View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21675_high_26 (Length: 348)

Name: NF21675_high_26
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21675_high_26
NF21675_high_26
[»] chr5 (8 HSPs)
chr5 (190-326)||(28474144-28474280)
chr5 (167-322)||(32762254-32762416)
chr5 (162-266)||(32656813-32656917)
chr5 (177-288)||(32857519-32857628)
chr5 (173-267)||(32739357-32739449)
chr5 (185-319)||(32558548-32558688)
chr5 (165-208)||(32660926-32660969)
chr5 (277-326)||(32652486-32652535)
[»] chr1 (4 HSPs)
chr1 (161-326)||(17582757-17582923)
chr1 (162-288)||(17590655-17590782)
chr1 (44-102)||(34344780-34344837)
chr1 (280-326)||(17590784-17590830)
[»] chr7 (3 HSPs)
chr7 (189-288)||(37576392-37576492)
chr7 (177-324)||(7970569-7970720)
chr7 (4-46)||(7971005-7971047)
[»] chr2 (2 HSPs)
chr2 (53-107)||(43224723-43224777)
chr2 (55-107)||(16405485-16405538)
[»] chr8 (1 HSPs)
chr8 (44-110)||(31608334-31608400)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 190 - 326
Target Start/End: Original strand, 28474144 - 28474280
Alignment:
Q  190 ttttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagccttacaatgaatctcttattttattc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28474144 ttttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagccttacaatgaatctcttattttattc 28474243  T
Q  290 taacaaatggttcaaagtataaattgatgattttctt 326  Q
    |||||||||||||||||||||| ||||||||||||||    
T  28474244 taacaaatggttcaaagtataatttgatgattttctt 28474280  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 167 - 322
Target Start/End: Original strand, 32762254 - 32762416
Alignment:
Q  167 caatctgtcattgagtacatagattttgagaagaatatattgagaatgattacctttatgttggttatacttttgattaca-aaacttgctaacaagcct 265  Q
    ||||| ||||||||||||||| |||||||||| |||||||||| |||||||| ||||||| | ||||||||||||||| || |||||||||  ||| |||    
T  32762254 caatccgtcattgagtacataaattttgagaataatatattgaaaatgattagctttatggttgttatacttttgatttcataaacttgctttcaatcct 32762353  T
Q  266 tacaatga-atctc-----ttattttattctaacaaatggttcaaagtataaattgatgattt 322  Q
    ||||| || |||||     ||||||||||||||||||||||||||| | ||| ||||||||||    
T  32762354 tacaaagacatctcttattttattttattctaacaaatggttcaaactctaatttgatgattt 32762416  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 162 - 266
Target Start/End: Complemental strand, 32656917 - 32656813
Alignment:
Q  162 agccacaatctgtcattgagtacatagattttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaa 261  Q
    ||||||| ||||||||||||| ||| |||||||||||||||| |||||||||||||| || |||||||||||||||||| ||| ||   |||||||||||    
T  32656917 agccacagtctgtcattgagttcattgattttgagaagaataaattgagaatgattaactatatgttggttatacttttaattgcatggcttgctaacaa 32656818  T
Q  262 gcctt 266  Q
    |||||    
T  32656817 gcctt 32656813  T

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Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 32857519 - 32857628
Alignment:
Q  177 ttgagtacatagattttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagcctta-caatgaat 275  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||| || || ||||   ||| |||||||| |||  |||    
T  32857519 ttgagtacatagattttgagaagaataaattgagaataattagctttatgttggttatacttttgcttgcataact---taagaagccttaccaagaaat 32857615  T
Q  276 ctcttattttatt 288  Q
    |||||||||||||    
T  32857616 ctcttattttatt 32857628  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 32739357 - 32739449
Alignment:
Q  173 gtcattgagtacatagattttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagcctta 267  Q
    ||||||||||||||||||||| ||||||||| | | || ||||||| |||  |||||||||||||||||||   | |||||||||||||||||||    
T  32739357 gtcattgagtacatagattttaagaagaataaacttagtatgattagctt--tgttggttatacttttgatcgtataacttgctaacaagcctta 32739449  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 319
Target Start/End: Complemental strand, 32558688 - 32558548
Alignment:
Q  185 atagattttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagccttacaatg-aatctc----- 278  Q
    ||||| ||| ||||||| |  |||||||||||||  ||| |||||||||||||||||||| ||  || |||||||||||||| ||| | ||||||         
T  32558688 atagactttaagaagaaaaatttgagaatgattagttttgtgttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttact 32558589  T
Q  279 ttattttattctaacaaatggttcaaagtataaattgatga 319  Q
    ||||||||||||| | ||||||||||||| ||| |||||||    
T  32558588 ttattttattctacctaatggttcaaagtctaatttgatga 32558548  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 32660969 - 32660926
Alignment:
Q  165 cacaatctgtcattgagtacatagattttgagaagaatatattg 208  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  32660969 cacaatctgtcattgagtacatagattttgagaagaataaattg 32660926  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 32652535 - 32652486
Alignment:
Q  277 tcttattttattctaacaaatggttcaaagtataaattgatgattttctt 326  Q
    |||||||||||| ||  |||||||||||||| ||| ||||||||||||||    
T  32652535 tcttattttattttagtaaatggttcaaagtctaacttgatgattttctt 32652486  T

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Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 161 - 326
Target Start/End: Original strand, 17582757 - 17582923
Alignment:
Q  161 tagccacaatctgtcattgagtacatagattttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaaca 260  Q
    ||||| ||||| |||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || || |||||||||    
T  17582757 tagccgcaatccgtcattgagtacatagcttttgtgaagaataaattgagaatgattagctttatgttggttatacttttgattgcataatttgctaaca 17582856  T
Q  261 agccttac-aatgaatctcttattttattctaacaaatggttcaaagtataaattgatgattttctt 326  Q
    |||||||| ||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  17582857 agccttacaaataaatcttttattttattctaacaaatggttcaaagtctaatttgatgattttctt 17582923  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 17590655 - 17590782
Alignment:
Q  162 agccacaatctgtcattgagtacatagattttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaa 261  Q
    |||| ||||| || ||||||||||||||||||| |||||||| |||||||||||||| || ||||||| ||||||||||| || || |||||||||||||    
T  17590655 agccgcaatccgtaattgagtacatagattttgtgaagaataaattgagaatgattagctgtatgttgattatacttttggttgcataacttgctaacaa 17590754  T
Q  262 gccttacaatg-aatctcttattttatt 288  Q
    |||| |||| | ||||||||||||||||    
T  17590755 gcctcacaaagaaatctcttattttatt 17590782  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 34344837 - 34344780
Alignment:
Q  44 gtgttatgtttacaaaaataactgttcgtgatccttcgtgaaaaagattgtcgctataa 102  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34344837 gtgttatgtt-acaaaaataactgttcgtgatccttcgtgaaaaagattgtcgctataa 34344780  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 326
Target Start/End: Original strand, 17590784 - 17590830
Alignment:
Q  280 tattttattctaacaaatggttcaaagtataaattgatgattttctt 326  Q
    |||||||||||||||||| | ||||||| ||| ||||||||||||||    
T  17590784 tattttattctaacaaatcgatcaaagtctaatttgatgattttctt 17590830  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 189 - 288
Target Start/End: Original strand, 37576392 - 37576492
Alignment:
Q  189 attttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagccttacaatgaa-tctcttattttat 287  Q
    ||||||||||||||| | | ||||||||||  |||||||||||||||||||||||| || |||||||||||||||||||||| ||| |||||||||||||    
T  37576392 attttgagaagaataaactaagaatgattagatttatgttggttatacttttgattgcataacttgctaacaagccttacaaagaattctcttattttat 37576491  T
Q  288 t 288  Q
    |    
T  37576492 t 37576492  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 324
Target Start/End: Complemental strand, 7970720 - 7970569
Alignment:
Q  177 ttgagtacatagattttgagaagaatatattgagaatgattacctttatgttggttatacttttgattacaaaacttgctaacaagccttacaatgaatc 276  Q
    |||||||||| |||||| ||||||||| ||| |||||||| | ||| ||||||||||||||||||||| ||     |||||||||||||||||   ||||    
T  7970720 ttgagtacattgattttaagaagaataaattaagaatgatcagctt-atgttggttatacttttgattgcatggtctgctaacaagccttacataaaatc 7970622  T
Q  277 tc-----ttattttattctaacaaatggttcaaagtataaattgatgattttc 324  Q
    ||     |||||||||| ||  |||||||||||||| ||| ||||||||||||    
T  7970621 tcttactttattttattatagaaaatggttcaaagtctaatttgatgattttc 7970569  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 7971047 - 7971005
Alignment:
Q  4 ggagaagcagagataaatgcataacaaatgaggtctagtagtg 46  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  7971047 ggagaaacagagatagatgcataacaaatgaggtctagtagtg 7971005  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 43224777 - 43224723
Alignment:
Q  53 ttacaaaaataactgttcgtgatccttcgtgaaaaagattgtcgctataactagc 107  Q
    ||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||    
T  43224777 ttacaaaaacaattgttcgtgatccttcttgaaaaagattttcgctataactagc 43224723  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 16405485 - 16405538
Alignment:
Q  55 acaaaaataact-gttcgtgatccttcgtgaaaaagattgtcgctataactagc 107  Q
    |||||||||||| ||||||||| ||| ||||||||| || ||||||||||||||    
T  16405485 acaaaaataacttgttcgtgatgctttgtgaaaaagtttttcgctataactagc 16405538  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 31608400 - 31608334
Alignment:
Q  44 gtgttatgtttacaaaaataactgttcgtgatccttcgtgaaaaagattgtcgctataactagcgtt 110  Q
    ||||||||||   ||||||||||||| |||||| ||||| ||||| ||||||||||||| |||||||    
T  31608400 gtgttatgttacaaaaaataactgtttgtgatcattcgttaaaaaaattgtcgctataagtagcgtt 31608334  T

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