |||||| ||||||| ||||||||   ||||| | | | | ||||||||| ||| ||||||||| |||||||||||||    
T  1730 tatggtaccacatgcatctagaagagtcttgaacatttcatacattg--tgattcagtgagttgagtcatacatgactatgtgaattggtgtatatgtgc 1633  T
Q  340 attggtgaa 348  Q
    |||||||||    
T  1632 attggtgaa 1624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 68187 - 68148
Alignment:
Q  129 gtcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  68187 gtcatatgagaaatgtaaaaggaggtgtacttttacatag 68148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 256037 - 256082
Alignment:
Q  242 atggcaccacatgcatctagatgagtctagaacattgcatacattt 287  Q
    |||| ||| |||||||||||| |||||||||||||||||| |||||    
T  256037 atggtaccgcatgcatctagaagagtctagaacattgcatgcattt 256082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 5896 - 5847
Alignment:
Q  241 tatggcaccacatgcatctagatgagtctagaacattgcatacatttatt 290  Q
    ||||| |||||||||||||||| | |||||||||||||||| ||||||||    
T  5896 tatggtaccacatgcatctagaagggtctagaacattgcatgcatttatt 5847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 136
Target Start/End: Complemental strand, 12397 - 12366
Alignment:
Q  105 gtccatgcatcatagtcatattgagtcatatg 136  Q
    ||||||||||||||||||||||||||||||||    
T  12397 gtccatgcatcatagtcatattgagtcatatg 12366  T

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Target: scaffold0186 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 348
Target Start/End: Complemental strand, 11573 - 11471
Alignment:
Q  247 accacatgcatctagatgagtctagaacattgcatacatttattgatt-aactaatcgagtcatacttgaatatgtgaatcggtgtatatgtgcattggt 345  Q
    |||||||||||||||| |||||||||| ||||||| |||||  | |||     || || ||||||||||| ||||||| | |||| ||||||||||||||    
T  11573 accacatgcatctagaagagtctagaatattgcatgcatttgataattggtgaaaacgtgtcatacttgactatgtgacttggtgaatatgtgcattggt 11474  T
Q  346 gaa 348  Q
    |||    
T  11473 gaa 11471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 29790 - 29752
Alignment:
Q  130 tcatatgagaaatgtaaaaggagatgtacttttacatag 168  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  29790 tcatatgagaaatgtaaaatgaggtgtacttttacatag 29752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 33897 - 33830
Alignment:
Q  221 aaattatcttcggactcctatatggcaccacatgcatctagat--gagtctagaacattgcatacattt 287  Q
    ||||||||| |||| ||||| |||| ||||||||||||||||   |||||||||||||||||| |||||    
T  33897 aaattatctccggaatccta-atggtaccacatgcatctagagaagagtctagaacattgcatgcattt 33830  T

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Target: scaffold1869 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 860 - 801
Alignment:
Q  221 aaattatcttcggactcctatatggcaccacatgcatctagatgagtctagaacattgcat 281  Q
    |||||||||||||| |||||| ||  |||| ||||||||||| |||| |||||||||||||    
T  860 aaattatcttcggaatcctat-tgctaccatatgcatctagaagagtttagaacattgcat 801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Original strand, 171 - 207
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  171 catgcatctagaagagtctagaacattgcatgcattt 207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 26842 - 26806
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  26842 catgcatctagaagagtctagaacattgcatgcattt 26806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 27857 - 27821
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  27857 catgcatctagaagagtctagaacattgcatgcattt 27821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 39853 - 39817
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
    |||||||||||| |||||||||||||||||| |||||    
T  39853 catgcatctagaagagtctagaacattgcatgcattt 39817  T

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Target: scaffold0115 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 20255 - 20219
Alignment:
Q  251 catgcatctagatgagtctagaacattgcatacattt 287  Q
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T  20255 catgcatctagaagagtctagaacattgcatgcattt 20219  T

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