View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21675_high_44 (Length: 317)
Name: NF21675_high_44
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_44 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 7 - 317
Target Start/End: Original strand, 4197343 - 4197653
Alignment:
| Q |
7 |
tttggtgttgttatccttgagttagtcaccggaaggaagcctatagatcctgaatttggggaaaaagacttggttatgtgggcatgcaacaccttggatc |
106 |
Q |
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| T |
4197343 |
tttggtgttgttatccttgagttagtcactggaaggaagcctatagatcctgaatttggggaaaaagacttggttatgtgggcatgcaacaccttggatc |
4197442 |
T |
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| Q |
107 |
agaaaggtgttgaccatgttcttgactcaaggcttgattctttttacaaagaagaaatttgcaaggtcctgaatattggcctaatgtgcactagtcctct |
206 |
Q |
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| T |
4197443 |
agaaaggtgttgaccatgttcttgactcaaggcttgattctttttacaaagaagaaatttgcaaggtcctgaatattggcctaatgtgcactagtcctct |
4197542 |
T |
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| Q |
207 |
tccaattaaccggcctgcaatgagaagagtggtgaagatgttactagaagtaggcccagagagccaaacaaagtcttcccaaaaagatggaaagttgtcc |
306 |
Q |
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| T |
4197543 |
tccaattaaccggcctgcaatgagaagagtggtgaagatgttactagaagtaggcccagagagccaaacaaagtcttcccaaaaagatggaaagttgtcc |
4197642 |
T |
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| Q |
307 |
ccttattacta |
317 |
Q |
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| T |
4197643 |
ccttattacta |
4197653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 34921959 - 34921649
Alignment:
| Q |
7 |
tttggtgttgttatccttgagttagtcaccggaaggaagcctatagatcctgaatttggggaaaaagacttggttatgtgggcatgcaacaccttggatc |
106 |
Q |
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| T |
34921959 |
tttggtgttgttatacttgaattagttactggaagacgccctgtggatcctgagttcggagagaaagatttggttaaatgggtttgcactacattggatc |
34921860 |
T |
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| Q |
107 |
agaaaggtgttgaccatgttcttgactcaaggcttgattctttttacaaagaagaaatttgcaaggtcctgaatattggcctaatgtgcactagtcctct |
206 |
Q |
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||||||| || || ||||| |||||||||||||||||||| | || ||||||||||||||||||||| | || |||||||| ||||| ||||||||||| |
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| T |
34921859 |
agaaaggcgtagatcatgtacttgactcaaggcttgattcatgtttcaaagaagaaatttgcaaggttttcaacattggcctcatgtgtactagtcctct |
34921760 |
T |
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| Q |
207 |
tccaattaaccggcctgcaatgagaagagtggtgaagatgttactagaagtaggcccagagagccaaacaaagtcttcccaaaaagatggaaagttgtcc |
306 |
Q |
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|||||| ||||||||| ||||||||||||| ||||||||||| | ||| ||||| ||||| ||||| || || || | ||||||||||| || ||| |
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| T |
34921759 |
tccaatcaaccggccttcaatgagaagagtagtgaagatgttgcaagaggtaggaatagagaaccaaatgaaacctgccaagaaagatggaaaattatcc |
34921660 |
T |
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| Q |
307 |
ccttattacta |
317 |
Q |
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| T |
34921659 |
ccttattacta |
34921649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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