View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21675_high_4 (Length: 404)

Name: NF21675_high_4
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21675_high_4
NF21675_high_4
[»] chr3 (12 HSPs)
chr3 (11-211)||(6924249-6924449)
chr3 (211-381)||(10391032-10391200)
chr3 (211-381)||(10416144-10416312)
chr3 (211-381)||(10422814-10422982)
chr3 (211-381)||(19236638-19236809)
chr3 (210-381)||(17130067-17130240)
chr3 (211-381)||(12034983-12035154)
chr3 (210-380)||(14864161-14864331)
chr3 (17-208)||(22532307-22532498)
chr3 (211-377)||(10553270-10553439)
chr3 (12-196)||(29547220-29547404)
chr3 (106-202)||(6892496-6892593)
[»] chr5 (17 HSPs)
chr5 (211-381)||(28897697-28897867)
chr5 (211-381)||(28910897-28911067)
chr5 (211-381)||(28926165-28926335)
chr5 (211-381)||(28934092-28934262)
chr5 (211-381)||(28890993-28891163)
chr5 (211-381)||(28932588-28932758)
chr5 (211-381)||(28947292-28947462)
chr5 (211-377)||(20771285-20771451)
chr5 (211-377)||(20780060-20780226)
chr5 (211-381)||(24931497-24931668)
chr5 (210-381)||(20818502-20818673)
chr5 (211-381)||(20825603-20825773)
chr5 (211-381)||(22459473-22459643)
chr5 (211-381)||(22466097-22466267)
chr5 (269-381)||(19235277-19235388)
chr5 (64-145)||(32019656-32019737)
chr5 (102-155)||(31914572-31914625)
[»] chr1 (6 HSPs)
chr1 (211-381)||(16669907-16670077)
chr1 (211-381)||(21704593-21704765)
chr1 (211-381)||(20852701-20852871)
chr1 (211-381)||(20859327-20859497)
chr1 (211-293)||(16662623-16662705)
chr1 (211-380)||(20707369-20707539)
[»] scaffold0010 (1 HSPs)
scaffold0010 (211-381)||(179708-179880)
[»] chr6 (10 HSPs)
chr6 (211-381)||(25811626-25811798)
chr6 (211-381)||(21366099-21366268)
chr6 (211-381)||(23970081-23970250)
chr6 (209-381)||(25633519-25633693)
chr6 (211-381)||(29096180-29096351)
chr6 (211-381)||(9100641-9100812)
chr6 (211-381)||(20009516-20009686)
chr6 (211-381)||(20011575-20011745)
chr6 (106-202)||(5669064-5669160)
chr6 (106-199)||(18017425-18017518)
[»] chr8 (3 HSPs)
chr8 (211-381)||(8596725-8596898)
chr8 (210-381)||(24322238-24322410)
chr8 (211-380)||(23373771-23373941)
[»] chr4 (4 HSPs)
chr4 (11-196)||(54872431-54872616)
chr4 (211-381)||(2707500-2707670)
chr4 (211-380)||(16148407-16148579)
chr4 (91-148)||(50435163-50435220)
[»] chr7 (7 HSPs)
chr7 (211-381)||(2463688-2463857)
chr7 (211-381)||(3858988-3859157)
chr7 (211-381)||(2965175-2965345)
chr7 (211-380)||(29182686-29182858)
chr7 (211-380)||(20907997-20908163)
chr7 (211-380)||(16089391-16089563)
chr7 (67-145)||(27853232-27853310)
[»] scaffold0770 (1 HSPs)
scaffold0770 (211-381)||(188-358)
[»] scaffold0029 (2 HSPs)
scaffold0029 (211-381)||(98492-98662)
scaffold0029 (211-381)||(92766-92936)
[»] chr2 (2 HSPs)
chr2 (211-381)||(8892-9063)
chr2 (211-381)||(29280311-29280483)
[»] scaffold0343 (1 HSPs)
scaffold0343 (240-381)||(772-913)
[»] scaffold0099 (1 HSPs)
scaffold0099 (255-381)||(11223-11354)
[»] scaffold0258 (1 HSPs)
scaffold0258 (211-380)||(24931-25103)
[»] scaffold0516 (1 HSPs)
scaffold0516 (211-377)||(259-425)
[»] scaffold0605 (1 HSPs)
scaffold0605 (211-381)||(8942-9114)
[»] scaffold0085 (1 HSPs)
scaffold0085 (250-380)||(16998-17129)
[»] scaffold0155 (1 HSPs)
scaffold0155 (211-380)||(48-223)
[»] scaffold0053 (1 HSPs)
scaffold0053 (211-380)||(81067-81242)
[»] scaffold0023 (1 HSPs)
scaffold0023 (245-380)||(131806-131937)
[»] scaffold0873 (1 HSPs)
scaffold0873 (209-306)||(2665-2763)
[»] scaffold0348 (1 HSPs)
scaffold0348 (211-380)||(13281-13448)
[»] scaffold0225 (1 HSPs)
scaffold0225 (106-202)||(4808-4904)


Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 6924449 - 6924249
Alignment:
Q  11 ggacatcatcaacgggtcatgactacccacacaatagccatgaaaaagccttcttgcaaccatagcctccataagcacattaaaacctccggccaccaaa 110  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6924449 ggacaccatcaacgggtcatgactacccacacaatagccatgaaaaagccttcttgcaaccatagcctccataagcacattaaaaccttcggccaccaaa 6924350  T
Q  111 agaaacaagaaaggtgatagaggatccccttgccttagcccccttcctaaagaaaactcatttgttagagagccattaaccaacactgaagcagtagcag 210  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6924349 agaaacaagaaaggtgacagaggatccccttgccttagcccccttcctaaagaaaactcatttgttagagagccattaaccaacaccgaagcagtagcag 6924250  T
Q  211 t 211  Q
    |    
T  6924249 t 6924249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 10391200 - 10391032
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||  |||||||||||||||||||||||||||   |    
T  10391200 tgtaacaccccgtttcccaaaattacttaaatagtaataatacaa-aataatcagagtaatcataacgagcatgctacatttcttcatttaaaaatggtt 10391102  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10391101 aaatagaggatatataaaaatctatttaatcaaacgtcgttcataaaattgtcatt-aactcgcagcggat 10391032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 10416312 - 10416144
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||  |||||||||||||||||||||||||||   |    
T  10416312 tgtaacaccccgtttcccaaaattacttaaatagtaataatacaa-aataatcagagtaatcataacgagcatgctacatttcttcatttaaaaatggtt 10416214  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10416213 aaatagaggatatataaaaatctatttaatcaaacgtcgttcataaaattgtcatt-aactcgcagcggat 10416144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 10422982 - 10422814
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||  |||||||||||||||||||||||||||   |    
T  10422982 tgtaacaccccgttttccaaaattacttaaatagtaataatacaa-aataatcagagtaatcataacgagcatgctacatttcttcatttaaaaatggtt 10422884  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10422883 aaatagaggatatataaaaatctatttaatcaaacgtcgttcataaaattgtcatt-aactcgcagcggat 10422814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 19236809 - 19236638
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaat-agtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| |  | || ||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19236809 tgtaacaccccgtttcccaaaacaaatttaattaataataatacatcaataatcagagtaatcataacaggcatgctacatttcttcatttaaaatttac 19236710  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19236709 taaatagagagtatataaaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 19236638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 17130067 - 17130240
Alignment:
Q  210 gtgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaat-cataacaggcatgctacatttcttcatttaaaaatt 307  Q
    ||||||||||||||||||||| || | ||||| || |||| ||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||  |    
T  17130067 gtgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaataatcagagtaattcacaacaggcatgccacatttcttcatttaaaatct 17130166  T
Q  308 actaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
     |||||||||   |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17130167 tctaaatagagtgtatataaaaatctatttaatcaaacgtcattcataaaattgtcattaaactcgcagcggat 17130240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 12035154 - 12034983
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||| ||| || | ||||| || || | ||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||| || |    
T  12035154 tgtaacaccccgtttctcaaaatcaattaaaataatattaatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatttcc 12035055  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | |||||||||||||||||| || ||||||||||| ||||||||||||||||||||    
T  12035054 taaatagagtgtatataaaaatctatttaatcaaacttcattcataaaattatcattaaactcgcagcggat 12034983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 210 - 380
Target Start/End: Original strand, 14864161 - 14864331
Alignment:
Q  210 gtgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaatta 308  Q
    ||||||||||||||||||||| || | ||||| || |||| ||||| |||| ||||||||||||| ||| ||||||| ||||||||||||||||||  |     
T  14864161 gtgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaatcatcagagtaatcacaacgggcatgccacatttcttcatttaaaatctt 14864260  T
Q  309 ctaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    |||||||||   |||| | ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||    
T  14864261 ctaaatagagtgtatataaaaatctatttaatcaaacgtcattcataaaa-tgtcattaaacttgcagcgga 14864331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 22532498 - 22532307
Alignment:
Q  17 catcaacgggtcatgactacccacacaatagccatgaaaaagccttcttgcaaccatagcctccataagcacattaaaacctccggccaccaaaagaaac 116  Q
    |||||||||||  || ||||||||  |||| |||||||||||||||   || ||||| |||||||||||||||  ||||||| | ||| |||||||||||    
T  22532498 catcaacgggttgtggctacccacgaaataaccatgaaaaagcctttgagctaccattgcctccataagcacacgaaaaccttccgccgccaaaagaaac 22532399  T
Q  117 aagaaaggtgatagaggatccccttgccttagcccccttcctaaagaaaactcatttgttagagagccattaaccaacactgaagcagtagc 208  Q
    ||||||||||| | ||||||||||||| | | |||||| |||| ||  |||||||| ||| ||||||| ||||||||||| ||||| |||||    
T  22532398 aagaaaggtgacaaaggatccccttgcgtcaaccccctacctagagggaactcattagttggagagccgttaaccaacaccgaagccgtagc 22532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 377
Target Start/End: Original strand, 10553270 - 10553439
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||| ||||||| || ||||||| || || | || || |||||||||||||||||||||| ||||||| |||||||||||||||||| ||      
T  10553270 tgtaacaccccgcttcccaaaatcacttaaaataatattaattcatcaataatcagagtaatcataacgggcatgccacatttcttcatttaaaatttgt 10553369  T
Q  310 taaataga--agatataaagaaatctatttaatcaaacgtcgttcataaaattgtcatt-aaactcgcagc 377  Q
    ||||||||  | ||||||| ||| ||||||||||||||||||||| | ||||||||||| |||||||||||    
T  10553370 taaatagagtaaatataaaaaaaactatttaatcaaacgtcgttcgt-aaattgtcattaaaactcgcagc 10553439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 196
Target Start/End: Original strand, 29547220 - 29547404
Alignment:
Q  12 gacatcatcaacgggtcatgactacccacacaatagccatgaaaaagccttcttgcaaccatagcctccataagcacattaaaacctccggccaccaaaa 111  Q
    |||| |||||||||||  || ||||||||  |||| |||||||||||||||   |||||||| |||||||||||||||| ||||||| | | | ||||||    
T  29547220 gacaccatcaacgggttgtggctacccacgaaataaccatgaaaaagcctttgagcaaccattgcctccataagcacatgaaaaccttcagtcgccaaaa 29547319  T
Q  112 gaaacaagaaaggtgatagaggatccccttgccttagcccccttcctaaagaaaactcatttgttagagagccattaaccaacac 196  Q
    |||||||||||||||| | ||| ||||||||||| |  | ||| ||||||| |||||| || ||| |||| || ||||| |||||    
T  29547320 gaaacaagaaaggtgacaaagggtccccttgcctcaaactcctacctaaaggaaactctttagttggagatccgttaactaacac 29547404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 6892593 - 6892496
Alignment:
Q  106 ccaaaagaaacaagaaaggtgatagaggatccccttgccttagccccct-tcctaaagaaaactcatttgttagagagccattaaccaacactgaagc 202  Q
    ||||||||||||| || ||||| |||||||| ||||||||||  |||||  || ||||| || |||| |||  |||| ||| ||||||||||||||||    
T  6892593 ccaaaagaaacaaaaagggtgagagaggatctccttgccttaaacccctaccccaaagagaattcatctgtaggagacccactaaccaacactgaagc 6892496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 28897867 - 28897697
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28897867 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 28897768  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28897767 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 28897697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 28911067 - 28910897
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28911067 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 28910968  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28910967 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 28910897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 28926335 - 28926165
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926335 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 28926236  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926235 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 28926165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 28934262 - 28934092
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28934262 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 28934163  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28934162 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 28934092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 28891163 - 28890993
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28891163 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcggagtaatcataacaggcatgctacatttcttcatttaaaaattact 28891064  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28891063 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 28890993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 28932758 - 28932588
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28932758 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcagagtaatcataacagacatgctacatttcttcatttaaaaattact 28932659  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28932658 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 28932588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 28947462 - 28947292
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28947462 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcagagtaatcataacagacatgctacatttcttcatttaaaaattact 28947363  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28947362 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 28947292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 211 - 377
Target Start/End: Original strand, 20771285 - 20771451
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||  |||||    
T  20771285 tgtaacaccccgtttcccgaaattacttaaatagtaataatacatcaataatcagagtaatcataacaggcatgctaaatttcttcatttaaactttact 20771384  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagc 377  Q
    ||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20771385 aaatagagggtatataaaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagc 20771451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 211 - 377
Target Start/End: Original strand, 20780060 - 20780226
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||  |||||    
T  20780060 tgtaacaccccgtttcccgaaattacttaaatagtaataatacatcaataatcagagtaatcataacaggcatgctaaatttcttcatttaaactttact 20780159  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagc 377  Q
    ||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20780160 aaatagagggtatataaaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagc 20780226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 24931668 - 24931497
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaat-agtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | || ||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24931668 tgtaacaccccgtttcccaaaatcaatttaattaataataatacatcaataatcagagtaatcataacaggcatgctacatttcttcatttaaaatttac 24931569  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24931568 taaatagagagtatataaaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 24931497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 210 - 381
Target Start/End: Original strand, 20818502 - 20818673
Alignment:
Q  210 gtgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctaca-tttcttcatttaaaaatta 308  Q
    ||||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||||| |||| ||  || |||||||    
T  20818502 gtgtaacaccccgattcccaaaattacttaaatagtaataatacaacaaaaatcagagtaatcaaaacgggcatgctacattttcctcgatt-aaaatta 20818600  T
Q  309 ctaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
     |||||||||| |||| | |||||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  20818601 ttaaatagaaggtatataaaaatctatttaatcaaacatcattcataaaattgacattaaactcgcagcggat 20818673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 20825603 - 20825773
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctaca-tttcttcatttaaaaattac 309  Q
    |||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||| ||| ||||||||||| |||| ||  || |||||||     
T  20825603 tgtaacaccccgattcccaaaattacttaaatagtaataatacaacaaaaatcagagtaatcaaaacgggcatgctacattttcctcgatt-aaaattat 20825701  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||| |||| | |||||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  20825702 taaatagaaggtatataaaaatctatttaatcaaacatcattcataaaattgacattaaactcgcagcggat 20825773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 22459473 - 22459643
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  22459473 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 22459572  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  22459573 taaatagagtgtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaaactcgcagcggat 22459643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 22466097 - 22466267
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  22466097 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 22466196  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  22466197 taaatagagtgtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaaactcgcagcggat 22466267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 381
Target Start/End: Original strand, 19235277 - 19235388
Alignment:
Q  269 aatcataacaggcatgctacatttcttcatttaaaaattactaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaa 368  Q
    ||||| ||| ||||||| ||||||||||||||||||  | |||||||||   |||| | ||||||||||||||||||||| ||||| |||||||||||||    
T  19235277 aatcacaacgggcatgccacatttcttcatttaaaatcttctaaatagagtgtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaa 19235375  T
Q  369 actcgcagcggat 381  Q
    |||||||||||||    
T  19235376 actcgcagcggat 19235388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 32019656 - 32019737
Alignment:
Q  64 ttgcaaccatagcctccataagcacattaaaacctccggccaccaaaagaaacaagaaaggtgatagaggatccccttgcct 145  Q
    ||||||||| ||||||||| ||||||| ||| ||| | ||| ||||||||||||| || || || |||||||||||||||||    
T  32019656 ttgcaaccaaagcctccatcagcacatgaaacccttccgccgccaaaagaaacaaaaagggcgaaagaggatccccttgcct 32019737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 31914625 - 31914572
Alignment:
Q  102 gccaccaaaagaaacaagaaaggtgatagaggatccccttgccttagccccctt 155  Q
    ||||||||||| ||||| || |||| |||| ||||||||||| |||||||||||    
T  31914625 gccaccaaaaggaacaaaaatggtgttagacgatccccttgctttagccccctt 31914572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 16670077 - 16669907
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16670077 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 16669978  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16669977 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 16669907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 21704593 - 21704765
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaat-agtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaat-ta 308  Q
    |||||||||||||||||||| || | |||||  | |||| ||||| ||| |||||||||||||| ||| ||||||| |||||||||||||||||||| |     
T  21704593 tgtaacaccccgtttcccaaaatcaattaaaacaataataatacatcaaaaatcagagtaatcacaacgggcatgccacatttcttcatttaaaaatctt 21704692  T
Q  309 ctaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||   |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21704693 ctaaatagagtgtatataaaaatctatttaatcaaacgtcattcataaaattgtcattaaactcgcagcggat 21704765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 20852871 - 20852701
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  20852871 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 20852772  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  20852771 taaatagagtgtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaaactcgcagcggat 20852701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 20859497 - 20859327
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  20859497 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 20859398  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||| |||||||||||||||| |||||||||    
T  20859397 taaatagagtgtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaaacttgcagcggat 20859327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 16662705 - 16662623
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttc 293  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16662705 tgtaacaccccgtttcccaaaattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttc 16662623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 20707539 - 20707369
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    ||||||| |||||||||||| || | ||||| |  |||| ||||| || | ||||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  20707539 tgtaacatcccgtttcccaaaatcaattaaaattataataatacatcagtcatcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 20707440  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  20707439 taaatagagtgtatataaaaatctatttaatcaaacgtcattcataaaattctcattaaacttgcagcgga 20707369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 179880 - 179708
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaa---tt 307  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||    
T  179880 tgtaacaccccgtt-cccaaaatttcttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttattcatttaaaaaaaatt 179782  T
Q  308 actaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  179781 actaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 179708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 25811798 - 25811626
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaa---tt 307  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||    
T  25811798 tgtaacaccccgtt-cccaaaatttcttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttattcatttaaaaaaaatt 25811700  T
Q  308 actaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25811699 actaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 25811626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 21366268 - 21366099
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  21366268 tgtaacaccccgtttcccaaaattacttaaatagtagtaatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattgtt 21366169  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21366168 aaatagaggatatata-aaatctatttaatcaaacgtcgttcataaaattatcattaaactcgcagcggat 21366099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 23970250 - 23970081
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  23970250 tgtaacaccccgtttcccaaaattacttaaatagtagtaatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattgtt 23970151  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23970150 aaatagaggatatata-aaatctatttaatcaaacgtcgttcataaaattatcattaaactcgcagcggat 23970081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 209 - 381
Target Start/End: Original strand, 25633519 - 25633693
Alignment:
Q  209 agtgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcattt--aaaaat 306  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||    
T  25633519 agtgtaacaccccgtttcccaaaattacttaaatagtaataatacaacaataatcagagtaatcataaaaggcatgctacatttcttcatttaaaaaaat 25633618  T
Q  307 tactaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||||  | ||| | || ||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  25633619 tactaaatagagaacatataaaattctatttaatcaatcgtcgttcatgaaattgtcattaaactcgcagcggat 25633693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 29096180 - 29096351
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaat-agtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | || ||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29096180 tgtaacaccccgtttcccaaaatcaatttaattaataataatacatcaataatcagagtaatcataacaggcatgctacatttcttcatttaaaatttac 29096279  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29096280 taaatagagagtatataaaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 29096351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 9100812 - 9100641
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaat-agtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||| ||||| || | || ||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9100812 tgtaacaccccgttccccaaaatcaatttaattaataataatacatcaataatcagagtaatcataacaggcatgctacatttcttcatttaaaatttac 9100713  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9100712 taaatagagagtatataaaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 9100641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 20009686 - 20009516
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || || | || || |||||| ||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  20009686 tgtaacaccccgtttcccaaaatcaattaaaataatagtaatgcatcaataagcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 20009587  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  20009586 taaatagagtgtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaaactcgcagcggat 20009516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 20011745 - 20011575
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || || | || || |||||||||||||||||| ||  ||||||| ||||||||||||||||||  | |    
T  20011745 tgtaacaccccgtttcccaaaatcaattaaaataatagtaatgcatcaataatcagagtaatcacaatgggcatgccacatttcttcatttaaaatcttc 20011646  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | |||||||||||||||||| || ||||| ||||||||||||||||||||||||||    
T  20011645 taaatagagtgtatataaaaatctatttaatcaaacttcattcat-aaattgtcattaaactcgcagcggat 20011575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 5669064 - 5669160
Alignment:
Q  106 ccaaaagaaacaagaaaggtgatagaggatccccttgccttagcccccttcctaaagaaaactcatttgttagagagccattaaccaacactgaagc 202  Q
    ||||||||||||| || ||||| |||||||| ||||||||||  ||||| || ||||| || |||| |||  |||| ||||||||||||||||||||    
T  5669064 ccaaaagaaacaaaaagggtgagagaggatctccttgccttaaacccctacccaaagagaattcatctgtaggagacccattaaccaacactgaagc 5669160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Original strand, 18017425 - 18017518
Alignment:
Q  106 ccaaaagaaacaagaaaggtgatagaggatccccttgccttagcccccttcctaaagaaaactcatttgttagagagccattaaccaacactga 199  Q
    ||||||||||||  || ||||| ||||| |||||||||||||  ||||| || || || ||||||| |||| |||| |||||||| ||||||||    
T  18017425 ccaaaagaaacagaaagggtgagagagggtccccttgccttaatcccctgcccaatgagaactcatctgttggagacccattaactaacactga 18017518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 8596898 - 8596725
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaa----t 306  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  8596898 tgtaacaccccgtttcccaaaattacttaaatagtaataatacgacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaaaaaat 8596799  T
Q  307 tactaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |  |||||||| |||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8596798 tgttaaatagaggatatataaaaatctatttaatcaaacgtcgttcataaaattgtcatt-aactcgcagcggat 8596725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 210 - 381
Target Start/End: Complemental strand, 24322410 - 24322238
Alignment:
Q  210 gtgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaatta 308  Q
    ||||||||||||||||||||| || | ||||| || |||| ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||  |     
T  24322410 gtgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatctt 24322311  T
Q  309 ctaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||   |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24322310 ctaaatagagtgtatataaaaatctatttaatcaaacgtcattcataaaattgtcattaaactcgcagcggat 24322238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 380
Target Start/End: Original strand, 23373771 - 23373941
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || |||  ||||| |||| ||||||||||||| ||| ||||||| ||| |||||| |||||||  | |    
T  23373771 tgtaacaccccgtttcccaaaatcaattaaaataataagaatacatcaatcatcagagtaatcacaacgggcatgccacagttcttcgtttaaaatcttc 23373870  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    ||||||||   |||| | |||||||||||||||||| || |||||||||||||||||||||| ||||||||    
T  23373871 taaatagagtgtatataaaaatctatttaatcaaacatcattcataaaattgtcattaaacttgcagcgga 23373941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 54872431 - 54872616
Alignment:
Q  11 ggacatcatcaacgggtcatgactacccacacaatagccatgaaaaagccttcttgcaaccatagcctccataagcacattaaaacctccggccaccaaa 110  Q
    ||||| || ||| ||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| || |||||| | ||||||||     
T  54872431 ggacaccaacaaagggtcatgactacccacactatagccatgaaaaagccttttagcaaccatagcctccataagcacgttgaaaccttcagccaccaag 54872530  T
Q  111 agaaacaagaaaggtgatagaggatccccttgccttagcccccttcctaaagaaaactcatttgttagagagccattaaccaacac 196  Q
    ||||||||||||||||| || |||||||||||||| | ||||||||||||||| |||||||||||| |||||||||| ||||||||    
T  54872531 agaaacaagaaaggtgacaggggatccccttgcctcaacccccttcctaaagagaactcatttgttggagagccattgaccaacac 54872616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 2707670 - 2707500
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  2707670 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 2707571  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2707570 taaatagagtgtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaaactcgcagcggat 2707500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 16148579 - 16148407
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaat-ta 308  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||| ||||||||||||| ||| ||||||| |||||||||||||||||||| |     
T  16148579 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaatcatcagagtaatcacaacgggcatgccacatttcttcatttaaaaatctt 16148480  T
Q  309 ctaaatagaagatata-aagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    |||||||||   |||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  16148479 ctaaatagagtgtatataaaaaatctatttaatcaaacgtcattcataaaattgtcattaaacttgcagcgga 16148407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 50435220 - 50435163
Alignment:
Q  91 taaaacctccggccaccaaaagaaacaagaaaggtgatagaggatccccttgccttag 148  Q
    |||||||| ||||||||||||| ||||| |||||||  || |||||||||||| ||||    
T  50435220 taaaaccttcggccaccaaaaggaacaaaaaaggtgcaagcggatccccttgctttag 50435163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 2463688 - 2463857
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcattt-aaaaattac 309  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||| |    
T  2463688 tgtaacaccccgtttcccaaaattacttaaatagtaataatacaa-aataatcagagtaatcataacgagcatgctacatttcttcattttaaaaattgc 2463786  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||| |||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  2463787 taaatagaggatataaa-aaatctatttagtcaaacatcgttcataaaattatcattaaactcgcagcggat 2463857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 3859157 - 3858988
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcattt-aaaaattac 309  Q
    |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||| |    
T  3859157 tgtaacaccccgtttcccaaaattacttaaatagtaataatacaa-aataatcagagtaatcataacgagcatgctacatttcttcattttaaaaattgc 3859059  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||| |||||| | |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||    
T  3859058 taaatagaggatatata-aaatctatttaatcaaacgtcgtttataaaattatcattaaactcgcggcggat 3858988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 2965175 - 2965345
Alignment:
Q  211 tgtaacaccccgtttcccaacattactt-aaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    ||||||||||||||||| || |  | || ||||| |||| ||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  2965175 tgtaacaccccgtttcctaaaaccaattaaaataataataatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 2965274  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||| | |||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  2965275 taaatagagggtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaaactcgcagcggat 2965345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 29182858 - 29182686
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaat-ta 308  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||| |||||||||| |||||| ||||||| |||||||||||||||||| | |     
T  29182858 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaatcatcagagtaaccataacgggcatgccacatttcttcatttaaaagtctt 29182759  T
Q  309 ctaaatagaagatata-aagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    |||||||||   |||| || ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  29182758 ctaaatagagtgtatataaaaaatctatttaatcaaacgtcattcataaaattgtcattaaacttgcagcgga 29182686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 20908163 - 20907997
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattact 310  Q
    |||||||||||||||||||| || | |||||   |||| ||||| |||||||||||||| |||  || ||||||| ||||||||||||| |||| || ||    
T  20908163 tgtaacaccccgtttcccaaaatcaattaaaa--taataatacatcaataatcagagtattcactacgggcatgccacatttcttcatt-aaaatttcct 20908067  T
Q  311 aaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    |||||||   |||| | ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  20908066 aaatagagtgtatataaaaatctatttaatcaaacgtcattcacaaaattgtcattaaactcgcagcgga 20907997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 211 - 380
Target Start/End: Original strand, 16089391 - 16089563
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaat-ta 308  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||| ||||||||||||| ||| ||||||| |||||||||||||||||||| |     
T  16089391 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaatcatcagagtaatcacaacgggcatgccacatttcttcatttaaaaatctt 16089490  T
Q  309 ctaaatagaagatata-aagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
     ||||||||   ||||  | ||||||||||||||||||||| ||||||||||| |||||||||| ||||||||    
T  16089491 ttaaatagagtgtatatgaaaaatctatttaatcaaacgtcattcataaaattttcattaaacttgcagcgga 16089563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 27853310 - 27853232
Alignment:
Q  67 caaccatagcctccataagcacattaaaacctccggccaccaaaagaaacaagaaaggtgatagaggatccccttgcct 145  Q
    |||||| ||||||||||||||||| ||| ||| | ||| ||| ||||||||| || || || |||||||||||||||||    
T  27853310 caaccagagcctccataagcacatgaaacccttccgccgccagaagaaacaaaaagggcgaaagaggatccccttgcct 27853232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 358 - 188
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcattt--aaaaatta 308  Q
    |||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||||  |||||||||||||||||||||  |||||||     
T  358 tgtaacaccccgtttcccaaaattacttaaatagtaataacacaa-aataatcagagtaatcataacgagcatgctacatttcttcattttaaaaaattg 260  T
Q  309 ctaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  259 ctaaatagaggatatata-aaatctatttaatcaaacgtcgttcataaaattatcattaaactcgcagcggat 188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 98662 - 98492
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcattt--aaaaatta 308  Q
    |||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||||  |||||||||||||||||||||  |||||||     
T  98662 tgtaacaccccgtttcccaaaattacttaaatagtaataacacaa-aataatcagagtaatcataacgagcatgctacatttcttcattttaaaaaattg 98564  T
Q  309 ctaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  98563 ctaaatagaggatatata-aaatctatttaatcaaacgtcgttcataaaattatcattaaactcgcagcggat 98492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 92936 - 92766
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcattt--aaaaatta 308  Q
    |||||||||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||||  |||||||||||||||||||||  |||||||     
T  92936 tgtaacaccccgtttcccaaaattacttaaatagtaataacacaa-aataatcagagtaatcataacgagcatgctacatttcttcattttaaaaaattg 92838  T
Q  309 ctaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  92837 ctaaatagaggatatata-aaatctatttaatcaaacgtcgttcataaaattatcattgaactcgcagcggat 92766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 8892 - 9063
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || ||||  |||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||  | |    
T  8892 tgtaacaccccgtttcccaaaatcaattaaaataataatattacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaatcttc 8991  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8992 taaatagagtgtatataaaaatctatttaatcaaacgtcattcataaaattgtcattaaactcgcagcggat 9063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 381
Target Start/End: Original strand, 29280311 - 29280483
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcat-ttaaaaatta 308  Q
    |||||||||||||||||||| || | ||||| || ||||  |||  |||||||||||||||||| ||| ||||||| |||||||||||| || ||| ||     
T  29280311 tgtaacaccccgtttcccaaaatcaattaaaataataatactacgtcaataatcagagtaatcacaacgggcatgccacatttcttcatattgaaatttc 29280410  T
Q  309 ctaaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    |||||||||   |||| | ||||||||||| |||||||||||| | |||||| ||||||||||| | ||||||    
T  29280411 ctaaatagagtgtatataaaaatctatttagtcaaacgtcgtttacaaaattatcattaaactcacggcggat 29280483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 240 - 381
Target Start/End: Complemental strand, 913 - 772
Alignment:
Q  240 aatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattactaaatagaagatataaagaaatctatttaa 339  Q
    |||| |||| ||||| |||||||||||||||||| ||| ||||||| |||||||||||||||||| || |||||||||   |||| | ||||||||||||    
T  913 aataataataatacatcaataatcagagtaatcacaacgggcatgccacatttcttcatttaaaattttctaaatagagtgtatataaaaatctatttaa 814  T
Q  340 tcaaacgtcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  813 tcaaacgtcattcataaaattgtcattaaactcgcagcggat 772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 381
Target Start/End: Original strand, 11223 - 11354
Alignment:
Q  255 acaataatcagagtaatcataacagg-catgctacatttcttcatttaaaaattactaaatagaaga-tata-aagaaatctatttaatcaaacgtcgtt 351  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||| |||| || ||||||||||||||||||||||||    
T  11223 acaataatcagagtaatcataacaggtcatgctacatttcttcatttaaaatttactaaataagagagtatataaaaaatctatttaatcaaacgtcgtt 11322  T
Q  352 cat-aaaattgtcattaaact-cgcagcggat 381  Q
    ||| ||||||||||||||||| ||||||||||    
T  11323 cataaaaattgtcattaaactacgcagcggat 11354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 211 - 380
Target Start/End: Original strand, 24931 - 25103
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaat-ta 308  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||| |||||| |||||| ||| ||||||| |||||||||||||||||||| |     
T  24931 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaatcatcagaataatcacaacgggcatgccacatttcttcatttaaaaatctt 25030  T
Q  309 ctaaatagaagatata-aagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    |||||||||   |||| |  ||||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  25031 ctaaatagagtgtatatataaaatctatttaatcaaacgtcattcataaaattgtcattaaacttgcagcgga 25103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 211 - 377
Target Start/End: Complemental strand, 425 - 259
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || | ||||| || ||||  |||| |||||||||||||||||| |||  |||||| ||||||||||||||||||  | |    
T  425 tgtaacaccccgtttcccaaaatcaattaaaataataatattacatcaataatcagagtaatcacaacgtgcatgccacatttcttcatttaaaatcttc 326  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagc 377  Q
    ||||||||   |||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  325 taaatagagtgtatataaaaatctatttaatcaaacgtcattcat-aaattgtcattaaactcgcagc 259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 211 - 381
Target Start/End: Complemental strand, 9114 - 8942
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattac 309  Q
    ||||||||| |||||||||| || | ||||| || |||| || || |||||||||||||||||| ||| ||||||| | ||||||||||||||||  | |    
T  9114 tgtaacaccacgtttcccaaaatcaattaaaataataataattcatcaataatcagagtaatcacaacgggcatgccatatttcttcatttaaaatcttc 9015  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacg-tcgttcataaaattgtcattaaactcgcagcggat 381  Q
    ||||||||   |||| | ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||    
T  9014 taaatagagtgtatataaaaatctatttaatcaaacgtttattcataaaattgtcattaaactcgcagcggat 8942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 250 - 380
Target Start/End: Complemental strand, 17129 - 16998
Alignment:
Q  250 atacaacaataatcagagtaat-cataacaggcatgctacatttcttcatttaaaaattactaaatagaagatata-aagaaatctatttaatcaaacgt 347  Q
    ||||| |||||||||||||||| || ||| ||||||| ||||||||||||| |||| |||||||||||||  |||| || ||||||||||||||||||||    
T  17129 atacatcaataatcagagtaattcacaacgggcatgccacatttcttcatt-aaaatttactaaatagaatgtatataaaaaatctatttaatcaaacgt 17031  T
Q  348 cgttcataaaattgtcattaaactcgcagcgga 380  Q
    | |||| ||||||||||||||||||||||||||    
T  17030 cattcacaaaattgtcattaaactcgcagcgga 16998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 223 - 48
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaat-ta 308  Q
    |||||||||||||||||||| || | ||||| || |||| ||||| |||| ||||||||||||| ||  ||||||| |||||||||||||||||||| |     
T  223 tgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaatcatcagagtaatcacaatgggcatgccacatttcttcatttaaaaatctt 124  T
Q  309 ctaaatagaagatat---aaagaaatctatttaatcaaacgtcgttcataaaattgtca-ttaaactcgcagcgga 380  Q
    |||||||||  ||||   ||| ||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||||    
T  123 ctaaatagagtatatataaaaaaaatctatttagtcaaacgtcattcataaaattgtcatttaaacttgcagcgga 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 380
Target Start/End: Complemental strand, 81242 - 81067
Alignment:
Q  211 tgtaacaccccgtttcccaacattactta----aatagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaat 306  Q
    |||||||||||||||||||| || | |||    |||| |||| ||||| |||| ||||||||||||| ||| ||||||| |||||||||||| ||| |||    
T  81242 tgtaacaccccgtttcccaaaatcaattaaaataataataataatacatcaatcatcagagtaatcacaacgggcatgccacatttcttcatgtaacaat 81143  T
Q  307 -tactaaatagaagatata-aagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
     | |||||||||   |||| || ||||||||||||||||||||| | |||||||||||||||||||| ||||||||    
T  81142 cttctaaatagagtgtatataaaaaatctatttaatcaaacgtcatacataaaattgtcattaaacttgcagcgga 81067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 245 - 380
Target Start/End: Original strand, 131806 - 131937
Alignment:
Q  245 taatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaattactaaatagaagatataaagaaatctatttaatcaaa 344  Q
    |||| ||||| | |||||||||||||||| ||| ||||||| |||| ||||||||  ||||||  ||| ||||| |||||||  ||||||||||||||||    
T  131806 taataatacatcgataatcagagtaatcacaacgggcatgccacatgtcttcatt--aaaattcttaattagaatatataaa--aatctatttaatcaaa 131901  T
Q  345 cgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    |||| |||| |||||||||||| |||||||||||||    
T  131902 cgtcattcacaaaattgtcatttaactcgcagcgga 131937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0873 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0873
Description:

Target: scaffold0873; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 2763 - 2665
Alignment:
Q  209 agtgtaacaccccgtttcccaacattacttaaa-tagtaatgatacaacaataatcagagtaatcataacaggcatgctacatttcttcatttaaaaat 306  Q
    |||||||||||||||||||||| || | ||||| || |||| ||||| |||| ||||||||||||| ||| ||||||| |||||||||||| |||||||    
T  2763 agtgtaacaccccgtttcccaaaatcaattaaaataataataatacatcaatcatcagagtaatcacaacgggcatgccacatttcttcatgtaaaaat 2665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 211 - 380
Target Start/End: Original strand, 13281 - 13448
Alignment:
Q  211 tgtaacaccccgtttcccaacattacttaaatagtaatgatacaacaataatcagagtaatc-ataacaggcatgctacatttcttcatttaaaaattac 309  Q
    |||||||||||||||||||| || |  |||||| || | ||| | ||||||||||||||| | | ||| ||||||| ||||||| ||||| |||  ||      
T  13281 tgtaacaccccgtttcccaaaatgaactaaataatagtaataaatcaataatcagagtaaaccacaacgggcatgccacatttcctcattgaaat-ttct 13379  T
Q  310 taaatagaagatataaagaaatctatttaatcaaacgtcgttcataaaattgtcattaaactcgcagcgga 380  Q
    ||||||||| |||||||  |||||||||||| ||||||| |||| |||||   ||||||||| ||||||||    
T  13380 taaatagaatatataaa--aatctatttaattaaacgtcattcacaaaatcaccattaaacttgcagcgga 13448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 4904 - 4808
Alignment:
Q  106 ccaaaagaaacaagaaaggtgatagaggatccccttgccttagcccccttcctaaagaaaactcatttgttagagagccattaaccaacactgaagc 202  Q
    ||||||||||||| || ||||| |||||||| ||||||||||  ||||| || || || || ||||||||  | || ||||||||||||||||||||    
T  4904 ccaaaagaaacaaaaagggtgaaagaggatcaccttgccttaatcccctccccaacgagaattcatttgtaggggacccattaaccaacactgaagc 4808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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