View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21675_high_23 (Length: 353)
Name: NF21675_high_23
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_23 |
 | |
|
| [»] scaffold2096 (1 HSPs) |
| | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0039 (1 HSPs) |
| | |
|
| [»] scaffold0142 (1 HSPs) |
| | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 5 - 334
Target Start/End: Complemental strand, 17297094 - 17296765
Alignment:
| Q |
5 |
catcatcaaagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||| || |
|
|
| T |
17297094 |
catcatcaaagttggcataccataaggttgttccctagacagattttgcatatttatgtacctattatcaagtctaggtctaacttgaggatgaggaaat |
17296995 |
T |
|
| Q |
105 |
ataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgtcggagcggtta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17296994 |
ataggaacactggtagacacgagtacaccagcggtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgtcggagcggtta |
17296895 |
T |
|
| Q |
205 |
ctcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttg |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17296894 |
ctcccatctccatcaaaaccggcatagccatggttgcccccacgactgttgatacactagcacccactgtaggggcagatgcatgtataaattgtgcttg |
17296795 |
T |
|
| Q |
305 |
tgaagaggactgcaatgattgtgatgatgt |
334 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
17296794 |
tgaagaggactgcgatgattgtgatgatgt |
17296765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 16 - 333
Target Start/End: Complemental strand, 24155056 - 24154728
Alignment:
| Q |
16 |
ttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaacact |
115 |
Q |
| |
|
||||||||||||||||||||| || | | || |||||||| ||||| ||||||| ||||||||||| ||||||||||||| ||||||||||||| ||| |
|
|
| T |
24155056 |
ttggcataccataaggttgtttcc-ataaaggttttgcatggttataaacctatcgtcaagtctagtcctaacttgaggatagggagatataggaatact |
24154958 |
T |
|
| Q |
116 |
ggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcg------gttg------ttgtcggagcggtt |
203 |
Q |
| |
|
| || ||| || | |||| ||| ||| | ||||||||||| |||||||||||| |||||| || | | |||| ||| | ||||||| |
|
|
| T |
24154957 |
agaaggcacaagcataccagtagtgaatggaggcacaaaggtccccatttctggttgtgtcactgcatcaacagttgttgaaacatttgcagaagcggtt |
24154858 |
T |
|
| Q |
204 |
actcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgctt |
303 |
Q |
| |
|
|||||||| || ||| |||| |||||||||||||||| ||||| || ||||| ||| | ||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
24154857 |
actcccatttctatcgaaactggcatagccatggttgtccccatggtagttgaaacattggcacccactgtagtggcaggtgcatgtgtagattgtgctt |
24154758 |
T |
|
| Q |
304 |
gtgaagaggactgcaatgattgtgatgatg |
333 |
Q |
| |
|
||||||| ||||| | ||||||||||||| |
|
|
| T |
24154757 |
gtgaagaagactgtgacgattgtgatgatg |
24154728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 242882 - 242816
Alignment:
| Q |
58 |
ttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacac |
124 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||| | |||||| |||| |||||||| |
|
|
| T |
242882 |
ttatgaacctatcatcaagtctagccctaacttgaggatgaggaaagataggatcactagtagacac |
242816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 242733 - 242662
Alignment:
| Q |
195 |
ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagca |
266 |
Q |
| |
|
||||||||||||||||| ||| || |||| |||||||||||||||||||| ||||||||| | ||||||| |
|
|
| T |
242733 |
ggagcggttactcccatatccgtcgaaactagcatagccatggttgcccccttggctgttgacaaactagca |
242662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 6038418 - 6038495
Alignment:
| Q |
233 |
catggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaaga |
310 |
Q |
| |
|
|||||||||||||| ||| ||||| ||| | ||||| | ||| ||||||||||| |||||| ||||||||| |||||| |
|
|
| T |
6038418 |
catggttgcccccatggcagttgacacattggcacctattgtgggggcagatgcctgtgtagattgtgcttatgaaga |
6038495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 23011190 - 23011138
Alignment:
| Q |
195 |
ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccac |
247 |
Q |
| |
|
||||||||||||| ||| ||| || |||| ||||||||||||||||||||||| |
|
|
| T |
23011190 |
ggagcggttactcgcatgtccctcgaaactggcatagccatggttgcccccac |
23011138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 25 - 333
Target Start/End: Complemental strand, 29892122 - 29891811
Alignment:
| Q |
25 |
cataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacac |
124 |
Q |
| |
|
||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29892122 |
cataaggctattccctagacagactttgcatagttatgtacctatcatcaagtctaggtctaacttgaggatgaggagacgtaggaacactggtagacac |
29892023 |
T |
|
| Q |
125 |
gagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgtcggagcgg----ttactcccatctccatcaa |
220 |
Q |
| |
|
| |||||| | |||||||| | ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||| |||||||||| | | || | |
|
|
| T |
29892022 |
gggtacacaagcagtaaatggaggcacaaaggttcccatttcttgtcatgtcattgtagaggttgttgtcggagcggttgattactcccattttcgtcga |
29891923 |
T |
|
| Q |
221 |
aaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaat |
320 |
Q |
| |
|
|||| |||||| ||||||| |||||||| | ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
29891922 |
aaccagcatagtcatggttacccccacgaccgttgatacactagcacccattgt-ggggcagatgtatgtgtaaattgtgcttgtgaagaggactacaat |
29891824 |
T |
|
| Q |
321 |
gattgtgatgatg |
333 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29891823 |
gattgtgatgatg |
29891811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 315
Target Start/End: Original strand, 17675974 - 17676100
Alignment:
| Q |
189 |
gttgtcggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcat |
288 |
Q |
| |
|
||||| ||||| ||||||| ||| ||| |||||| |||||||||||||||| |||||| | |||||||||||||| |||| |||||||| ||||| | |
|
|
| T |
17675974 |
gttgtaggagcagttactctcatttccgtcaaaatttgcatagccatggttgctcccacgaccgttgatacactagcgcccattgtaggggaagatgtct |
17676073 |
T |
|
| Q |
289 |
gtgtaaattgtgcttgtgaagaggact |
315 |
Q |
| |
|
||||| ||||||||||||||||||||| |
|
|
| T |
17676074 |
gtgtagattgtgcttgtgaagaggact |
17676100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 17675793 - 17675875
Alignment:
| Q |
13 |
aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgagga |
95 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||| ||||| |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
17675793 |
aagttggaataccaaaaggttgttccctagatagattatgcatggttatgaacctatcatcaagtctagccctaacttgagga |
17675875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 17636119 - 17636215
Alignment:
| Q |
189 |
gttgtcggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatg |
285 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||||||| |||||||||||||||| |||||| | |||||||||||||| |||| |||||||| ||||| |
|
|
| T |
17636119 |
gttgtaggagcagttactcccatttccgtcaaaacttgcatagccatggttgctcccacgaccgttgatacactagcgcccattgtaggggaagatg |
17636215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 17635938 - 17636020
Alignment:
| Q |
13 |
aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgagga |
95 |
Q |
| |
|
||||||| |||||| |||||||||||||||| ||||| ||| | |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
17635938 |
aagttggaataccaaaaggttgttccctagatagattatgcgtggttatgaacctatcatcaagtctagccctaacttgagga |
17636020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 332
Target Start/End: Complemental strand, 17162671 - 17162556
Alignment:
| Q |
217 |
tcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactg |
316 |
Q |
| |
|
||||||| ||| | |||||||||||| ||| ||| ||||| ||| | ||| ||||||||||||||||||| ||| | |||||||||||||||| ||||| |
|
|
| T |
17162671 |
tcaaaactggctttgccatggttgcctccatggcagttgacacattggcatccactgtaggggcagatgcctgtatggattgtgcttgtgaagaagactg |
17162572 |
T |
|
| Q |
317 |
caatgattgtgatgat |
332 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
17162571 |
tgatgattatgatgat |
17162556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 23802770 - 23802822
Alignment:
| Q |
195 |
ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccac |
247 |
Q |
| |
|
|||| |||||||||||| ||| || |||| ||||||||||||||||||||||| |
|
|
| T |
23802770 |
ggagtggttactcccatttccgtcgaaactggcatagccatggttgcccccac |
23802822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 23777228 - 23777279
Alignment:
| Q |
129 |
acaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattg |
180 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||||||| | |||||||||||| |
|
|
| T |
23777228 |
acaccagcagtaaatgggggcacaaaggttcccattttttgtcgtgtcattg |
23777279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 22800842 - 22800879
Alignment:
| Q |
3 |
gacatcatcaaagttggcataccataaggttgttccct |
40 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
22800842 |
gacatcatcaaagttggcataccatacggtttttccct |
22800879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 65 - 331
Target Start/End: Complemental strand, 19218947 - 19218681
Alignment:
| Q |
65 |
cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt |
164 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | |||||| |||| ||||| ||||||||| |||||||| |||||||| | |||||||| || || ||| |
|
|
| T |
19218947 |
cctatcatcaaatctagccctaacttgagggttaggagaagtagggacacttgtagacacgggtacaccagcagtaaatggtggcacaaatgtccctatt |
19218848 |
T |
|
| Q |
165 |
tctggtcgtgtcattgtagcggttgttgtcggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactag |
264 |
Q |
| |
|
| |||| ||||||||| ||||||| |||||||||||||||||||| ||| || |||||||||| |||||||| |||||||||| ||||||||||||| |
|
|
| T |
19218847 |
tatggttgtgtcattggagcggttacagtcggagcggttactcccatttccttcgaaaccggcatgaccatggttacccccacggccgttgatacactag |
19218748 |
T |
|
| Q |
265 |
cacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
||| ||||| |||||| ||||| ||||| |||||||||||||||||| |||| |||||||||||| |
|
|
| T |
19218747 |
cactcactgcaggggcggatgcccttgtaatttgtgcttgtgaagaggattgcagtgattgtgatga |
19218681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 77 - 331
Target Start/End: Original strand, 20059948 - 20060201
Alignment:
| Q |
77 |
tctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtc |
176 |
Q |
| |
|
|||||| || |||||||| | |||||| |||| ||||| |||||||||||||||||| |||||||| | ||||| ||||| |||||||||||| ||||| |
|
|
| T |
20059948 |
tctagtactcacttgagggttaggagaagtagggacacttgtagacacgagtacaccaacagtaaatggtggcacgaaggtccccatttctggttgtgtc |
20060047 |
T |
|
| Q |
177 |
attgtagcggttgttgtcggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtag |
276 |
Q |
| |
|
||| || ||| | || |||| |||||||||||| ||| || ||| || | |||||||||||||||||| ||| |||| |||||| ||||||| || || |
|
|
| T |
20060048 |
atttgggcagttatagttggagtggttactcccatgtccgtcgaaatcgac-tagccatggttgcccccaaggccgttggtacacttgcacccaatgcag |
20060146 |
T |
|
| Q |
277 |
gggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
||| |||| ||||| | |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20060147 |
gggtggatgtttgtgtgatttgtgcttgtgaagaggattgcaatgattgtgatga |
20060201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 21381499 - 21381598
Alignment:
| Q |
217 |
tcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactg |
316 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21381499 |
tcaaaactggcatagccatggttgcccccatggtcgttgatacactagcatccactgtaggggcagatgcatgtgtagattgtgcttgtgaagaggactg |
21381598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 65 - 331
Target Start/End: Complemental strand, 20059680 - 20059403
Alignment:
| Q |
65 |
cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt |
164 |
Q |
| |
|
||||||||||| |||||| || |||||| | |||||| |||| ||||| ||||||||| |||||||| |||||||| | ||||| ||||| | |||| |
|
|
| T |
20059680 |
cctatcatcaaatctagtcctcacttgaaagttaggagaagtagggacactcgtagacacgggtacaccagcagtaaatggtggcacgaaggtcctcatt |
20059581 |
T |
|
| Q |
165 |
tctggtcgtgtcattgtagcggtt------------gttgtcggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctg |
252 |
Q |
| |
|
|||| | |||||||| |||||| ||||| ||||||||||||||||| ||| || ||| || | | |||||||||||||||| ||| | |
|
|
| T |
20059580 |
tctgattgtgtcatttgggcggttacagtcggagcggttgtgggagcggttactcccatgtccgtcgaaatcgac-tggccatggttgcccccaaggccg |
20059482 |
T |
|
| Q |
253 |
ttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
||| |||||| |||||||||| ||||| |||| ||||| | || ||||||||||||||| ||||||||||||||||| |
|
|
| T |
20059481 |
ttggtacacttgcacccactgcaggggtggatgtttgtgtgatttatgcttgtgaagaggattgcaatgattgtgatga |
20059403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 21381307 - 21381470
Alignment:
| Q |
13 |
aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaac |
112 |
Q |
| |
|
||||| |||||||||||| ||| |||||||| || || ||||| |||||| |||||||||||| || | |||||| |||| | ||||||| || || |
|
|
| T |
21381307 |
aagttagcataccataagtttgatccctagagaggttctgcatggttatgaacctatcatcaaatccaaccctaactagagggtaaggagatgcagaaaa |
21381406 |
T |
|
| Q |
113 |
actggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtca |
177 |
Q |
| |
|
||| ||||||||| |||||||| ||||||| | ||| |||| ||||||||||||||| |||||| |
|
|
| T |
21381407 |
actagtagacacgggtacaccagtagtaaatggaggc-caaaagttcccatttctggttgtgtca |
21381470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 331
Target Start/End: Complemental strand, 26129459 - 26129323
Alignment:
| Q |
195 |
ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaa |
294 |
Q |
| |
|
||||||||||||||||| | || ||||||||| ||||||||| ||||||||| || |||||||||||||| | || |||||| |||| |||||| |
|
|
| T |
26129459 |
ggagcggttactcccatttttgtcgtaaccggcatggccatggttacccccacggtcgtcgatacactagcacctagtgcaggggcggatgtccgtgtaa |
26129360 |
T |
|
| Q |
295 |
attgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
|| ||||||||||||||| | ||||||||||||| |
|
|
| T |
26129359 |
tttttgcttgtgaagaggataacgatgattgtgatga |
26129323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 5 - 306
Target Start/End: Original strand, 20865445 - 20865758
Alignment:
| Q |
5 |
catcatcaaagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||| |||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
20865445 |
catcatcaaagttggcataccataaggttgttctctagacagacttttcatcgttacgtacctatcatcaagtctaggactaacttgaggatgaggggac |
20865544 |
T |
|
| Q |
105 |
ataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgtcggagcg---- |
200 |
Q |
| |
|
||||||||||||||||||| |||| || | |||||| | ||||||||||||||||||| ||||||| |||||| | ||||||||||||||| |
|
|
| T |
20865545 |
gtaggaacactggtagacacatatacaacagccgtaaatggaggcacaaaggttcccatttttggtcgtttcattgcaatagttgttgtcggagcggttg |
20865644 |
T |
|
| Q |
201 |
--------gttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgt |
292 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||| ||||| | |||||||||||||| ||||| ||||||||||| | ||| |
|
|
| T |
20865645 |
tggaagcagttactcccatatccgtcaaaaccggcatgatcatggttgcgtccacgtccattgatacactagcagccactaatggggcagatgcctatgt |
20865744 |
T |
|
| Q |
293 |
aaattgtgcttgtg |
306 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20865745 |
aaattgtgcttgtg |
20865758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 331
Target Start/End: Complemental strand, 22608604 - 22608476
Alignment:
| Q |
203 |
tactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgct |
302 |
Q |
| |
|
|||||| || ||| || |||| ||||| |||||||||||||||| || |||||||||||||||||||| |||| ||||| ||||||||||||| |
|
|
| T |
22608604 |
tactcctatttccgtcgaaactggcatggccatggttgcccccatggtctttgatacactagcacccactaacagggcggatgcccatgtaaattgtgct |
22608505 |
T |
|
| Q |
303 |
tgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
||||||||||| | ||||||||| |||| |
|
|
| T |
22608504 |
tgtgaagaggattataatgattgtaatga |
22608476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 310
Target Start/End: Original strand, 13963902 - 13964016
Alignment:
| Q |
195 |
ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaa |
294 |
Q |
| |
|
||||||||||||| ||| || |||||||| ||||| | ||||||| |||| | | | ||||| ||| | ||| ||||| ||||||||||||| ||||| | |
|
|
| T |
13963902 |
ggagcggttactcacatttctatcaaaactggcattgacatggttacccc-atgacagttgacacattggcaaccactataggggcagatgcctgtgtga |
13964000 |
T |
|
| Q |
295 |
attgtgcttgtgaaga |
310 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
13964001 |
attgtgcttgtgaaga |
13964016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 10159701 - 10159652
Alignment:
| Q |
6 |
atcatcaaagttggcataccataaggttgttccctagacagattttgcat |
55 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||| ||||| ||||| |
|
|
| T |
10159701 |
atcatcgaagttggcataccatacagttgttccctagaaagattctgcat |
10159652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 13963693 - 13963722
Alignment:
| Q |
13 |
aagttggcataccataaggttgttccctag |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
13963693 |
aagttggcataccataaggttgttccctag |
13963722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 2546133 - 2546399
Alignment:
| Q |
65 |
cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt |
164 |
Q |
| |
|
||||||||||| ||||| ||||||| ||| | |||||| ||| ||||| |||||||| |||||||| |||||||||| ||||||||||| |||||| |
|
|
| T |
2546133 |
cctatcatcaaatctagccctaacttaagggttaggagaagaagggacacttgtagacacatgtacaccagcagtaaatagtggcacaaaggtccccatt |
2546232 |
T |
|
| Q |
165 |
tctggtcgtgtcattgtagcggttgttgtcggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactag |
264 |
Q |
| |
|
||| || |||||||| ||||||| |||||||||||||||||||| ||| || |||| ||||| | |||||||||||||||| || |||||||||| |
|
|
| T |
2546233 |
tctagttgtgtcatttgagcggttacagtcggagcggttactcccatttccgtcgaaactggcatgacaatggttgcccccacggtcgtcgatacactag |
2546332 |
T |
|
| Q |
265 |
cacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
|||||||| |||||| ||||| |||| |||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
2546333 |
cacccacttaaggggcggatgcccatgtattttgtgcttttgaagaggattgcgatgattgtgatga |
2546399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 331
Target Start/End: Original strand, 18083654 - 18083838
Alignment:
| Q |
139 |
taaatagcggcacaaaggttcccatttctggtcgtgtcattgtagcggttgttgtcggagcggttactcccatctccatcaaaaccggcatagccatggt |
238 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||| || ||| || |||||||||| || |
|
|
| T |
18083654 |
taaatagaggcacaaaggttcccatttctggtcgtgtcattgcagcggttgtgga---agcggttactcctatttccgtcgaaaccggcatggcagc--- |
18083747 |
T |
|
| Q |
239 |
tgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
18083748 |
--cccccacggccgttgatacactagtacccattgtaggggcagatgcctgtgtaaattgtggttgtgaagaggattgcaatgattgtgatga |
18083838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 65 - 331
Target Start/End: Complemental strand, 14988173 - 14987895
Alignment:
| Q |
65 |
cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt |
164 |
Q |
| |
|
||||||||||| | | || ||||||||||| | | |||| |||| ||||| ||||||||| |||||||| ||||||| | |||||||||||| ||||| |
|
|
| T |
14988173 |
cctatcatcaaatatggtcctaacttgagggttaagagaagtagggacactagtagacacgggtacaccaatagtaaatggtggcacaaaggtttccatt |
14988074 |
T |
|
| Q |
165 |
tctggtcgtgtcattgtagcggttgttgtcggagcggtt------------actcccatctccatcaaaaccggcatagccatggttgcccccacggctg |
252 |
Q |
| |
|
|||||| |||||||| || |||| |||||||||||| | |||||| ||| ||||||||||||| |||||||||||||||||| | | |
|
|
| T |
14988073 |
tctggtggtgtcatttgagtggttacagtcggagcggttgtgggaacagttattcccatttccgtcaaaaccggcatggccatggttgcccccacgaccg |
14987974 |
T |
|
| Q |
253 |
ttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
| |||||||||||||||| || |||||| ||||| ||| ||| |||| ||||||||||||| || ||||||||||||| |
|
|
| T |
14987973 |
tcgatacactagcacccattgcaggggcggatgcctgtataatttgtacttgtgaagaggattgtgatgattgtgatga |
14987895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 65 - 331
Target Start/End: Complemental strand, 15417784 - 15417506
Alignment:
| Q |
65 |
cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt |
164 |
Q |
| |
|
||||||||||| | | || ||||||||||| | | |||| |||| ||||| ||||||||| |||||||| ||||||| | |||||||||||| ||||| |
|
|
| T |
15417784 |
cctatcatcaaatatggtcctaacttgagggttaagagaagtagggacactagtagacacgggtacaccaatagtaaatggtggcacaaaggtttccatt |
15417685 |
T |
|
| Q |
165 |
tctggtcgtgtcattgtagcggttgttgtcggagcggtt------------actcccatctccatcaaaaccggcatagccatggttgcccccacggctg |
252 |
Q |
| |
|
|||||| |||||||| || |||| |||||||||||| | |||||| ||| ||||||||||||| |||||||||||||||||| | | |
|
|
| T |
15417684 |
tctggtggtgtcatttgagtggttacagtcggagcggttgtgggaacagttattcccatttccgtcaaaaccggcatggccatggttgcccccacgaccg |
15417585 |
T |
|
| Q |
253 |
ttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
| |||||||||||||||| || |||||| ||||| ||| ||| |||| ||||||||||||| || ||||||||||||| |
|
|
| T |
15417584 |
tcgatacactagcacccattgcaggggcggatgcctgtataatttgtacttgtgaagaggattgtgatgattgtgatga |
15417506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 329
Target Start/End: Complemental strand, 7948664 - 7948555
Alignment:
| Q |
220 |
aaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaa |
319 |
Q |
| |
|
|||| ||||| |||||| ||||||||| ||| || ||| || | ||| ||||||||||||||||| ||||| |||||||||||||||| ||||| | |
|
|
| T |
7948664 |
aaactggcattgccatgattgcccccatggcagtcgatgcattgacacatactgtaggggcagatgcctgtgtggattgtgcttgtgaagaagactgtga |
7948565 |
T |
|
| Q |
320 |
tgattgtgat |
329 |
Q |
| |
|
|||||||||| |
|
|
| T |
7948564 |
tgattgtgat |
7948555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 18099185 - 18099147
Alignment:
| Q |
5 |
catcatcaaagttggcataccataaggttgttccctaga |
43 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
18099185 |
catcatcgaagttggcataccatacggttgttccctaga |
18099147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2096 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold2096
Description:
Target: scaffold2096; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 65 - 331
Target Start/End: Original strand, 371 - 648
Alignment:
| Q |
65 |
cctatcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatt |
164 |
Q |
| |
|
||||||||||| |||||| ||||||||||| | |||||| || | ||||| ||||| ||| ||||||| |||||||| | ||||||||||| |||||| |
|
|
| T |
371 |
cctatcatcaaatctagtcctaacttgagggttaggagaagtatggacacttgtagaaacggctacaccagcagtaaatggtggcacaaaggtccccatt |
470 |
T |
|
| Q |
165 |
tctggtcgtgtcattgtagcggtt-----------gttgtcggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgt |
253 |
Q |
| |
|
|||||| |||||||| |||| || ||||| ||||||||||||||||| ||| || |||||||||| |||||||||||||||| ||| |
|
|
| T |
471 |
tctggttgtgtcatttgagcgattaaattggagcagttgtgggagcggttactcccatttccgtcgaaaccggcatggccatggttgcccccaaggccac |
570 |
T |
|
| Q |
254 |
tgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
|| |||||| ||| ||||||||||| | ||| |||||| |||||||||||||||||| | |||||||| |||||| |
|
|
| T |
571 |
tggtacacttgcatccactgtagggccgaatgttcgtgtaatttgtgcttgtgaagaggattacaatgattatgatga |
648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 331
Target Start/End: Complemental strand, 29615633 - 29615372
Alignment:
| Q |
69 |
tcatcaagtctagttctaacttgaggatgaggagatataggaacactggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctg |
168 |
Q |
| |
|
||||||| | |||| || |||||||| | |||| | |||| ||||| ||||||||| |||||||| |||||| | | |||| | ||| |||||||||| |
|
|
| T |
29615633 |
tcatcaaatatagtcctcacttgagggttaggaaaagtagggacacttgtagacacgggtacaccagcagtaagtggttgcacgatggtccccatttctg |
29615534 |
T |
|
| Q |
169 |
gtcgtgtcattgtagcggttgttgtcggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacc |
268 |
Q |
| |
|
|| |||||||| | |||| || ||||||||||||| ||| |||||| ||||||||| |||||||||||||||| || | ||| |||||| ||| | |
|
|
| T |
29615533 |
gttgtgtcatttgggtggttacagttggagcggttactctcatttccatcgaaaccggcagggccatggttgcccccaagg-tcttggtacacttgcatc |
29615435 |
T |
|
| Q |
269 |
cactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
||||| ||||| |||| ||||| | |||||||||||||||||| ||| || |||||||||| |
|
|
| T |
29615434 |
cactgcaggggtggatgtttgtgtgatttgtgcttgtgaagaggattgcgataattgtgatga |
29615372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 22927892 - 22927945
Alignment:
| Q |
195 |
ggagcggttactcccatctccatcaaaaccggcatagccatggttgcccccacg |
248 |
Q |
| |
|
||||||||||||||||| ||| | |||| |||||||||||||||||||||||| |
|
|
| T |
22927892 |
ggagcggttactcccatttccgttgaaactggcatagccatggttgcccccacg |
22927945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 4025663 - 4025634
Alignment:
| Q |
13 |
aagttggcataccataaggttgttccctag |
42 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
4025663 |
aagttggcataccataaggttgttccctag |
4025634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 4025377 - 4025341
Alignment:
| Q |
274 |
taggggcagatgcatgtgtaaattgtgcttgtgaaga |
310 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4025377 |
taggggcagatgcatgtgtggattgtgcttgtgaaga |
4025341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 233 - 322
Target Start/End: Original strand, 14739 - 14828
Alignment:
| Q |
233 |
catggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatga |
322 |
Q |
| |
|
|||||||||||||||| | ||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||| |||| |
|
|
| T |
14739 |
catggttgcccccacgaccgttgatatactagcacccattgtaggggtggatgcccgtgtaaattgtgcttgtgaagaggattgcgatga |
14828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 313
Target Start/End: Complemental strand, 27124285 - 27124227
Alignment:
| Q |
255 |
gatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagagga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |
|
|
| T |
27124285 |
gatacactagcacccactgtaggggcagatgcctgtgtaaattatgcatgtgaagagga |
27124227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 23354973 - 23355029
Alignment:
| Q |
274 |
taggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatg |
330 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||| |
|
|
| T |
23354973 |
taggggcagatgcttgtgtagattgtgcttgtgaagaagactgtgatgattgtgatg |
23355029 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 32351461 - 32351559
Alignment:
| Q |
13 |
aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaa |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||||||| | ||| |||||||||| | |||| | |||||||||||||||||| ||||||| |
|
|
| T |
32351461 |
aagttggcatagcataaggttgttccctagtgaagttttgcatggctataaacctatcatctaacctagcccaaacttgaggatgaggagacataggaa |
32351559 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 32368122 - 32368220
Alignment:
| Q |
13 |
aagttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaa |
111 |
Q |
| |
|
||||||||||| |||||||||||||||||| | |||||||| | ||| |||||||||| | |||| | |||||||||||||||||| ||||||| |
|
|
| T |
32368122 |
aagttggcatagcataaggttgttccctagtgaagttttgcatggctataaacctatcatctaacctagcccaaacttgaggatgaggagacataggaa |
32368220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 46998 - 46693
Alignment:
| Q |
16 |
ttggcataccataaggttgttccctagacagattttgcattgttatgtacctatcatcaagtctagttctaacttgaggatgaggagatataggaacact |
115 |
Q |
| |
|
||||||||| | ||||||||| |||||| ||||||||||| |||||| |||| |||||||| ||| |||||||||||| || | |||||| || |
|
|
| T |
46998 |
ttggcatacaaaaaggttgtttcctagatagattttgcatggttatgaacctgtcatcaagaataggcctaacttgagga------gagacaggaacgct |
46905 |
T |
|
| Q |
116 |
ggtagacacgagtacaccatcagtaaatagcggcacaaaggttcccatttctggtcgtgtca------------ttgtagcggttgttgtcggagcggtt |
203 |
Q |
| |
|
||||||||| ||| |||| || ||||| | ||||||||||| | |||||||||| |||||| |||| | || ||||| ||||| ||| |
|
|
| T |
46904 |
ggtagacacatgtataccagcaataaatggaggcacaaaggt-ctcatttctggttgtgtcactacaacaacagttgtcggagtggttgtgggagcagtt |
46806 |
T |
|
| Q |
204 |
actcccatctccatcaaaaccggcatagccatggttgcccccacggctgttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgctt |
303 |
Q |
| |
|
|| | ||| ||| || ||| |||||| |||||||| |||||| |||||||||||| |||||||||| ||||||||||||| |||||| | || |||| |
|
|
| T |
46805 |
acccacatttccttcgaaattggcataattatggttgctcccacgactgttgatacaccagcacccactataggggcagatgcctgtgtagaatgggctt |
46706 |
T |
|
| Q |
304 |
gtgaagaggactg |
316 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
46705 |
gcgaagaagactg |
46693 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 20014 - 20092
Alignment:
| Q |
253 |
ttgatacactagcacccactgtaggggcagatgcatgtgtaaattgtgcttgtgaagaggactgcaatgattgtgatga |
331 |
Q |
| |
|
||||||||||||||||| || | || |||||| |||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
20014 |
ttgatacactagcaccccttgaaaggatagatgcctgtgtaaattgtgcttgtgaagaggattgcgatgattgtgatga |
20092 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 37594 - 37645
Alignment:
| Q |
195 |
ggagcggttactcccatctccatcaaaaccggcatagccatggttgccccca |
246 |
Q |
| |
|
||||||||||||||| | ||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
37594 |
ggagcggttactcccgtttccgtcaaaactggcatagcaatggttgccccca |
37645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 37527 - 37569
Alignment:
| Q |
137 |
agtaaatagcggcacaaaggttcccatttctggtcgtgtcatt |
179 |
Q |
| |
|
||||||| | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
37527 |
agtaaatgggggcacaaaggttcccatttatggtcgtgtcatt |
37569 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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