View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21675_high_37 (Length: 331)
Name: NF21675_high_37
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 55 - 310
Target Start/End: Complemental strand, 25450888 - 25450633
Alignment:
| Q |
55 |
gtgatattcctataaaataacaagggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatca |
154 |
Q |
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| T |
25450888 |
gtgatatttctaataattaacaaaggctaatatatttctgctatattttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatca |
25450789 |
T |
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| Q |
155 |
aatgcatttacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacag |
254 |
Q |
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| T |
25450788 |
aatgcatttacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacag |
25450689 |
T |
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| Q |
255 |
ttgatcctaaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
310 |
Q |
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| T |
25450688 |
ttgatcctaaacaataatagttatgcatgaattaagggaagtcaacagtgatgatg |
25450633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 72 - 310
Target Start/End: Complemental strand, 25446308 - 25446070
Alignment:
| Q |
72 |
taacaagggctaatatatttctgctgtattttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcatttacataata |
171 |
Q |
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| T |
25446308 |
taacaaaggctaatatatttctgctatattttacacacggttgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatttacataata |
25446209 |
T |
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| Q |
172 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaaacaataa |
271 |
Q |
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| T |
25446208 |
attaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacaattgatcctaaacaataa |
25446109 |
T |
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| Q |
272 |
tagttatgcatgaattaagggaagtcaacaatgatgatg |
310 |
Q |
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| T |
25446108 |
tagttatgcatgaattaagggaagtcaacagtgatgatg |
25446070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 65 - 310
Target Start/End: Original strand, 2606833 - 2607080
Alignment:
| Q |
65 |
tataaaataacaagggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcatt |
162 |
Q |
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| T |
2606833 |
tataaaataacaaaggctaatatatttctgctatatattttacacatggctgtacaaggctttatagatgtccaagctttacaaggtaatcaaatgcatt |
2606932 |
T |
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| Q |
163 |
tacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcct |
262 |
Q |
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| T |
2606933 |
tacataataattaaatgcattgaattggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactaactaatgacaattgatcct |
2607032 |
T |
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| Q |
263 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
310 |
Q |
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| T |
2607033 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
2607080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 31669466 - 31669504
Alignment:
| Q |
26 |
atcatcatatacccacaattcatagtttagtgatattcc |
64 |
Q |
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| T |
31669466 |
atcatcatatacccacaattcatagtttagtgatattcc |
31669504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 65 - 310
Target Start/End: Complemental strand, 31901621 - 31901374
Alignment:
| Q |
65 |
tataaaataacaagggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcatt |
162 |
Q |
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||||||||||||| ||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31901621 |
tataaaataacaaaggctaatatatttatgctatatcttttacacacggctgtacaaggctttatagctgtccaagctttacaaggtaatcaaatgcatt |
31901522 |
T |
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| Q |
163 |
tacataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcct |
262 |
Q |
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| T |
31901521 |
tacataataattaaatgcattgaatgggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaactttactgactaatgacagttgatcat |
31901422 |
T |
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| Q |
263 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
310 |
Q |
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| T |
31901421 |
aaacaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
31901374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 67 - 310
Target Start/End: Complemental strand, 31925485 - 31925241
Alignment:
| Q |
67 |
taaaataacaagggctaatatatttctgctgtat--tttacacacggctgtacaaggctttatagctgtccaagttttacaaggtaatcaaatgcattta |
164 |
Q |
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||||||||||| ||||||||||||| |||| ||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
31925485 |
taaaataacaaaggctaatatatttatgctatatcttttacacacggttgtacaaggctttatagttgtccaagctttacaaggtaatcaaatgcattta |
31925386 |
T |
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| Q |
165 |
cataataattaaatgcattgaattagaattacagtagagcaaaacaattgtacatgaataaggtaagtcaattgtactgactaatgacagttgatcctaa |
264 |
Q |
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| T |
31925385 |
cataataattaaatttattga-ttggaattacagtagagcaaaacaattgtacatgaataaggtaagtcaactgtactgactaatgacagttgatcctaa |
31925287 |
T |
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| Q |
265 |
acaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31925286 |
acaataatagttatgcatgaattaagggaagtcaacaatgatgatg |
31925241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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