View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21675_high_32 (Length: 342)

Name: NF21675_high_32
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21675_high_32
NF21675_high_32
[»] chr1 (3 HSPs)
chr1 (1-82)||(39216682-39216763)
chr1 (259-336)||(39216934-39217011)
chr1 (110-158)||(39216791-39216839)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39216682 - 39216763
Alignment:
Q  1 aaaacagtgtttaagctcagttacacaataatctattcaaaagatcacaaggatacggaaattgaaacaagcaataaatttg 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216682 aaaacagtgtttaagctcagttacacaataatctattcaaaagatcacaaggatacggaaattgaaacaagcaataaatttg 39216763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 39216934 - 39217011
Alignment:
Q  259 gatgctgaacctcgctgaggtaacgtttgtgagaacgaagattgtcgacataaacttcttcttcggggtctgtggtgc 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39216934 gatgctgaacctcgctgaggtaacgtttgtgagaacgaagattgtcgacataaacttcttcttcggggtctctggtgc 39217011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 39216791 - 39216839
Alignment:
Q  110 tctatcctagattcacaataactgctaagtgggcaaatattgaaacctt 158  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39216791 tctatcctagattcacaataactgctaagtgggtaaatattgaaacctt 39216839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University