View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21675_high_47 (Length: 311)
Name: NF21675_high_47
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_47 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 13 - 311
Target Start/End: Complemental strand, 40276459 - 40276165
Alignment:
| Q |
13 |
attctaatagttctaataatatccaaattgccaataatgtggatggtgattatgaagcgaaaactttgttcgatgattctcctaacaatgcatctgatgc |
112 |
Q |
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| T |
40276459 |
attctaatagttctaataatatccaaattgccaataatgtggatggtgattatgaagcgaaaactttgttcgatgattctcctaacaatgcatctgatgc |
40276360 |
T |
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| Q |
113 |
cggttcaccgaaagccattgcaggcgttgtgtcggctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatctacttgtacgtgc |
212 |
Q |
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| T |
40276359 |
cggttcaccgaaagccattgcaggcgttgtgtcggctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatctacttgtacgtgc |
40276260 |
T |
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| Q |
213 |
cttgaatctgaggtatgtacgtgattcatgcaatgcaacacacgtttagtatatttgtaagatttattcaacagttgatataaatttattgggtacaca |
311 |
Q |
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| T |
40276259 |
cttgaatctgaggtat----gtgattcatgcaatgcaacacacgtttagtatatttgtaagatttattcaacagttgatataaatttattgggtacaca |
40276165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 39625037 - 39624950
Alignment:
| Q |
140 |
tgtgtcggctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatctacttgtacgtgccttgaatctgaggta |
227 |
Q |
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| T |
39625037 |
tgtgtcggctcctaagcagcttccgtttgagttcaaagctcttgagtcttgtattgaatctgcttgtacctgccttgaatatgaggta |
39624950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 140 - 227
Target Start/End: Complemental strand, 39634587 - 39634500
Alignment:
| Q |
140 |
tgtgtcggctcctaagcaattaccttttgagtttaaagctcttgaggcttgtattgaatctacttgtacgtgccttgaatctgaggta |
227 |
Q |
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| T |
39634587 |
tgtgtcggctcctaagcagcttccgtttgagttcaaagctcttgagtcttgtattgaatctgcttgtacctgccttgaatatgaggta |
39634500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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