View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21675_high_51 (Length: 301)
Name: NF21675_high_51
Description: NF21675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21675_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 44193871 - 44194092
Alignment:
| Q |
21 |
acatcatctttgttatacaagctcaagaaactgcaattaaaaaattgaatcaataaataattagtgagtaaaagaattaagtgagagagagaatagaaga |
120 |
Q |
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| T |
44193871 |
acatcatctttgttatacaagctcaagaaactgcaattaaaaaattgaatcaataaataattagtgagtaaaagaattaagtgaga--gagaatagaaga |
44193968 |
T |
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| Q |
121 |
agagtaacacttacttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaagaagcagccatgga |
220 |
Q |
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| T |
44193969 |
agagtaacacttacttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaggaagcagccatgga |
44194068 |
T |
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| Q |
221 |
tctgaaattcgaaatttggaggga |
244 |
Q |
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|||||||||||||||||||||||| |
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| T |
44194069 |
tctgaaattcgaaatttggaggga |
44194092 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 217
Target Start/End: Complemental strand, 52359082 - 52359000
Alignment:
| Q |
135 |
ttggtgcataagaggccaagggatttttgtttacggtcgtaagtgtggtgtcgtgaaggaggatcggaggaagaagcagccat |
217 |
Q |
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| T |
52359082 |
ttggtgcacaagagaccgatggaattttgtttacggtcgtatttgtggcgtcgttaaggaggatcggagaaagaagcaaccat |
52359000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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