View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21675_high_3 (Length: 404)

Name: NF21675_high_3
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21675_high_3
NF21675_high_3
[»] chr3 (9 HSPs)
chr3 (17-404)||(46404512-46404899)
chr3 (103-378)||(5004687-5004970)
chr3 (102-379)||(16975252-16975515)
chr3 (98-206)||(16475273-16475381)
chr3 (113-272)||(11967971-11968120)
chr3 (114-207)||(17542813-17542904)
chr3 (103-190)||(9104174-9104261)
chr3 (218-270)||(8730913-8730966)
chr3 (218-270)||(9082800-9082853)
[»] chr7 (9 HSPs)
chr7 (104-404)||(15873886-15874186)
chr7 (101-379)||(21491459-21491750)
chr7 (101-303)||(22077631-22077831)
chr7 (103-311)||(48576332-48576538)
chr7 (102-264)||(18367412-18367577)
chr7 (103-239)||(9993291-9993427)
chr7 (102-244)||(48654339-48654479)
chr7 (103-190)||(12196729-12196816)
chr7 (312-379)||(18367293-18367363)
[»] chr6 (10 HSPs)
chr6 (104-404)||(34636188-34636482)
chr6 (98-379)||(25005139-25005429)
chr6 (102-379)||(23260544-23260829)
chr6 (114-379)||(32450228-32450502)
chr6 (277-378)||(10751527-10751636)
chr6 (104-203)||(26182602-26182700)
chr6 (103-178)||(11166587-11166662)
chr6 (134-268)||(24992447-24992578)
chr6 (102-207)||(13777247-13777350)
chr6 (102-155)||(10751623-10751676)
[»] scaffold0413 (1 HSPs)
scaffold0413 (102-404)||(8839-9150)
[»] chr5 (4 HSPs)
chr5 (184-404)||(536895-537115)
chr5 (104-264)||(536731-536891)
chr5 (84-379)||(4557935-4558241)
chr5 (103-190)||(27026621-27026708)
[»] chr1 (9 HSPs)
chr1 (102-379)||(35762015-35762303)
chr1 (105-303)||(9537406-9537602)
chr1 (101-238)||(37667265-37667401)
chr1 (103-270)||(16074710-16074879)
chr1 (260-379)||(37667144-37667271)
chr1 (102-225)||(21264718-21264841)
chr1 (104-207)||(6835953-6836056)
chr1 (102-179)||(338059-338135)
chr1 (103-178)||(24056214-24056289)
[»] chr2 (8 HSPs)
chr2 (102-254)||(32735391-32735543)
chr2 (97-270)||(1193593-1193765)
chr2 (103-207)||(12774954-12775056)
chr2 (113-207)||(28267692-28267784)
chr2 (170-262)||(29270702-29270792)
chr2 (102-179)||(40447432-40447508)
chr2 (84-178)||(23828298-23828392)
chr2 (119-207)||(44788531-44788617)
[»] chr4 (3 HSPs)
chr4 (103-303)||(28969233-28969431)
chr4 (136-379)||(49499045-49499297)
chr4 (102-190)||(40458905-40458992)
[»] scaffold1838 (1 HSPs)
scaffold1838 (148-303)||(221-374)
[»] scaffold0120 (1 HSPs)
scaffold0120 (103-178)||(2645-2720)
[»] chr8 (5 HSPs)
chr8 (102-207)||(22816487-22816590)
chr8 (170-270)||(35839168-35839268)
chr8 (101-178)||(20264999-20265076)
chr8 (101-178)||(21051628-21051705)
chr8 (105-190)||(40841568-40841652)
[»] scaffold0013 (1 HSPs)
scaffold0013 (114-207)||(243170-243263)
[»] scaffold0002 (1 HSPs)
scaffold0002 (113-178)||(356884-356949)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 404
Target Start/End: Complemental strand, 46404899 - 46404512
Alignment:
Q  17 tcatagcggtttcattgggtatggactgagcggagtacagactgatgcatgtgcattgagggttttactaggaggtaaatcgtttgaggtaagagctttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||    
T  46404899 tcatagcggtttcattgggtatggactgagcggagtacagactgatgcatgtgcattgagggtttcactaggaggtaaagcgtttgaggtaagggctttt 46404800  T
Q  117 t-ccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcat 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404799 ttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcat 46404700  T
Q  216 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttctattcata 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| || ||||||||||||||    
T  46404699 atggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggca-tttttctattcata 46404601  T
Q  316 tatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtagatgatg 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46404600 tatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgatg 46404512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 103 - 378
Target Start/End: Complemental strand, 5004970 - 5004687
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 202  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaactaa 5004871  T
Q  203 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat- 301  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  5004870 aatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacatt 5004771  T
Q  302 -------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 378  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5004770 tattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaata 5004687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 102 - 379
Target Start/End: Original strand, 16975252 - 16975515
Alignment:
Q  102 gaggtaagagctttttcccc-atacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 200  Q
    |||||||| |||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16975252 gaggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgtttgttgaaaagaacaaaacaact 16975351  T
Q  201 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||     
T  16975352 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatgacg 16975451  T
Q  301 ttttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 379  Q
    |                |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16975452 t----------------tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 16975515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 98 - 206
Target Start/End: Original strand, 16475273 - 16475381
Alignment:
Q  98 gtttgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 197  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16475273 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 16475372  T
Q  198 actaaaata 206  Q
    |||||||||    
T  16475373 actaaaata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 113 - 272
Target Start/End: Complemental strand, 11968120 - 11967971
Alignment:
Q  113 tttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa--caaaacaactaaaatatgaa 210  Q
    ||||| ||||||||| | |||||||||||||||| |||||||||      |||||||||||||      |||||||||  ||||| | ||||||||||||    
T  11968120 ttttttcccatacgtccatactaagtactaggatgatgttatga------ggtagagattctt------tgaaaagaagacaaaaaatctaaaatatgaa 11968033  T
Q  211 ttcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgt 272  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11968032 tttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgt 11967971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 17542904 - 17542813
Alignment:
Q  114 ttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 207  Q
    |||||||||||||||||||||||||  ||||| | |||||| || ||| |||||  |||||||||| |||||||||  ||||||| ||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga--aaaacaattaaaatat 17542813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 9104174 - 9104261
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 190  Q
    ||||||| | |||||||||||||||| |||||||||  ||||| | |||||| || ||| |||||  |||||||||| ||||||||||    
T  9104174 aggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 9104261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  218 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 270  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  218 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 270  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 104 - 404
Target Start/End: Complemental strand, 15874186 - 15873886
Alignment:
Q  104 ggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 203  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  204 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||    
T  15874086 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggcattt 15873987  T
Q  304 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtagatgat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15873986 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgat 15873887  T
Q  404 g 404  Q
    |    
T  15873886 g 15873886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 101 - 379
Target Start/End: Complemental strand, 21491750 - 21491459
Alignment:
Q  101 tgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa--caaaacaa 198  Q
    ||||||| || |||||| ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||||| ||    
T  21491750 tgaggtacgaacttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaa 21491651  T
Q  199 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatga 298  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||    
T  21491650 ctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttatgtagaatga 21491552  T
Q  299 cattttttctatt--------catatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 379  Q
    ||||| || ||||        ||||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  21491551 catttattttattttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 21491459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 101 - 303
Target Start/End: Original strand, 22077631 - 22077831
Alignment:
Q  101 tgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 200  Q
    ||||||||| ||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||  ||||||||    
T  22077631 tgaggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaagaa--aaacaact 22077728  T
Q  201 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgaca 300  Q
    ||||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||    
T  22077729 aaaatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgaca 22077828  T
Q  301 ttt 303  Q
    |||    
T  22077829 ttt 22077831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 103 - 311
Target Start/End: Original strand, 48576332 - 48576538
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 202  Q
    ||||||| ||||||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||| || ||| |||||   |||| || |||    
T  48576332 aggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag---aaaataattaa 48576428  T
Q  203 aatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat 301  Q
    |||||||||| ||||||||||||||||  | |||| ||||||||||| ||||||||||| ||||||||||| || |||||||||| |||  |||||||||    
T  48576429 aatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatgcagaatgacat 48576528  T
Q  302 tttttctatt 311  Q
    || |||||||    
T  48576529 ttattctatt 48576538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 102 - 264
Target Start/End: Complemental strand, 18367577 - 18367412
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaac-aaaac--aa 198  Q
    |||||||| |||||||||| |||||| | || |||| |||||||  ||||||||||||| |||||||||||||||| ||||||||||||  |||||  ||    
T  18367577 gaggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttgaaaagaaagaaaaccaaa 18367478  T
Q  199 ctaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 264  Q
     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18367477 ttaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 9993291 - 9993427
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 202  Q
    ||||||| |||||||||||| ||||||||||||||| |||||  | |||||| || ||| ||||   |||||||||| |||||||||| ||||||| |||    
T  9993291 aggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtcttttgaaaagaagaaaacaattaa 9993390  T
Q  203 aatatgaattcatatggtaaaatttaaccttttataa 239  Q
    |||||  ||| |||||||||||| |||  ||||||||    
T  9993391 aatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 244
Target Start/End: Complemental strand, 48654479 - 48654339
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 201  Q
    |||||||| | ||||||||||||||| | |||||||||||||||| ||||| ||||||||| ||| | |||||||||| ||| |||||  ||||||||||    
T  48654479 gaggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgtcttttggaaaga--aaaacaacta 48654382  T
Q  202 aaatatgaattcatatggtaaaatttaaccttttataaaagtt 244  Q
    ||||||  ||| |  |||||| |||||||  |||| |||||||    
T  48654381 aaatatatatttaggtggtaatatttaacagtttacaaaagtt 48654339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 12196816 - 12196729
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 190  Q
    ||||||| ||||||||||||||| |||||||||||| | |||| |||||||| || ||| |||||  |||||||||| || |||||||    
T  12196816 aggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaa 12196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 379
Target Start/End: Complemental strand, 18367363 - 18367293
Alignment:
Q  312 catatatgttttt--gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaaaatat 379  Q
    |||||||||||||  |||||||||  ||||||||||| || |||| |||||||||||| ||||||||||||    
T  18367363 catatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 18367293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 104 - 404
Target Start/End: Original strand, 34636188 - 34636482
Alignment:
Q  104 ggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 203  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  204 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  34636288 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggcatgacattt 34636387  T
Q  304 tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtagatgat 403  Q
    |||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34636388 tttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtccatgtggatgat 34636481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 98 - 379
Target Start/End: Original strand, 25005139 - 25005429
Alignment:
Q  98 gtttgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 197  Q
    |||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25005139 gtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 25005238  T
Q  198 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatg 297  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  25005239 actaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatg 25005338  T
Q  298 acat--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 379  Q
    ||||        |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25005339 acatttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 102 - 379
Target Start/End: Complemental strand, 23260829 - 23260544
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 201  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaacta 23260730  T
Q  202 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat 301  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  23260729 aaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtggaatgacat 23260630  T
Q  302 --------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 379  Q
            |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  23260629 ttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatat 23260544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 114 - 379
Target Start/End: Complemental strand, 32450502 - 32450228
Alignment:
Q  114 ttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattc 213  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450502 ttttccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattc 32450403  T
Q  214 atatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacat--------tttt 305  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||        ||||    
T  32450402 atatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtggaatgacatttattttatttt 32450303  T
Q  306 tctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 379  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  32450302 tctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatat 32450228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 10751636 - 10751527
Alignment:
Q  277 atgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 368  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751636 atgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaata 10751537  T
Q  369 aatgaaaata 378  Q
    ||||||||||    
T  10751536 aatgaaaata 10751527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 104 - 203
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  104 ggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 203  Q
    |||||| |||||||||||||| || | ||||||||| |||||| |||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaa-aaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 11166662 - 11166587
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 178  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||  | ||||||| ||| |||||||||| |||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 268
Target Start/End: Original strand, 24992447 - 24992578
Alignment:
Q  134 taagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctt 233  Q
    |||||||||||  |||||||||||||| | ||||| |||||||| | |||||||||  ||||||| ||||||||   || |  ||||||||||||  |||    
T  24992447 taagtactagggatatgttatgaattataagtagaaattcttgt-ttttgaaaaga--aaaacaattaaaatatttctttacgtggtaaaatttattctt 24992543  T
Q  234 ttataaaagttattagtttaattatattttatatg 268  Q
    |||||||| | |||| ||||||||  |||||||||    
T  24992544 ttataaaactgattattttaattaagttttatatg 24992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 13777350 - 13777247
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 201  Q
    ||||||||  |||||||||| ||||| | || ||| ||||||||| ||||| ||||||||| ||| | |||||| ||| ||| ||||||  |||||||||    
T  13777350 gaggtaaggactttttccccgtacgtccataataaatactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaagaa--aaacaacta 13777253  T
Q  202 aaatat 207  Q
    ||||||    
T  13777252 aaatat 13777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 10751676 - 10751623
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatg 155  Q
    |||||||| || |||||||||||| |||||||||||||||| ||| ||||||||    
T  10751676 gaggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 102 - 404
Target Start/End: Original strand, 8839 - 9150
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  8839 gaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaacta 8938  T
Q  202 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac-- 299  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||      
T  8939 aaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacat 9038  T
Q  300 -------attttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagtttggtcc 392  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9039 ttattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttcagattggtcc 9138  T
Q  393 atgtagatgatg 404  Q
    |||| |||||||    
T  9139 atgtggatgatg 9150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 184 - 404
Target Start/End: Original strand, 536895 - 537115
Alignment:
Q  184 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataa 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  536895 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataa 536994  T
Q  284 tgttatgtggaatgacattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttca 383  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536995 tgttatgtggaatggcattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatttca 537094  T
Q  384 gtttggtccatgtagatgatg 404  Q
    ||||||||||||| |||||||    
T  537095 gtttggtccatgtggatgatg 537115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 104 - 264
Target Start/End: Original strand, 536731 - 536891
Alignment:
Q  104 ggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 203  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  204 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536831 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 84 - 379
Target Start/End: Complemental strand, 4558241 - 4557935
Alignment:
Q  84 ctaggaggtaaatcgtttgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttg 183  Q
    |||||||||||| |||  |||||||| |||||||||| ||||||   ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  4558241 ctaggaggtaaaacgtacgaggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgttg 4558143  T
Q  184 aaaaga-acaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgata 282  Q
    | |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || || |||    
T  4558142 agaagagagaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataata 4558043  T
Q  283 atgttatgtggaatgacattttttctatt--------catatatg--tttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaat 371  Q
    |||||| || ||||||| ||| || ||||        ||||||||  ||||||||||||||  ||||||||||| || |||| |||||||||||| ||||    
T  4558042 atgttacgtagaatgacttttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaat 4557943  T
Q  372 gaaaatat 379  Q
    ||||||||    
T  4557942 gaaaatat 4557935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 27026621 - 27026708
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 190  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||| |||||| || ||| ||||   |||||||||| ||||||||||    
T  27026621 aggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaa 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 102 - 379
Target Start/End: Complemental strand, 35762303 - 35762015
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 201  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaacta 35762204  T
Q  202 aaatatgaattcatatggtaaaatttaaccttttat--aaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgac 299  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||    
T  35762203 aaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatgttatgtggaatgac 35762104  T
Q  300 at--------tttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 379  Q
    ||        ||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||||    
T  35762103 atttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatat 35762015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 105 - 303
Target Start/End: Complemental strand, 9537602 - 9537406
Alignment:
Q  105 gtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaa 204  Q
    ||||| |||||| || ||||||| | |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||  |||||| |||||    
T  9537602 gtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaa--aaacaagtaaaa 9537505  T
Q  205 tatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 303  Q
    ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  9537504 tataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtagaatgacattt 9537406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 37667401 - 37667265
Alignment:
Q  101 tgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 200  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667401 tgaggtaag-gctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 37667303  T
Q  201 aaaatatgaattcatatggtaaaatttaaccttttata 238  Q
    |||||||||||||||||| |||||||||||||||||||    
T  37667302 aaaatatgaattcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 103 - 270
Target Start/End: Original strand, 16074710 - 16074879
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatg---ttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaac 199  Q
    ||||||| ||||||| ||||||||||| ||||||||||| |||| |||   ||||||||||||| |||||||| ||||| ||| |||||||  ||||||     
T  16074710 aggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaa--aaacaat 16074807  T
Q  200 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 270  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074808 taaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 37667271 - 37667144
Alignment:
Q  260 ttttatatgatgtctgcatgataatgttatgtggaatgacattt--------tttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 351  Q
    |||||||||||||||| ||||||||||||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  352 tgctgataaactaaataaatgaaaatat 379  Q
    ||||||||||||||||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatat 37667144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 225
Target Start/End: Complemental strand, 21264841 - 21264718
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 201  Q
    |||||||| |||||||||||||||||||||||||||| |||||  | ||| || ||  || |||||  |||||||||| |||||||||| ||||||| ||    
T  21264841 gaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaatta 21264742  T
Q  202 aaatatgaattcatatggtaaaat 225  Q
    ||||||  ||| | ||||||||||    
T  21264741 aaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 6835953 - 6836056
Alignment:
Q  104 ggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 203  Q
    |||||| |||||||||||||||||||||||||||| |||||  | | | || || ||| |||||  |||||||||| |||||||||| ||||||| ||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtcttttgaaaagaagaaaacaattaaa 6836052  T
Q  204 atat 207  Q
    ||||    
T  6836053 atat 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 338059 - 338135
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtct 179  Q
    |||||||| ||||||||||||||||| | |||||||| ||| || |||||||| || |||||||||  ||||||||||    
T  338059 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 24056289 - 24056214
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 178  Q
    ||||||||| |||||| ||||||||||||||||| | ||||||   ||||| ||| ||| |||||| |||||||||    
T  24056289 aggtaagagttttttctccatacgttcttactaaatgctaggaccttgttacgaaatagtggtagaaattcttgtc 24056214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 102 - 254
Target Start/End: Complemental strand, 32735543 - 32735391
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 201  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32735543 gaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 32735444  T
Q  202 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 254  Q
    ||||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735443 aaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 1193593 - 1193765
Alignment:
Q  97 cgtttgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaac 196  Q
    |||| |||||||| |||||||||| ||| ||||||||||||| |||| | | |||||| ||  || |||||  |||||||||| |||||||||| |||||    
T  1193593 cgttcgaggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaagaaaac 1193691  T
Q  197 aactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 270  Q
    || ||||||||  ||| | |||||||| | |||  |||||||| ||| |||| |||||||   |||||||||||    
T  1193692 aattaaaatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagttttatatgat 1193765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 12775056 - 12774954
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 202  Q
    ||||||| ||||||||||||||||| | ||| |||||||||||| ||||| ||||||||| ||| | |||||| ||| ||| |||||  |||||||||||    
T  12775056 aggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga--aaaacaactaa 12774959  T
Q  203 aatat 207  Q
    |||||    
T  12774958 aatat 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 28267784 - 28267692
Alignment:
Q  113 tttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 207  Q
    ||||| ||||||||| | |||||||||||||||| ||||| ||||||||| ||| | |||||| ||| |||||||||  ||||||||||||||||    
T  28267784 ttttttcccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaaga--aaaacaactaaaatat 28267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 262
Target Start/End: Original strand, 29270702 - 29270792
Alignment:
Q  170 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattt 262  Q
    |||||||||| ||||||||||  |||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||||||    
T  29270702 attcttgtcttttgaaaagaa--aaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattatattt 29270792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 40447432 - 40447508
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtct 179  Q
    |||||||| ||||||||||||||||| | |||||||| ||| || |||||||| || |||||||||  ||||||||||    
T  40447432 gaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 40447508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 23828392 - 23828298
Alignment:
Q  84 ctaggaggtaaatcgtttgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 178  Q
    |||||| ||||| ||| | |||||||   ||||| |||| |||||||||||||||  ||||| | ||||||||| ||| |||||| |||||||||    
T  23828392 ctaggaagtaaagcgtctaaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaattcttgtc 23828298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 44788531 - 44788617
Alignment:
Q  119 cccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 207  Q
    ||||||||||||||||||||  ||||| | |||||| || ||| |||||  ||| |||||| |||||||||  ||||||| ||||||||    
T  44788531 cccatacgttcttactaagtgttaggactgtgttattaaatagtggtagtaattattgtcttttgaaaaga--aaaacaattaaaatat 44788617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 103 - 303
Target Start/End: Complemental strand, 28969431 - 28969233
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 202  Q
    ||||||| | ||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||||    
T  28969431 aggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaa--aaacaactaa 28969334  T
Q  203 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacatt 302  Q
    ||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||| |||||| ||||||||||    
T  28969333 aatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgtagaatgacatt 28969234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 136 - 379
Target Start/End: Original strand, 49499045 - 49499297
Alignment:
Q  136 agtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctttt 235  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaacctttt 49499144  T
Q  236 ataaaagttattagtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattttttctatt--------catatatg-tttttgt 326  Q
    |||||| ||||||||||||||||||||||||| |||| || || |  |||||| || ||||||||||| || ||||        |||||||| |||||||    
T  49499145 ataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgtagaatgacatttattttattttgatatgcatatatgttttttgt 49499243  T
Q  327 ggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 379  Q
    |||||| | ||||||||||| || |||| |||||||||||| ||||||||||||    
T  49499244 ggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatat 49499297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 190
Target Start/End: Original strand, 40458905 - 40458992
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 190  Q
    |||||||| ||||||||||||||||| | |||||||| ||| || | |||||| || |||||||||  |||||||||| || |||||||    
T  40458905 gaggtaagggctttttccccatacgtccatactaagtgcta-gactgtgttattaagtagaggtagcaattcttgtcttttaaaaagaa 40458992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 148 - 303
Target Start/End: Original strand, 221 - 374
Alignment:
Q  148 atgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttatt 247  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaa--aaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttatt 318  T
Q  248 agtttaattatattttatatgatgtctgcatgataatgttatgtggaatgacattt 303  Q
    ||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||    
T  319 agtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgccattt 374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 2720 - 2645
Alignment:
Q  103 aggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 178  Q
    ||||||| |||||||||||||||||||||||||||| |||||| | |||||| || ||| |||||| |||||||||    
T  2720 aggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 102 - 207
Target Start/End: Complemental strand, 22816590 - 22816487
Alignment:
Q  102 gaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 201  Q
    |||||||| ||||||||||||||||||||| ||||||  ||||| | |||||| || ||| ||| |  |||||||||| |||||||||  ||||||| ||    
T  22816590 gaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttgaaaaga--aaaacaatta 22816493  T
Q  202 aaatat 207  Q
    ||||||    
T  22816492 aaatat 22816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 35839168 - 35839268
Alignment:
Q  170 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 269  Q
    |||||||||| |||||||||| ||||||| ||||||||  ||| | |||||||||| |||  |||||||| ||| |||| |||||||   ||||||||||    
T  35839168 attcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatga 35839267  T
Q  270 t 270  Q
    |    
T  35839268 t 35839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 20265076 - 20264999
Alignment:
Q  101 tgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 178  Q
    ||||||||| | |||||||| ||||||||||| ||||| |||||||  |||| |||| ||| |||||| |||||||||    
T  20265076 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 20264999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 101 - 178
Target Start/End: Complemental strand, 21051705 - 21051628
Alignment:
Q  101 tgaggtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 178  Q
    ||||||||| | |||||||| ||||||||||| ||||| |||||||  |||| |||| ||| |||||| |||||||||    
T  21051705 tgaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 21051628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 190
Target Start/End: Complemental strand, 40841652 - 40841568
Alignment:
Q  105 gtaagagctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 190  Q
    ||||| |||||||||| |||||||||||||||||  ||||| | |||||| || ||| |||||  |||||||||| ||||||||||    
T  40841652 gtaagggctttttccc-atacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 40841568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 243263 - 243170
Alignment:
Q  114 ttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 207  Q
    |||||||||||| ||||||||||||  ||||  | |||||| || ||| ||||   |||||||||| |||||||||| ||||||| ||||||||    
T  243263 ttttccccatacattcttactaagtgttagggctttgttattaaataggggtatcaattcttgtcttttgaaaagaagaaaacaattaaaatat 243170  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 356949 - 356884
Alignment:
Q  113 tttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 178  Q
    |||||||||||||||||||||||||| ||||||   |||| |||| ||| |||||| |||||||||    
T  356949 tttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggtagaaattcttgtc 356884  T

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